#NEXUS [written Thu Sep 02 16:59:03 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=33; TAXLABELS Candida_broadrunensis_KY106372 Tuber_excavatum_DQ191677 Tuber_neoexcavatum_KY013643 Tuber_malacodermum_JQ925702 Tuber_pustulatum_MK211308 Tuber_wenchuanense_MH115327 Tuber_rufum_f._lucidum_MT270606 Tuber_zambonelliae_MW642207 'Tuber buendiae NG_073829' Tuber_melosporum_JN392202 Tuber_furfuraceum_GU979090 Tuber_huidongense_GU979099 Tuber_sinoalbidum_MH115299 Tuber_microspiculatum_MH115316 Tuber_huidongense_GU979097 Tuber_umbilicatum_GU979086 Tuber_alcaracense_MN953777 Tuber_aestivum_KF523368 Tuber_aestivum_var._uncinatum_MG385627 Tuber_canaliculatum_DQ191675 Tuber_macrosporum_FJ809838 Tuber_anniae_JQ925681 Tuber_jinshajiangense_KX575846 Tuber_liyuanum_KT067698 Tuber_borchii_JQ925682 Tuber_brunneum_KT897478 Tuber_pseudoseparans_KT897480 Tuber_californicum_JQ925685 'Tuber floridanum NG_064427' 'Tuber hubeiense NG_059582' Tuber_lusitanicum_MT705332 Tuber_microverrucosum_KT067696 Tuber_pseudomagnatum_KP276193 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1195; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Candida_broadrunensis_KY106372 -----------------------------------aacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gtctt-agtaacggcgagtgaagcgacaaaagctcaaatttgaaatctggcgcct--tcggtgtccgagttgtaatttgaagaaggtaactttggttttggctcttgtctatgttccttggaacaggacgtcacagagggtgagaatcccgt--gcgatgagatgc--ccaattccatgtaaagtgctttcgaagagtcgagttgtttgggaatgcagctctaagtgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtacagtgatggaaagatgaaaagaactttgaaaagagagtgaaaaagtacgtgaaattgttgaaagggaagggcttgagatcagacttggtattttgta---tgtctt-actttcgggtggggcctctgcagtttaccgggccagcatcagtttggatggtaggataatgacat-tggaatgtggctctgcttcggtagagtgttatagcccttgttg--atactgcctgtctagactgaggactgcgtctttgactaggatgctggcataatgatcctaagccacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggtgtaaaacccgtacgcgtaatgaaagtgaacgtaggtgagagccct---ttgggtgcatcatcgaccgatcctgatgtcttcggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgtagcggttctgacgtgcaaatcgatcgtcgaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaa---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_excavatum_DQ191677 ----------------------------------------aagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcccc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ccggcgtccgagttgtaatttggag-aggcatctttggga-ggggcccagcctaagctccttggaacagcacgtcacagagggtgagaatcccgttcttggctggatgt--tccctcccctataaagcgccttcgatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagcccctgacaaacaactgt-ccttctgggcggtgcacttgtcctgggctgggccagcatcagttgggacggtgggataaaggcctcgggaatgtgactccgttca---ggagtgttatagccctgggtgcaatgccgcccgacccgactgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaatcccgtcagggatgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttccctcag----------------------------g-----------------------------------a------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_neoexcavatum_KY013643 ----------------------------------------------------cagcggaga---------caacaggg-att-gcccc-agtaacggcgagtgaagcggcatgagctcaaatttgaaatctggcgcct--ccggcgtccgagttgtaatttggag-aggcatctttggga-ggggcccagcctaagctccttggaacagcacgtcacagagggtgagaatcccgttctcggccggatgt--tccctcccgtaaaaagcgccttcgatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagcctctgacaaacaaccgt-ccttctgggcggtgcacttgtcctgggctgggccagcatcagttgggacggcgggataaaggcctggggaatgtgactcctctga---ggagcgttatagccccgggtgcaatgccgcccgacccgactgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgtcaggggtgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctgg-tcctgcagatttttctc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_malacodermum_JQ925702 ----------------------------------------------------aagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcg-ct--ccggtgtccgagttgtaatttggag-aggcatcttccgga-ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgtgcatggctggatgt-gccccttcattaggtagtgccttctatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcgaacaactat-ccttctggatggtgcacttgtccagggctgggccagcatcagttaggacgggggaataaaggctcggggaatgtgactcctcgtt---ggagtgttatagcctcgggtgccatccctcctgtcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctgcagaccctcacgcgtaataaaagtgaatggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaa-ttgggta------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_pustulatum_MK211308 ----ttgacctcgaatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ccggtgtccgagttgtaatttggag-aggcatcttccgga-ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgtgcatggctggatgt-gccccttcattaggtagtgccttctatgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcgaacaactat-ccttctggatggtgcacttgtccagggctgggccagcatcagttaggacgggggaataaaggctcggggaatgtgactcctcgtt---ggagtgttatagcctcgggtgccatccctcctgtcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctgcagaccctcacgcgtaataaaagtgaatggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_wenchuanense_MH115327 -------------------------ttacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacRgggRctttgcccctagtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ctggtgtccgagttgtaatttggag-aggtatcttccgga-ggggtccagcctatgttccttggaacaggacatcacagagggtgagaatcccgttcgtggctggatgt--accctttagtaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgaKaccagactcagccttgggcaaacaacttc-ccttttgggtggtgcacttgcccttggctgggccagcatcagttaggacggtggaataaaggctcggggaatgtgactccgctca---ggagtgttatagcctcgggtgccatcccacctgtcctgactgtggaccgcg-cttcRgctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggttacagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata--gggcgaaagacttaatcgaact----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_rufum_f._lucidum_MT270606 -----------------------------------------------------------------------------------gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ccggtgtccgagttgtaatttggag-aggcgtcttccgga-ggggtccagcctatgttccttggaacaggacatcatagagggtgagaatcccgttcatggttggatgt--acccttcagtaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggca---tgcctc-ccttctgggtggcgtacttgtccttggctgggccagcatcagttaggacggtggaataaaggcctggggaatgtgactcctctga---ggagtgttatagcctcgggtgccatcctgcctgccctgactgtggaccgcg-ctttggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctacagacccttacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaag--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_zambonelliae_MW642207 --------------------------------------ttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gccct-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgtccgagttgtaatttggag-aggcatcttccgga-ggggtccagcccatgttccttggaacaggacatcacagagggtgagaatcccgttcgtggttggatac--acccttcagtaggtggtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccctgggca---aacctc-ccttcggggtgg-atacctgcccttggctgggccagcatcagttaggacggtggaataaaggcctggggaatgtgactccactca---ggagtgttatagcctcgggtgccatcccacctgtcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Tuber buendiae NG_073829' --------------------------------------------------------ggaggaaaagaaaccaacaggg-att-gccct-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ctggtgtccgagttgtaatttggag-aggcatcttccgga-ggggcccagcctatgttcctaggaacaggacatcacagagggtgagaatcccgttcatggctggatgt--acccttcagtaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaactgt-ccttctggatggtgcacttgccctcggctgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgcttt---ggagtgttatagcctcaggtgccatcccacctggcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcggaataaaagtgaacggaggtgggaaccctgtgaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtc-aatttgggtatat-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaaatttccctc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_melosporum_JN392202 -----------------------------------------------------------------------------------------------ggcgagtgaagcggc-aaagctcaaatttgaaatctggcacct--ctggtgtccgagttgtaatttggag-aggcatcttccgga-ggggtccagcctatgttccttggaacaggacgtcatagagggtgagaatcccgttcatggctggatgt--acccttcatcaggtagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcagccttgggcaaacaactgt-ccttctggatggtgcacttgcccttggctgggccagcatcagttaggacggtggaataaaggcctggggaatgtgactccactta---ggagtgttatagcctcaggtgccatcccgcctggcctgactgtggaccgcg-cttcggctaggatgctggcgtaatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctacagaccctcacgcgtaataaaagtgaacggaggtgggaaccctatacggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttccctcaggatagcagtaacgatctcagttttatgaggtaaagcgaatgattagaggccttggggttgtaacaac-----------------------------------------------------------cttaacctattctcaaactttaaatatgtaagaagtccttgttgcttaattgaacgtggacatttgaatgtaccgttactagtgggcca Tuber_furfuraceum_GU979090 ----------------------------------------------------------------------------------------------------gtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgtccgagttgtaatttggag-aggcatcttccgaa-ggggtctagcctatgttccttggaacaggacatcgcagagggtgagaatcccgttcatggctggatacatacccttcagtaggtagtgctttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaatctt-ccttctgggtggtgcacttgctcttggctgggccagcatcagttagggtggtggaataaaggcctgtggaatgtgactccacttt---ggagtgttatagcctcgggcgccatcccacctgccctgactgtggaccgcg-ctttggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_huidongense_GU979099 ---------------------------------------taagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgtccgagttgtaatttggag-aggcatcttccgaa-ggggtccagcctatgttccttggaacaggacatcgcagagggtgagaatcccgttcatggctggatacatatccttcagtaggtagtgctttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgctcttggctgggccagcatcagttagggtggtggaataaaggcctgtggaatgtgactccacttt---ggagtgttatagcctcgggtgccatcccacctgccctgactgtggaccgcg-ctttggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctatagaccctcacgcgtaataaaagtgaacggaggtgggaaccctgagaggggtgcactatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_sinoalbidum_MH115299 ----------------------------------------------------------agggagagaa-cca-caggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgtccgagttgtaatttggag-aggcatcttccgca-ggcgttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggacat--accctgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctta---ggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaaccttgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-ttcaattgc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_microspiculatum_MH115316 -----------------------------------aact--agcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ccggtgttcgagttgtaatttggag-aggcatcttccgca-ggggttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggacgt--accccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctgggtggtgcacttgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgctta---ggagtgttatagccccgggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaatt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_huidongense_GU979097 -----------------------------------------agcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcatct--ctggtgtccgagttgtaatttggag-aggcatcttccgca-ggggttcagcctatgttcctttgaacaggacatcacagagggtaagaatcccgttcatggctggacgt--gccccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctggttggtgcaattgctcttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgcttt---ggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatc---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_umbilicatum_GU979086 -----------------------------------------------------------------------------------------------------tgaagcggcaaaagctcaaatttgaaatctggcatct--ctggtgtccgagttgtaatttggag-aggcatcttccgta-ggggttcagcctatgttcctttgaacaggacatcacagagggtgagaatcccgttcatggctggacgt--gccccgcagtaggtagtgccttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagactcagccttgggcaaacaacttt-ccttctggttggtgcaattgcccttggttgggccagcatcagttaggacggtggaataaaggcttggggaatgtgactccgcttt---ggagtgttatagcctcaggtgccatcccgcctgtcctgactgtggaccgcg-cttcggctaggatgctggcataatggtctttagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcaagtgtttgggctctagaccctcacgcgtaataaaagtgaacggaggtgggaacctcgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_alcaracense_MN953777 -------------------------------------cttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaagagctcaaatttgaaatctgacgccacgccggcgtccgagttgtaatttggag-gggcatcttcaggagggggcccggcctatgtcccttggaacagggcgtcgcagagggtgagaatcccgtccttggccggaccg--tccctctggctcgaagtgccttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatacgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccattgactaacagctgt-ccttgtgggcggtgcacttgtccttggccgggccagcatcggttgggacggtgggacaaaggcccggggaatgtgactccctcgt---ggagtgttatagcccctggtgaaatgccgcctgtcccgaccgaggaccgcg-ctccggctaggatgctggcgcaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgtctggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcgaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttcccct------------------------------c-----------------------------------agtaa-------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_aestivum_KF523368 ------------------------------------------------------------------------------------------gtaacggcgagtgaagcggcaagagctcaaatttgaaatctggcgccccgccggcgtccgagttgtaatttggag-aggcatcttcaggagggggcccggcctatgttccttggaacagggcgtcgcagagggtgagaatcccgttcttggccggacag--cccctccggtgtgcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatatgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccatggactaacagctgtcccttctgggcggtgcacttgtccttggccgggccagcatcggttgggacggcgggacaaaggctgggggaatgtgactcccttga---ggagtgttatagcccccggcgccatgccgcccgccccgaccgaggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgcgaggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttccctcaggat-----------------------agc-----------------------------------agtaacgaatctcagttttatgaggtaaagcgaatgattagaggccttggggttgtaacaaccttaacctattctcaaactttaaatatgtaagaagtccttgttgcttaattgaa---------------------------------cg Tuber_aestivum_var._uncinatum_MG385627 --------------------------------------------------------------------------------------------aacggcgagtgaagcggcaagagctcaaatttgaaatctggcgccccgccggcgtccgagttgtaatttggag-aggcatcttcaggagggggcccggcctatgttccttggaacagggcgtcgcagagggtgagaatcccgttcttggccggacag--cccctccggtgtgcagtgtcttccacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatatgggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagcacgtgaaattgttgaaagggaagcgcttgagaccagactcggccatggactaacagctgtcccttctgggcggtgcacttgtccttggccgggccagcatcggttgggacggcgggacaaaggctgggggaatgtgactccctcga---ggagtgttatagcccccggcgccatgccgcccgccccgaccgaggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggcttcaaaccctagcgcgtaatgaaagtgaacggaggtgggaaccccgcgaggggcgcaccatcgaccgatcctgatgtcctcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-ggg------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_canaliculatum_DQ191675 -------------------------------------cttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcagaagctcaaatttgaaatctggcgtct--gcgacgcccgagttgtactttggag-aggcatcttccgga-ggggcccagcctatgtgccttggaacaggacgtcacagagggtgagaatcccgttctcggccggatgt--cccctcccgtatgcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcgacctttgacgaacaacggtcccttccgggcagtgcactcgtcatcggtcgggccagcatcggttgggacggcgggataaaggtccggggaatgtgactccgtcca---ggagtgttatagccccgggcgccatgctgcccgtcccgaccgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgcagggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttccctcag----------------------------g-----------------------------------a------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_macrosporum_FJ809838 tgggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcagaagctcaaatttgaaatctggcgtct--gcggcgcccgagttgtactttggag-aggcatcttccaga-ggggcccggcctatgtgccttggaacaggacgtcacagagggtgagaatcccgttctcggccggatgt--cccctccgctattcagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagactcggcctttgacaaacaatagt-ccttctgggctgtgcacttgtcatcggctgggccagcatcggttgggacggcgggataaaggtccggggaatgtgactccttcca---ggagtgttatagccccgggcgccatgccgcccgtcccgaccgtggaccgcg-cttcggctaggatgctggcgtaatggtcttcagcggcccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctccaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccccgcagggggagcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtat------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_anniae_JQ925681 ----------------------------------------------------------------------------gg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctaacacct--ctggtgttcgagttgtactttggag-aggcatcttctgga-ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggatgt--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagatcagagtcggcctttggcaaacaactgtcccttctgggtggtgcacttgtcattggctgggccagcatcggttgggacggcaggataaaggcctggggaatgtgactcctctat---ggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgagaggggcgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggc?aaagac-taatcgaacca-tctagta?ctggttcctgcc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_jinshajiangense_KX575846 -----------------a---------------------ctagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatct--ctggtgttcgagttgtactttggag-aggcatcttccgga-ggggcccagcttatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggatgt--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaacttc-ccttctgggtggtgcacttgttattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactcctttat---ggagtgttatagccccaggcggcatgctgtctgccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaatcctgcaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgagaccccccctccag--------------------------g-----------------------------------aa----------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_liyuanum_KT067698 -------------------------------------------------------cggaccagga-----caacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatct--ctggtgtccgagttgtactttgaag-aggcatcttctgga-ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggatgt--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttctgggtggtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactccttcat---ggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cttcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgagctctcctccagag------------------------gag-----------------------------------ag----------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_borchii_JQ925682 --------------------------------------------------------------------------aggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ctggtgtccgagttgtactttggag-aggcatcttctgga-ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggatat--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagttagcctttggcaaacaactat-ccttctggatggtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactcctttat---ggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cttcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctctaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgacc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_brunneum_KT897478 --ggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--ctggtgtccgagttgtactttggag-aggcatcttctgga-ggggcccggcctatgtgccttggaacaggacgtcacagagggtgagaatcccgtccttggccggatgt--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttttgggtagtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccaggaaatgtgactcctttat---ggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggta------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_pseudoseparans_KT897480 --ggttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcgcct--atggtgtccgagttgtactttggag-aggcatcttctgga-ggggcccggcctatgtgccttggaacaggacgtcatagagggtgagaatcccgtccttggctggatgt--tccctcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttttgggtagtgcacttgtcattggttgggccagcatcggttgggacggcaggataaaggcccagggaatgtgactcctttat---ggagtgttatagccccaggcggcatgctgtcagccccgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggctccaaaccctcacgcgtaatgaaagtaaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggta------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Tuber_californicum_JQ925685 ----------------------------------------------------------------------------gg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctaacgcct--ctggtgttcgagttgtaatttggag-aggcatcttccgga-ggggcccagcctatgtgccttggaacaggacgtcatagagggtgagaatcccgttcttggctggatgt--tccctcctttatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatactggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaattgt-cctttggggcggtgcacttgtcattggttgggccagcatcgattgggacggtgggataaaggcttgggaaatgtgactccattac---ggagtgttatagtcccaggtgtcatgccatcagtcccgatcgtggaccgcg-ctttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggcttcaaacccttacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Tuber floridanum NG_064427' --------------------------------------------------------------------------------------tt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacatct--ctgatgttcgagttgtaatttggag-agacatcttctgga-gggacccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggatgt--tccctcctccatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatactggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagatcagagtcagcctttggcaaacaactgt-ccttatgggcagtgcacttgtcattggttgggtcagcatcggttgggatggtgggataaaggcttgggaaatgtgactcctttat---ggagtgttatagtcctgggcggcatgccatcagtctcgaccgtggaccgcg-cctcggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctgg-tcctgc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Tuber hubeiense NG_059582' ------------------------tttacccgcggaacttaagcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctc-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacaccc--atggtgttcgagttgtaatttggag-aggcatcttccgga-gtggcccagcctatgtaccttggaacaggacgtcatagagggtgagaatcccgttcttggctggatgt--tcactcccgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcagcctttggcaaacaactgt-ccttctgggtggtgcacttgtcattggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactcctttat---ggagtgttatagtcccaggtggcatgccatcagtctcgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaccct-ttcaagggt------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_lusitanicum_MT705332 ---------------------------------------taagcatatcaataagcggaggaaaagaaaccaacgggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctgacgcctt-ctggtgttcgagttgtaatttggag-aggcatcttccgga-gtggcccagcctatgtaccttggaacaggacgtcatagagggtgagaatcccgttcttggctggatgt--tcactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaacagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaattgt-ccttctgggcggtgcacttgtcattggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactcctttat---ggagtgttatagtcccaggtggcatgccatcagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcgagtgtttgggctttaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgagaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatagggggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagtttcccctc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_microverrucosum_KT067696 ------------------------------------------------------gtactcggacaaaaaccaacagggaatt-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgttcgagttgtaatttggag-aggcatcttctgga-gtggcccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggatgt--tcactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaactgt-tcttctgagcggtgcacttgtcatcggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactcctttat---ggagtgttatagtcccaggtggcatgtcaccagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag--ggcgaaagac-taatcgaaccattctgatggc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Tuber_pseudomagnatum_KP276193 ------------------------------------act--agcatatcaataagcggaggaaaagaaaccaacaggg-att-gcctt-agtaacggcgagtgaagcggcaaaagctcaaatttgaaatctggcacct--ctggtgttcgagttgtaatttggag-aggcatcttctgga-gtggcccagcctatgtgccttggaacaggacatcatagagggtgagaatcccgttcttggctggatgt--tcactcctgtatgtagtgtcttctacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggcgagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaatagagtcaaaaagtacgtgaaattgttgaaagggaagcgcttgagaccagagtcaacctttggcaaacaactgt-tcttctgagcggtgcacttgtcatcggttgggccagcatcggttgggacggtgggataaaggcttgggaaatgtgactcctttat---ggagtgttatagtcccaggtggcatgtcaccagtcccgaccgtggaccgcg-ccttggctcggatgctggcttaatggtcttcagcgacccgtcttgaaacacggaccaaggagtctaacgtctatgcaagtgtttgggcttcaaaccctcacgcgtaatgaaagtgaacggaggtgggaaccctgaaaggggtgcaccatcgaccgatcctgatgtcttcggatggatttgagtaggagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtatag-gggcgaaagac-taatcgaacca-tctagtagctggttcctgccgaagttcccctcaggaaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN mrbayes; outgroup Candida_broadrunensis_KY106372; charset locus1 = 1 -1195; charset excludedchars = 1 -101 894 -1195; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000PezizomycetesLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 5 temp = 0.2 samplefreq = 5 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = 000PezizomycetesLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1195; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1195; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1195; END; BEGIN TREES; Title 'Fig. 7. Overview Pezizomycetes LSU phylogeny'; ID 017ba61ac40f17; LINK Taxa = Taxa; TRANSLATE [0] 1 Candida_broadrunensis_KY106372, [1] 2 Tuber_excavatum_DQ191677, [2] 3 Tuber_neoexcavatum_KY013643, [3] 4 Tuber_malacodermum_JQ925702, [4] 5 Tuber_pustulatum_MK211308, [5] 6 Tuber_wenchuanense_MH115327, [6] 7 Tuber_rufum_f._lucidum_MT270606, [7] 8 Tuber_zambonelliae_MW642207, [8] 9 'Tuber buendiae NG_073829', [9] 10 Tuber_melosporum_JN392202, [10] 11 Tuber_furfuraceum_GU979090, [11] 12 Tuber_huidongense_GU979099, [12] 13 Tuber_sinoalbidum_MH115299, [13] 14 Tuber_microspiculatum_MH115316, [14] 15 Tuber_huidongense_GU979097, [15] 16 Tuber_umbilicatum_GU979086, [16] 17 Tuber_alcaracense_MN953777, [17] 18 Tuber_aestivum_KF523368, [18] 19 Tuber_aestivum_var._uncinatum_MG385627, [19] 20 Tuber_canaliculatum_DQ191675, [20] 21 Tuber_macrosporum_FJ809838, [21] 22 Tuber_anniae_JQ925681, [22] 23 Tuber_jinshajiangense_KX575846, [23] 24 Tuber_liyuanum_KT067698, [24] 25 Tuber_borchii_JQ925682, [25] 26 Tuber_brunneum_KT897478, [26] 27 Tuber_pseudoseparans_KT897480, [27] 28 Tuber_californicum_JQ925685, [28] 29 'Tuber floridanum NG_064427', [29] 30 'Tuber hubeiense NG_059582', [30] 31 Tuber_lusitanicum_MT705332, [31] 32 Tuber_microverrucosum_KT067696, [32] 33 Tuber_pseudomagnatum_KP276193; TREE 'Fig. 7. Overview Pezizomycetes LSU phylogeny' = (1:0.3005073,(2:0.01429737,3:0.01423077):0.02594649,((4:0.000923713,5:0.0008592636):0.02595537,(6:0.01234496,(9:0.01349605,10:0.01340805):0.006453693,(11:0.005552756,12:0.003830865):0.01929753,7:0.02272477,8:0.01828092,(13:0.003456373,(14:0.005873427,(15:0.003485192,16:0.003449354):0.008021895):0.003737922):0.02041445):0.006294546):0.04232694,((17:0.04296319,(18:0.001494196,19:0.002556991):0.006524519):0.04926221,((20:0.01502076,21:0.01275627):0.02275349,((22:0.01314944,23:0.01270875,24:0.005223263,(25:0.009706439,(26:0.004595371,27:0.002167744):0.004945637):0.004373126):0.01145874,((28:0.02014429,29:0.02488127):0.004269077,((30:0.008019066,31:0.006906115):0.004586929,(32:0.0008592249,33:0.0009017938):0.01307855):0.004924209):0.01525806):0.04092828):0.008485018):0.008649186); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630594743992; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6395637667738828598; tell It; setDefaultOrder 0 1 2 3 4 5 10 11 6 7 8 9 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2888428197047293439; mqVersion 370; checksumv 0 3 700716452 null getNumChars 1195 numChars 1195 getNumTaxa 33 numTaxa 33 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 612017.0 sumSquares -3.520561106467468E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 962 911; setLocation 873 162; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6395637667738828598 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6395637667738828598; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 703 839; setLocation 873 162; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6395637667738828598 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017ba61ac40f17; toggleUseWeights off; endTell; setAssignedID 2690.1630579380979.5576010704840535013; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 703 839; setLocation 873 162; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.3005073,(2:0.01429737,3:0.01423077):0.02594649,((4:0.000923713,5:0.0008592636):0.02595537,(6:0.01234496,7:0.02272477,8:0.01828092,(9:0.01349605,10:0.01340805):0.006453693,(11:0.005552756,12:0.003830865):0.01929753,(13:0.003456373,(14:0.005873427,(15:0.003485192,16:0.003449354):0.008021895):0.003737922):0.02041445):0.006294546):0.04232694,((17:0.04296319,(18:0.001494196,19:0.002556991):0.006524519):0.04926221,((20:0.01502076,21:0.01275627):0.02275349,((22:0.01314944,23:0.01270875,24:0.005223263,(25:0.009706439,(26:0.004595371,27:0.002167744):0.004945637):0.004373126):0.01145874,((28:0.02014429,29:0.02488127):0.004269077,((30:0.008019066,31:0.006906115):0.004586929,(32:0.0008592249,33:0.0009017938):0.01307855):0.004924209):0.01525806):0.04092828):0.008485018):0.008649186);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2888428197047293439 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 703 839; setLocation 873 162; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;