#NEXUS [written Thu Sep 02 17:16:16 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS 'Absidia panacisoli NG_063948' Phytophthora_sansomea_EU080275 Phytophthora_medicaginis_EU080695 Phytophthora_trifolii_EU080088 Phytophthora_cryptogea_HQ665238 Phytophthora_erythroseptica_EU079832 Phytophthora_richardiae_EU079542 Phytophthora_kelmania_EU079610 Phytophthora_kelmanii_MT210486 Phytophthora_pseudocryptogea_LC595831 Phytophthora_cinnamomi_KX251816 Phytophthora_heveae_KX251116 Phytophthora_aysenensis_MN557839 Phytophthora_capsici_KX250640 Phytophthora_glovera_KX250654 Phytophthora_mengei_KX250661 Phytophthora_mexicana_KX250675 Phytophthora_tropicalis_HQ665233 Phytophthora_citricola_EU080240 Phytophthora_acerina_KX250717 Phytophthora_inflata_KX250773 Phytophthora_multivora_KX250780 Phytophthora_personensis_MT159417 Phytophthora_pini_KX250815 Phytophthora_plurivora_KX250836 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1357; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Absidia panacisoli NG_063948' acccgctgaacttaagcatatcaataagcggaggaaaagaaaataacaatgattcccccagtaacggcgagtgaacagggaaaagctcaaagttggaacctcctggcc--ttaggtctggcggattgtaaactaaagctctagagtagtttggctggcccggtaaaaaagttctctggaaagggacgacaaagagggtgaaatccccgtttttggccggagcatagtctcacgtttg-ctctttagcgaagagtcaggttgtttggtattgcagcctaaagttggaggtaaatctctcctaaagctaaatattgacgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcaccttgaaaagggggtcaaaaagtacgtgaaattgctgaaagggaac--------------ggtat------gaaatcagactgtctttttggtaatca-------gcctgggctttg---------------gc----ctgggt-------------gcacttgccagta---agtac----------agcctacgacaatttga--agcgtgggaaaaaat--cagggggaatgtggcctcggcttcg-gcggaggtgttatagccccttgaa--aaataccatgctttggattgag--gactgcagtgagccattagggatgaactgtaggcgcttagtttcggtaaggaaggaatctctgcttcgggtg-gtgccttttttctcgggattaacccgtttactttttctttttctcgcttaggtcgtaggcataatgattttatatcacccgtcttgaaacacggaccaaggagtccaccatgattgcgagtctttgggtgtagaaacccatgggcggaaggaaa-----------------ctgaccaagatatgaa--ggcgcaa----------gc----tggcaatatcctccagcgaggacgttttatactgaattgactgagagaaagcaattatgatgggacccgaaagatggtgaactatacttgaatagggtgaagccagaggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgagtataggggcgaaagactaatcgaaccatctagtagctggttcctgccgaagtttccctcaggatagcagaaactca--caaagcagttttatggggtaaagcgaatgattagaggccttgggggcgaaatgcccttaacctattctcaaactttaaatatgtaagacgcctttctttcttaattgaagttgggcctttgaatgcagagtttctagtgggccatttttggtaagcagaactggc- Phytophthora_sansomea_EU080275 -cccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgcgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tgcgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgtgctttagcttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_medicaginis_EU080695 -cccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcttgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgcgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtgtgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tgcgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgcgctttagcttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_trifolii_EU080088 -cccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgaatgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgcgtgctgcgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtgtgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tgtgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgtgtgctttagcttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_cryptogea_HQ665238 ---cgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggYa---tatttcattggYgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tRtgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgYgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_erythroseptica_EU079832 --ccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggta---tatttcattggtgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tgtgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgcgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_richardiae_EU079542 -cccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggta---tatttcattggtgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tgtgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgcgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_kelmania_EU079610 -cccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tatgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgtgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggcg Phytophthora_kelmanii_MT210486 -----------------------------------------actaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tatgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgtgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctc--a--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phytophthora_pseudocryptogea_LC595831 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagtgagggcgctcggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgggtggc--tcttgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcgtgcgtgtgctttggcagtggcttttttggctgcgctgggcgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtgag-tatgggtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgtgctgtaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_cinnamomi_KX251816 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgtgttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgcgcgtgcgtgtgctgtggcagtggcttttttggctgcgctcggtgcgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-ttcgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgcg--tg-gattgg--tgcgggctttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcttcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_heveae_KX251116 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggatgagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcacttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagttgc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagtgtgtgcgtgcgtgtgctgtggcagtggcttttttggctgcgctcggtgtgtgtgctgtgtgtgcttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgct-tgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtcttcgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggctttaacttgttgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgtgggcttctgtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_aysenensis_MN557839 -------------------------------------------------ggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtgg-------------------------------------------------- Phytophthora_capsici_KX250640 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_glovera_KX250654 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgcgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_mengei_KX250661 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagtgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_mexicana_KX250675 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcatgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggctttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_tropicalis_HQ665233 ---cgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatccgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggcgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgtggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gattga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttatttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggc- Phytophthora_citricola_EU080240 --ccgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcctggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggc- Phytophthora_acerina_KX250717 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_inflata_KX250773 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_multivora_KX250780 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_personensis_MT159417 ---cgctgaacttaagcatatcaataagcggaggaaaagaaactaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaagttgctagtgggccatacggggtaagctcgtctggc- Phytophthora_pini_KX250815 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- Phytophthora_plurivora_KX250836 ------------------------------------------ctaacaaggattcccctagtaacggcgagtgaagcgggaagagctcaagcttaaaatctccgtgcaagttttgcgcggcgaattgtagtctatagaggcgtggtcagcgtgggcgcttggg--gcaagttccttggaagaggacagcatggagggtgatactcccgttcatccctgagtggc--tcgtgcgtacgacccgttttctttgagtcgcgttgtttgggaatgcagcgcaaagtaggtggtaaattccatctaaagctaaatattggtgcgagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttgaaaagagagttaaagagtacctgaaactgctgaaagggaaccgaatcgtttccagtgtctataatctgtggca---tatttcattggcgagcgtttgcgtgcgtgtgctgtggcagtggcttttttggctgcgcccggtgtgtgtgctgtgagtgtttgctggtgccctgtgctgcggtgggacgtcaaggtcagttcgtatgctgcgggaaatggctgccgaggaggtagggcttacgctccgcgtttgtctgttatatcttggtggacgagtcgtcgcggttgggactgaggtgcctacaacgtgctttt--gagtggg-tttgtgtctccgtgtgcgccgtgtgcggatagcttgctatgcgtgtgtggttgtgtg--tg-gatgga--tgcgggccttaacttgtcgccgttcgggacgttgacgaaatggagcgatccgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcaagtgttagggtgtggaaaccccagcgcgaaatgaaagtgaagggcagcgcaagttgtctgaggtaggaaacgttgcgggcctcggtctgcggcgtggcactatcgaccgatcatgaaccttcgtggtgaaagatttgagtttgagcacatatgttggtacccgaaagatggtgaactatgcctgagtagggtgaagccaggggaaactctggtggaagctcgtagcgattctgacgtgcaaatcgatcgtcaaacttgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaaatttccctcaggatagcagcaacttttttacgatagttttatgaggtaaagcgaatgattagaggattcggggaagaaacttcctcgacctattctcaaactttaaatctgtaagacctgcaggtttcttaattgaacttgtggatgtgaatatcaa------------------------------------- ; END; BEGIN mrbayes; outgroup 'Absidia panacisoli NG_063948'; charset locus1 = 1 -1357; charset excludedchars = 1 -49 1160 -1357; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000OomycotaLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 1000000000 nchains = 4 printfreq = 5 temp = 0.2 samplefreq = 5 savebrlens = yes stoprule = yes stopval = 0.01 Relburnin = yes BurninFrac = 0.25 filename = 000OomycotaLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1357; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1357; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1357; END; BEGIN TREES; Title 'Fig. 8. Overview Phytophthora LSU phylogeny'; ID 017ba61b588519; LINK Taxa = Taxa; TRANSLATE [0] 1 'Absidia panacisoli NG_063948', [1] 2 Phytophthora_sansomea_EU080275, [2] 3 Phytophthora_medicaginis_EU080695, [3] 4 Phytophthora_trifolii_EU080088, [4] 5 Phytophthora_cryptogea_HQ665238, [5] 6 Phytophthora_erythroseptica_EU079832, [6] 7 Phytophthora_richardiae_EU079542, [7] 8 Phytophthora_kelmania_EU079610, [8] 9 Phytophthora_kelmanii_MT210486, [9] 10 Phytophthora_pseudocryptogea_LC595831, [10] 11 Phytophthora_cinnamomi_KX251816, [11] 12 Phytophthora_heveae_KX251116, [12] 13 Phytophthora_aysenensis_MN557839, [13] 14 Phytophthora_capsici_KX250640, [14] 15 Phytophthora_glovera_KX250654, [15] 16 Phytophthora_mengei_KX250661, [16] 17 Phytophthora_mexicana_KX250675, [17] 18 Phytophthora_tropicalis_HQ665233, [18] 19 Phytophthora_citricola_EU080240, [19] 20 Phytophthora_acerina_KX250717, [20] 21 Phytophthora_inflata_KX250773, [21] 22 Phytophthora_multivora_KX250780, [22] 23 Phytophthora_personensis_MT159417, [23] 24 Phytophthora_pini_KX250815, [24] 25 Phytophthora_plurivora_KX250836; TREE 'Fig. 8. Overview Phytophthora LSU phylogeny' = (1:0.4166053,(11:0.006239448,12:0.007615447,((13:0.0006126898,14:0.000584514,15:0.001382529,16:0.001700777,17:0.00206881,18:0.0005909144):0.002972713,(19:0.0008341919,(20:0.0005931517,21:0.000587839,22:0.0006027353,23:0.0006033326,24:0.0006318966,25:0.0006069303):0.001395105):0.002833751):0.006879835):0.00974205,(5:0.0005879737,(6:0.000553011,7:0.0006340385):0.002691091,(8:0.000630711,9:0.0005982191,10:0.0005983434):0.00131482):0.002083283,((3:0.002491871,4:0.003388937):0.00138218,2:0.001632259):0.002549094); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630595776898; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2554797503921194788; tell It; setDefaultOrder 0 2 1 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8161425025651927261; mqVersion 370; checksumv 0 3 4259332997 null getNumChars 1357 numChars 1357 getNumTaxa 25 numTaxa 25 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 731125.0 sumSquares -4.65411352979692E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 886 875; setLocation 1055 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2554797503921194788 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2554797503921194788; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 627 803; setLocation 1055 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2554797503921194788 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017ba61b588519; toggleUseWeights off; endTell; setAssignedID 2876.1630579418271.4888803613072352080; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 627 803; setLocation 1055 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.4166053,(2:0.001632259,(3:0.002491871,4:0.003388937):0.00138218):0.002549094,(5:0.0005879737,(6:0.000553011,7:0.0006340385):0.002691091,(8:0.000630711,9:0.0005982191,10:0.0005983434):0.00131482):0.002083283,(11:0.006239448,12:0.007615447,((13:0.0006126898,14:0.000584514,15:0.001382529,16:0.001700777,17:0.00206881,18:0.0005909144):0.002972713,(19:0.0008341919,(20:0.0005931517,21:0.000587839,22:0.0006027353,23:0.0006033326,24:0.0006318966,25:0.0006069303):0.001395105):0.002833751):0.006879835):0.00974205);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8161425025651927261 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 627 803; setLocation 1055 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;