#Nexus begin taxa; TITLE Taxa; dimensions ntax=56; taxlabels Chlorella_variabilis_NC64A Chlamydomonas_moewusii_SAG11_16f Vitreochlamys_nekrassovii_SAG11_10 Eudorina_elegans_NIES720 Eudorina_elegans_NIES719 Eudorina_minodii_NIES856 Eudorina_elegans_NIES456 Volvox_tertius_NIES544 Volvox_ovalis_NIES2569 Volvox_africanus_NIES863 Volvox_obversus_NIES868 Volvox_carteri_weismannia_NIES866 Volvox_carteri_nagariensis_HK10 Volvox_carteri_kawasakiensis_NIES732 Pleodorina_japonica_UTEX2523 Volvox_aureus_NIES541 Eudorina_elegans_NIES717 Eudorina_illinoisensis_NIES460 Eudorina_peripheralis_NIES725 Eudorina_unicocca_SAG24_1c Pleodorina_indica_NIES736 Pleodorina_starrii_NIES1362 Pleodorina_starrii_NIES1363 Volvox_gigas_NIES867 Eudorina_elegans_NIES568 Eudorina_elegans_NIES458 Eudorina_elegans_FACHB2321 Astrephomene_gubernaculifera_NIES418 Astrephomene_perforata_NIES564 Yamagishiella_unicocca_FACHB2364 Volvox_barberi_NIES730 Gonium_Pectorale_NIES2863 Gonium_octonarium_NIES851 Gonium_viridistellatum_NIES654 Gonium_quadratum_NIES653 Gonium_multicoccum_NIES737 Pandorina_colemaniae_FACHB2361 Pandorina_colemaniae_NIES572 Chlamydomonas_debaryana_SAG70_81 Chlamydomonas_schloesseri_SAG2486 Chlamydomonas_reinhardtii_CC503 Chlamydomonas_globosa_SAG81_72 Volvulina_boldii_NIES893 Vitreochlamys_aulata_NIES878 Vitreochlamys_aulata_SAG80_81 Volvulina_steinii_SAG90_1 Chlamydomonas_debaryana_SAG11_55a Pandorina_morum_NIES890 Pandorina_morum_FACHB2362 Volvulina_compacta_FACHB2337 Volvulina_pringsheimii_NIES895 Volvulina_compacta_NIES582 Platydorina_caudata_NIES728 Vitreochlamys_ordinata_NIES882 Basichlamys_sacculifera_NIES566 Tetrabaena_socialis_N571 ; end; BEGIN CHARACTERS; TITLE gene002888; LINK TAXA = Taxa; DIMENSIONS NTAX=68 NCHAR=288; FORMAT DATATYPE=PROTEIN GAP=- MISSING=?; MATRIX Chlorella_variabilis_NC64A -MAQQNLRSALAYCVNQVRSFDYTNYVWTIQMPKELRAPLIALRAFNVELTQIPDNVKQEQLM--QIRMQWWRDAVKSAYTDKPQPNPVIQALHAATQSHLLRMVSTLEADYMRAQPPQSLEQLEQYAEGSSSQLLYLQGRVAGVDDEHFDHAASHLGKAVGIANLLRGTAYHAARRRCYLPSDLCMSEGVSDEDVLRGQNTDNVSNVVFQVATQAKGHLDEARALSKQLPAEAKPLMLPAAAVDLYLKALEKHEFNAFAPQLQS----GFTPLWHQLLVKYNLMLGR Chlamydomonas_moewusii_SAG11_16f SASPEQIQSAFAYCVQQVRAYDKDNYGWMVQLPKELRRPVFTLRAFNIETALIGEHVASKEAPLVQIRFQWWRDALDTMFMGAAPKHPVLTALGAVSKYNLKKIIDTREADLLDAQPPLSIDGLEKYAEGTASQLLYLQLGAAGVASREADHAASHLGKAVGISTLLKGTAYHARTRRSYLPLDLCAEHGVSQEDVYSGNVSEGMRDVVHKVASAAKAHLDEARALQPKVPESARPLMLSSVACLSYLEALEKCEFDPFHTSLAK----GISPLWHALQIKWHMLNKT Vitreochlamys_nekrassovii_SAG11_10 SSMPDSIKAAFGYCVSEVKQHDYRNYVWIAQLPKELRPALFALRAFNVETALVADQVKSKEAPLVALRFQWWRDAVAAAFDGRPPQQPVALALAHVTRYPFKRILDAREADVLDNQPPLDLAALEQYAESTAAQLLYLQLGAAGVRSKEADHAASHLGRAVGIATLLQGSAVHAAGRRSYLPVELCAQHKVSQEDVYSGVATDGLRDVVHSVASLAKGHLDEARRLQPSLPKQACAVMLQGVACGQYLEALEAANFDPFQQVLLQ----GSSPLRYVLAVKYHQLCGT Eudorina_elegans_NIES720 SAVPETLRPAFGFCVQQVRQYDYLNYVWVAQMPPELRPALFTLRAFNIETALIAENVRSKEAVVGQIRFQWWRDVIKAAYDGTPPNHPVALALSHVNRYCFKRIIDTREADFLDTQPPLHLQALEQYAEGTSSQLMYLQLAAAGVKNPDADHVASHLGRAAGISTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPRGAARVMLPAVGVGKYLEALEAANFNPYDPKLIREHGGGSAPLAYVLAIKWHQMRGT Eudorina_elegans_NIES719 SAVPDTLRTAFGYCVQQVRQYDYLNYVWVAQMPQELRPALFALRAFNIETALIAESVRSKEAIVGQIRFQWWRDAVKSAYEGTPPNHPVALALSHVNRYCFKRIIDTREADFLDTQPPLHLQALEQYAEGTASQLMYLQLAAAGVKNPDADHAASHLGRAAGISTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVTEGLRDVVHKVASLAKGHLDEARRLAPRLPRGAAGVMLPAVGVGQYLEALEAANFNPYDPKLIREHGGGSAPLGYVLAIKWHQLRGT Eudorina_minodii_NIES856 SAVPEPLRSAFGFCVQQVRQYDYLNYVWVAQTRKELRPALFALRAFNIETALIAENVRSKEAVVGQIRFQWWRDAIKAAYEGRPPNHPVALALAHVSRYCFKRIIDARETDFVDPQPPLHLQALEQYAEGTWSQLMYLQLAAAGVKHPDADHAASHLGRAAGISTLLRGTAAHASARRCYLPVDLCAEARVSQEDVYGGVVTEGLRDVVHQVASLAKGHLDEARRLAPRLPRNAAEVMLPSVAVGRYLEALEAANFNPYDPKLVREHGGGSAPLSYVLAIKLHQWRGT Eudorina_elegans_NIES456 SAVPESLRSAFGFCVQQVRQYDYVNYVWTAQARKELRPALFALRAFNIETALIAEHVRSKEAVVGQLRFQWWREAIKAAYDGRPPNHPVALALAHVSRYCFKRIIDSREADFVDTQPPLHLQALEQYAEGTSSQLMYLQLAAAGVKHPDADHAASHLGRAAGISTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVASEGLRDVVHKVGSLAKGHLDEARRLAPRLPPGAAEVMLPAVAIGRYLEALEAANFNPYDAKLVREHCGGSAPLSYVLAIKWHQWRGT Chlamydomonas_debaryana_SAG70_81 AAVPDGVRAAFGYCVQQVRQYDYLNYVWVAQMDKDLRPALFALRAFNIETAMVADLVRSKEPVMGQIRFQWWRDAIKSAYEERAPSHPVALALSHVSRYSFKRIIDCREADFLDPQPPLDMNALEQYAEGTASQLLYLQLSAAGIKDRDADHAASHLGRAIGITTLLRGTAAHAAARRSYLPIDMCAEARVSQEDVYSGVASEGLRDVVHQVASLAKGHLDEARRLAPRLPTGTAGLMLPALGVDRYLKALEAANFDPFDAKLLREHGGGAAPLTYALEIKWHQLRGT Chlamydomonas_debaryana_SAG11_55a AAAPDSLRKAFGYCVEQVRQYDYLNYVWVAQMPQELRPALFALRAFNIETALIADNIKSKEAIVGQMRFQWWRDAVRSAYDNQPPNHPVVQALAHVSRYSFKRIVDCREADFVDPQPPLDLRALEQYAERTASQLMYLQLAAAGIKSSDADHAASHLGRAAGICALLRGTAAHAARRRSYLPVELCAEARVSQEDIYSGEVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAPALMLPSLGVERFLAALEAANFNPFDPALASQ-GGEGAPLAYVLAVKWHHLRGT Astrephomene_gubernaculifera_NIES418 KSIPDDLRPAFGYCVQQVREYDYLNYIWVAQMPKDLRPALFALRALNVETALVAEHVRSRESVAAQLRFQWWREAVRAAYEGRPPNHPVAAALSHVSRYAFKRIIDSREADWADPQPPLDLGALEQYAEGTASQLLYLQLAAAGIKHSEADHAASHLGRAVGISTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGLMLPAVATGRYLEALEAANFDPYDARLLREHGGGGAPLPYVLAVKWHQMRGT Astrephomene_perforata_NIES564 CTMPEALRPAFGYCVQQVREYDYLNYIWVAQMPKDLRPALFALRAFNIETALVADHVRSKEAVVGQMRFHWWRDAVKAAYEDRPPSHPVALALAHVSRYCFKRIIDAREADFADPQPPLDLGALEQYAEGTASQLLYLQLAAAGIKHSEADHAASHLGRAAGITTLLRGTASHAAARRCYLPVDLCAEARVSQEDVYGKVVSEGLRDVVHKVASLAKGHLDEARRLAGRLPPGAAGLMLPAVAVDRYLGALEAANFDPYDARLLREHGGGGAPLSYVMAVKWHQMRGT Pandorina_morum_NIES890 ATVPDNIRAAFGYCVQQVRQYDYLNYIWVAQMSKDLRPALFALRAFNIETALVADTVRSKEAVVGQIRFQWWRDAVKAAYEDRPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLGALEQYAEGTASQLMYLQLAAAGIKDREADHAASHLGRAAGIITLLRGTAAHAAARRSYLPVDICAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPSAAGLMLPAVAVGRYLEALEAANFNPSDSGLLREDRGGGAPLAYVLAVKWHHWRGT Pandorina_morum_FACHB2362 ATVPDNIRAAFGYCVQQVRQYDYLNYIWVAQMSKDLRPALFALRAFNIETALVADTVRSKEAVVGQIRFQWWRDAVKAAYEDRPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLGALEQYAEGTASQLMYLQLAAAGIKDREADHAASHLGRAAGIITLLRGTAAHAAARRSYLPVDICAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPSAAGLMLPAVAVGRYLEALEAANFNPYDSGLLREDRGGGAPLAYVLAVKWHHWRGT Volvox_aureus_NIES541 AAIPEALRSAFGYCVQQVRQYDYFNYVWLAQVPPKLRPPLFALRAFNIETALVADNVRSKESVLGQIRFQWWRDSVKAAFDGHPPNHPVALALAHISRYIFKRIIDIREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLAAAGVTHRDADHAGSHLGRAVGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYAGVVSEGLRDVVHKVASLAKGHLDEARKLAPRLPPSAAGVMLPAVAVGRYLEALEARNFDPYDARLIRDHGGGSAPLSYVLAVKWHQWRGT Volvox_africanus_NIES863 AAIPEALRSAFSFCVQQVRQYDYLNYVWVAQMPKELRPPLFALRAFNIETALVVDSVRSKELVVGQIRFQWWRDAIKSAYDGRPPNHPVALALAHVSRYCFKRIIDCREADFLDPQPPLDLQALEQYAEGTASQLMYLQLAAAGIKHRDADHAASHLGRATGITTLLRGTAAHAASRRCYLPVDLCAEARVSQEDVYNGIVSEGLRDVVHKVASLAKGHLDEARRLAPRLPAGAAGVMLPAVAVGRYLQALESVNFNPYDPTLIREQGGGSAPVSYILEVKWHHLRGT Vitreochlamys_aulata_NIES878 AAMPDNVRAAFGWCVQQVRQYDYQNYVWLAQMDKELRPALFALRAFNIETALVAEQVRSKEGAVGQIRFQWWRDAVRGAFERRPPPHPVALALAHVSRYAFKRIID---ADFLDPQPPLSLAALEQYAEGTASQLLYLQLSAAGIRAAEADHAASHLGRAAGIATLLRATPAHAAGRRSYLPVDLCAQHRVSQEDVYGGQVSEGLRDVVHSVASLAKGHLDEARRLAPRLPRGAAGLMLPAVAVGRYLEALEAANFDPYDPSLRAG---SGAPLSYVVAVKWHQLRGT Vitreochlamys_aulata_SAG80_81 AAMPDNVRAAFGWCVQQVRQYDYQNYVWLAQMDKELRPALFALRAFNIETALVAEQVRSKEGAVGQIRFQWWRDAVRGAFERRPPPHPVALALAHVSRYACKRIIDTREADFLDPQPPLSLAALEQYAEGTASQLLYLQLSAAGIRAAEADHAASHLGRAAGIATLLRATPAHAAGRRSYLPVDLC-QHRVSQEDVYGGQVSEGLRDVVHSVASLAKGHLDEARRLAPRLPRGAAGLMLPAVAVGRYLEALEAANFDPYDPSLRAG---SGAPLSYVVAVKWHQLRG- Yamagishiella_unicocca_FACHB2364 VVMPEATKAAFGFCVQQVRQYDYLNYVWVSQASKDLRPALFALRAFNIETALVAGNIRSKESIVGQIRFQWWRDAIKAAYEGRPPNHPVALALTHVSRYSFKRMIDTREADFVDPQPPLDLTVLEQYAEGTASQLMYLQLSAAGVKDKEADHAASHLGRAAGITTLLRGTAAHAASRRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPAGASGVMLPAVAVGRYLEALEAANFNPYNARLVRDHSGGGAPLPYVMAVKWHQFRGT Colemanosphaera_angeleri_FACHB2363 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Pleodorina_thompsonii_NIES4126 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Gonium_Pectorale_NIES2863 --MEEPVRGAFAYCVQQVRQYDYLNYVWVSQAAKDLRPALFALRAFNIETGLVAQQVRSKEPAVGQIRFQWWRDAVRAAFEERPPAHPVALALAHVSRYSFKRIIDVREADFVDPQPPLDLSALEQYAEGTASQLLYLQLAAAGVKDREADHAASHLGRAAGIATLLRGTASHAASRRSYLPVDLCAESRVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPAGAAALMLPAVAVDRYLRDLEAANFDPWDERLQREHGGGGAPLPYVLSVKWHQLRGT Gonium_octonarium_NIES851 ATMEEPVRAAFAYCVQQVKQYDYLNYVWVAQASKDLRPALFALRAFNVETGMVAEQVRSKEAVVGQMRFQWWRDAVRAAFEGRPPSHPIALALTHVSRYSFKRIIDLREADFVDPQPPLDLGALEQYAEGTAAQLLYLQLAAAGIKDREADHAASHLGRAAGIATLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAAVMLPAVATDRYLTALEAANFDPWDARLMREHAGGGAPLPYVLALKWHQLRGT Gonium_viridistellatum_NIES654 ATMPEPVRSAFAFCVQQVRQFDYLNYVWVAQAPKELRPALFALRAFNIETGLVAEQVRSKEAVVGQIRFQWWRDAVKSAFEGNPPPHPVALALSHVSRYSFKRIIDTREADFVDPQPPLDLAALEQYAEGTASQLLYLQLAAAGIKDREADHAASHLGRAAGIATLLRGTAAHAASRRCYLPVDLCAEARVSQEDVYGGAVSEGLRDVVHKVASLAKGHLDEARRLAPRLPGGAAAVMLQSVATDRYLRALEGANFDPWDAALLREHAGGAAPLPYVLAVKWHQLRGT Gonium_multicoccum_NIES737 ATMAEPVRAAFAFCVQQVRQYDYLNYVWVSQASKELRPALFALRAFNIETGLVAEQVRSREAVVGQIRFQWWRDAVRAAFEGHPPAHPVAAALAHVSRYSFKRIIDAREADFVDPQPPLDLGALEQYAEATASQLLYLQLAAAGIKDREADHAASHLGRAAGIANLLRGTAAHAASRRCYLPVDLCAEARVSQEDVYGAVVSEGLRDVVHKVASLAKGHLDEARRLAQRLPPGAAALMLQSVGTDRYLTALEAANFDPWDAALLREHG-GGAPLPYVLAVKWHQLRGT Gonium_quadratum_NIES653 ATMPEPVRAAFAFCVQQVRQFDYLNYVWVSQASKDLRPALFALRAFNIETGLVAEQVRSREAVVGQIRFQWWRDAVRAAFEGHPPAHPVALALSHVSRYSFKRIIDAREGDFVDPQPPLDLGALEQYAEGTASQLLYLQLAAAGIKDREADHAASHLGRAAGIATLLRGTASHAASRRCYLPVDLCAEARVSQEDVYGGVVSEGMRDVVHKVASLAKGHLDEARRLAPRLPAGAAAVMLPTVATDRYLRALEAANFNPWDAALLREHGGEAAPLSYVLAVKWHQLRGT Pleodorina_japonica_UTEX2523 AVMPEALRSAFGYCVQQVRQYDYLNYVWVAQMSKELRPALFALRAFNIETALVADSVRSKESVVGQIRFQWWRDAVKSAFDGRPPSHPVVLALAHVSRYSFKRMIDCREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLAAAGIKHPDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVIHKVASLAKGHLDEARRLAPRLPHGAAAMMLPAVSLGRYLEALEAANFDPYDARLIREHGGGSAPVSYVLAVKWHHLRGT Volvox_tertius_NIES544 AAIPEAVKSSFGFCVQQVRQYDYLNYIWVAQMSKELRPALFALRAFNIETALVAGSVRSKESVVGQIRFQWWRDAVKAAYNGHPPSHPVALALAHVNRYCFKRIIDCREADFVDPQPPLHLHALEQYAEGTSSQLLYLQLAAAGIKHRDADHAASHLGRAAGITTLLRGTAAHAASRRCYLPVNLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAALMLPTVAVGRYLEALEAASFNPYDEKLIREHGGGSAPLSYVLAVKWHQLRRT Volvox_ovalis_NIES2569 AAIPEALKSAFGFCVQQVRQYDYLNYIWVAQMSKELRPALFALRAFNIETALVADSVRSKESVVGQIRFQWWRDAVKAAYDGHPPNHPVALALAHVNRYCFKRIIDSREADFVDPQPPLHLQALEQYAEGTSSQLLYLQLAAAGIKHHDADHAASHLGRAAGITTLLRGTAAHAASRRCYLPVDLCARSRVSQEDVYGGVVSEGLRDVVHEIASLAKGHLDEARRLAPRLPPGAEALMLPSVAVGRYLGALEAANFNPYDEKLIREHGGGSAPLSYVLAVKWHHLRRT Volvulina_compacta_FACHB2337 AAVPDTVRAALGYCVQQVRQYDYLNYVWVAQMPKDLRPALFALRAFNIETALVAENIRSREPVVGQIRFQWWRDAVKNAYDNRPPSHPVAIALATVSRYSFKRIIDSREADFLDPQPPLDLVALEQYAEGTASQLLYLQLAAAGIKDREADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPSGSAALMLPAVAVGRYLEGLEAANFDPYDARLMREHGGGSAPLSYVLAVKWHHLRWT Volvulina_compacta_NIES582 VTASDSLRAALGYCVQQVRQYDYLNYVWVAQMPKDLRPALFALRAFNIETALVAENVRSRESVVGQIRFQWWRDAVKAAYDNRPPNHPVAVALAHVSRYSFKRIIDCREADFLDPQPPLDLVALELYAEGTASQLLYLQLAAAGIKDREADHAASHLGRAAGITTLLRGTAAHAAARRSYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAALMLPAVAIGRYLEALEGVNFDPYDARLLR??????????????????????? Platydorina_caudata_NIES728 AVMPESVRAAFGYCVDQVRQYDYLNYVWVAQMPKELRPALFALRAFNVETGLVAANVRSKESVVGQIRFHWWRDAVRAAFDGRPPNHPVALALAHVSRYSFKRIIDCREADFLDSQPPLDLAALEQYAEGTASQLIYLQLSAASVKDREADHAASHLGRAVGITTLLRGTAAHAAARRSYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLMPRVPAAARGVMLPAVAVGRYLLALEAANFNPYDERLVREYSGAGAPLSYVLAVKWHQIRGT Eudorina_elegans_NIES717 AAVPEDLRPAFGFCVQQVRQYDYLNYVWVAQTSKELRPALFALRAFNIETAMVADSVRSKEAVVGQIRFQWWRDAVRAAFEGQPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTAAQLLYLQLAAAGIKHRDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGVMQPAVAVGRYLEALEAANFNPYDARLMREHG-GSAPLSYVLAVKWHHLRGT Eudorina_illinoisensis_NIES460 AAVPEDLRPAFGFCVQQVRQYDYLNYVWVAQTSKELRPALFALRAFNIETAMVADSVRSKEAVVGQIRFQWWRDAVRAAFEGQPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTAAQLLYLQLAAAGIKHRDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGVMQPAVAVGRYLEALEAANFNPYDARLMREHG-GSAPLSYVLAVKWHHLRGT Pandorina_colemaniae_FACHB2361 ???PEQIRAALGYCVQQVRQYDYLNYVWVAQMSKDLRPALFALRAFNIETALVAGTVRSKESVVGQIRFQWWRDAIKAAYDGRPPNHPVALALAHMSRYCFKRIIDAREADFLDPQPPLDLGALEHYAEGTASQLLYLQLAAAGVKDREADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEAAVSQEDVYGGVVSEGLRDVVHRVASLAKGHLDEARRLAPRLPKGAAAVMLPAVGVGRYLAALEAANFDPYDARLLREGSGGGAPLSYVLAIKWHQLMGT Pandorina_colemaniae_NIES572 AAMPEQIRAALGYCVQQVRQYDYLNYVWVAQMSKDLRPALFALRAFNIETALVADTVRSKESVVGQIRFQWWRDAIKAAYDGRPPNHPVALALAHMSRYCFKRIIDAREADFLDPQPPLDLGALEQYAEGTASQLLYLQLAAAGVKDREADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEAAVSQEDVYGGVVSEGLRDVVHRVASLAKGHLDEARRLAPRLPKGAAAVMLPAVGVGRYLAALEAANFDPYDTRLLREGGGGGVPLSYVLAIKWHQLMGT Eudorina_peripheralis_NIES725 AAMPEGLRSAFGFCVQQVRQYDYLNYVWVAQTSKELRPALFALRAFNIETALVADNVRSKEPVVGQIRFQWWRDTVKAAFEGQPPKHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTAAQLMYLQLAAAGIKHRDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVELCAEARVSQEDVYGGVVSDGLRDVVHKVASLAKGHLDEARRLAPRLPHGSARVMLPAVGVGRYLEALEAANFDPYDAKLIREHGGGSAPVSYVMAIKWHQLRGT Eudorina_unicocca_SAG24_1c AAIPEGLRSAFGFCVQQVRQYDYLNYVWVAQTPKELRPALFALRAFNIETALVADNVRSKEPVVGQIRFQWWRDTVKAAFEGHPPKHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTAAQLMYLQLTAAGIKHKDADHAASHLGRAAGISSLLRGTAAHAAARRCYLPVELCAEARVSQEDVYSGVVSDGLRDVVHKVASLAKGHLDEARRLAPRLPVGAARVMLPAVAVGRYLEALEAANFDPYNARLIREHGGGSAPVSYVMAIKWHQLRGT Volvox_obversus_NIES868 ASVPEVLRSSFGFCVQQVRQYDYLNYVWVAQMSKGLRPALFALRAFNIETALVSDSVRSKEPLVGQIRFQWWRDAVKAAFDGRPPNHPVAVALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLAAAGVKHRDADHAASHLGRAVGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYAGVISEGLRDVVHKVASLAKGHLDEARRLVPRVPPGAAGLSLPAVAVGRYLAALEAVNFNPYDAKLIQEHGAGSAPLSYVLAVKWHHLRRT Volvox_carteri_weismannia_NIES866 AAIPEALRSAFGFCVQQVRQYDYLNYVWVAQMPKDLRPALFALRAFNIETALVADSVRSKESVVGQIRFQWWRDAVKAAYESRPPNHPVAVALAHVSRYCFKRIIDCREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLGAAGVKNKDADHAASHLGRAAGITTLLRGTAAHATARRCYLPVDLCTEARVSQEDVYSGVVSEGLRDVVHKVASLAKGHLDEARRLARRLPPGAAAVMLPAVAVGRYLEALEAVNFNPYETKLIREHGGGSAPLSYVLAVKWHQLRGT Volvox_carteri_nagariensis_HK10 ASLPEDLRSAFGFCVQQVRQYDYLNYVWVAQMPKDLRPSLFALRAFNIETALVADSVRSKESVVGQIRFQWWRDAVKAAFENRPPNHPVAVALAHVSRYCFKRIIDCREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLAAAGVKHQDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYSGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGVMLPAVAVGRYLEGLEAVNFNPYETKLIREHGGGSAPLMYVLAVKWHQLRGT Volvox_carteri_kawasakiensis_NIES732 AAIPEALRSAFGFCVQQVRQYDYLNYVWVAQMPKDLRPALFALRAFNIETALVADSVRSKEPVVGQIRFQWWQDAVKAAFENRPPNHPVAVALSHVSRYCFKRIIDCREADFLDPQPPLDLQALEQYAEGTSSQLMYLQLAAAGVKHKDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYSGVVSEGLRDVVHRVASLAKGHLDEARRLAPRLPPGAAGVMLPAVAVGRYLEALEAVNFNPYETKLIREHGGGSAPLSYVLAVKWHQLRGT Basichlamys_sacculifera_NIES566 AAMPENVRAAFGYCVQQVRQYDYPNYVWVAQMPKDLRASLFALRAFNIETALVGGQIRSREAVVGQIRFQWWRDAVRAAFEGAPPNHPVVLALAHTSRYSFKRIIDCREADFLDTQPPLELAALEQYAEGTAAQLMYLQLSAAGVKDKDADHAASHLGRAVGITTLLRGTAAHAAARRCYLPMDLCAEARVSQEDVYGGVVSDGLRDVVHKVASLAKGHLDEARRLAPRLPPAAASVLLPGVAAGRYLAALEAANFDPFHPSLLRGHSGGQAPLAYVLALKWHQLRGT Tetrabaena_socialis_N571 ??????????????????????????????????ELRPALFAVRAFNIETALVAGQIRSREAVVGQIRFQWWRDAVRDAFEGRPPNHPVVLALAHTSRYAFKRIIDCREADFLDPQPPLELSALEQYAEGTAAQLMYLQLSAVDVKNKDADHAASHLGRAVGITTLLRGTAAHAAARRSYLPLDLCAEARVSQEDVYGGVVSDGLRDVVHK????????????????????????????????????????????????????????????????????????????? Volvulina_steinii_SAG90_1 AAIPDNVRAAFGYCVQQVRQYDYLNCVWVAQMDKDLRPALFALRAFNIETALVADQVRSRESLVGQIRFQWWRDAVKGAYDGRSPNHPVALALAHVSRYCFKRLIDTREADFLDPQPPLHLAALEQYAEGTASQLMYLQLAAAGIKDREADHAASHLGRAAGITTLLRGTAAHAASRRSYLPVDLCAEARVSQEDIYSGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAAVMLPAVGVGRYLEGLEAANFNPYDPALLREHGG??????????????????? Volvox_barberi_NIES730 VAEPNRTKAAFGYCVQEVRQYDYLNYVWVAQASKDLRPALFALRAFNIETGLVAENVKSKESVVGQMRFQWWRDAIKAAYDNRPPNHPVALALAHVSRYCFKRIIDSREADFLDPQPPLDLAALETYAEGTASQLMYLQLAAAGIKNPDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYKGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAAVMLPAVAVGRYLEALEGVNFNPYDPALAREHSGGGAPLGYVLAVKWLQLRGS Pleodorina_indica_NIES736 AAIPEALRPAFGFCVQQVRQYDYLNYVWVAQTPTDLRPALFALRAFNIETALVADNVRSKEAVVGQIRFQWWRDAVKAAFEGRPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTASQLMYLQLAAAGIKHRDADHAASHLGRAVGITTLLRGTAAHASARRCYLPVDLCAEARVSQEDVYSGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPRGTASVMLPAVAVGRYLEALEAANFDPYDAKLIREHGGGSAPLSYVLAVKWHQLRGT Pleodorina_starrii_NIES1362 AAIPEALRPAFGFCVQQVRQYDYLNYVWVAQSPTDVRPALFALRAFNIETALVADNVRSREAVVGQIRFQWWRDAVRAAFEGRPPNHPVALALAHVSRYSFKRIIDCREADFVDPQPPLDLQALEQYAEGTASQLMYLQLAAAGIKHRDADHAASHLGRSVGLTTLLRGTAAHASARRCYLPVDLCTEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPRGAASVMLPAVAVGRYLEALEAANFDPYDAKLIREHGGGSAPLSYVLAVKWHQLRGT Pleodorina_starrii_NIES1363 AAIPEALRPAFGFCVQQVRQYDYLNYVWVAQSPTDVRPALFALRAFNIETALVADNVRSREAVVGQIRFQWWRDAVRAAFEGRPPNHPVALALAHVSRYSFKRIIDCREADFVDPQPPLDLQALEQYAEGTASQLMYLQLAAAGIKHRDADHAASHLGRSVGLTTLLRGTAAHASARRCYLPVDLCTEARVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPRGAASVMLPAVAVGRYLEALEAANFDPYDAKLIREHGGGSAPLSYVLAVKWHQLRGT Volvox_gigas_NIES867 AAVPESLKSAFGFCVQQVRQYDYLNYVWVAQAPKELRPALFALRAFNVETALIADNVRSKEAVVGQIRFQWWRDVIKAAFEGRPPNHPVALALAHMSRYSFKRIVDCREADFLDPQPPLDLQALEQYAEGTASQLMYLQLAAAGVKHRDADHAASHLGRAAGITTLLRGTAAHAAARRCYLPVDLCAEARVSQEDVYGGVVSEGLRDVVHKAASLAKGHLDEARRLAPRLPRGAAAVMLPSVGVGRYLEALEAANFDPYDAKLVREHGGGSAPLPYVLAVKWHQLRGT Eudorina_elegans_NIES568 AAIPESLRPAFGFCVQQVRQYDYLNYVWVSQAPKDLRPALFALRAFNVETALVADNVRSKEAVVGQIRFQWWRDAVKAAFEGRPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTASQLMYLQLSAAGIKHRDADHAASHLGRAAGLTTLLRGTPAHAAARRSYLPVDLCAEALVSQEDVYSGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGVMLPAVGAGRYLEALEAANFDPFDGRLAREHGGGSAPLSYVLAIKWHQLRGT Eudorina_elegans_FACHB2321 AAIPDALKPAFGFCVQQVRQYDYLNYVWVSQAPKELRPALFALRAFNVETGLVADTVRSKEAVVGQIRFQWWRDAVKAAFEGRPPNHPVALALSHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTASQLMYMQLSAAGIKHRDADHAASHLGRAAGITTLLRGTAAHAAARRSYLPFDLCAEAHVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPGAAGVMLPAVGVGRYLEALEAANFDPFDGRLAREHGGGSAPLSYVLALKWHQLRGT Eudorina_elegans_NIES458 AAIPDALKPAFGFCVQQVRQYDYLNYVWLSQARKDLRPALFALRAFNVETGLVADNVRSKEAVVGQIRFQWWRDAVKAAFEGRPPNHPVALALAHVSRYSFKRIIDCREADFLDPQPPLDLQALEQYAEGTASQLMYLQLSAAGIKHRDADHAASHLGRAAGLTTLLRGTPAHAAARRSYLPVDLCAEAHVSQEDVYGGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPPMAADVMLPAVAVGRYLEALEAANFDPFDGRLAREHGGGSAPLPYVLAVKWHQLRGT Chlamydomonas_schloesseri_SAG2486 ASMPDTVRSAFGFCVQQVRQYDYPNYVWVAQMDKDLRPALFAL-------------------------------AVRAAYEDRPPNHPVAIALAHVSRYSFKRIIDVRESDFLDPQPPLDLGALETYAEGTASQLLYLQLAAAGVKHRDADHAASHLGRAVGITTLLRGTAAHAAARRSYLPVDLCAEARVSQEDVYSGAVSEGLRDVVHKVASLAKGHLDEARRLAPRLPAGAAGLMLPAVAVDRYLQALEAVNFDPYDSGLLKQHGGGAAPLSYVLAVKWHQLRG- Chlamydomonas_reinhardtii_CC503 ASMPDTVRSALGFCVQQVRQYDYPNYVWVAQMDKDLRPALFALRAFNIETALVADQVRSKESVVGQIRFQWWRDAVRAAYEDRPPNHPVAIALAHVSRYSFKRIIDVRESDFLDPQPPLDMGALESYAEGTASQLLYLQLAAAGIKHRDADHAASHLGRAVGITTLLRGMPVHAAARRSYLPVDLCAEARVSQEDVYSGVVSEGLRDVAHKVASLAKGHLDEARRLAPRLPPGAAGLMLPAVAVDRYLKALEAANFDPFDAGLLKQHGGGAAPLSYVLAVKWHQLRGT Chlamydomonas_globosa_SAG81_72 ASMPDTVRSAFGFCVQQVRQYDYPNYVWVAQMDKEL----------------------SRESVVGQIRFQWWRDAVRAAYEDRPPNHPVAIALAHVSRYSFKRIIDVRESDFLDPQPPLDMGALESYAEGTASQLLYLQLAAAGIKHRDADHAASHLGRAIGITTLLRGTAAHAAARRSYLPVDLCAEARVSQEDVYSGVVSEGLRDVAHKVASLAKGHLDEARRLAPRLPPGAAGLMLPAVAVERYLQALEAVNFDPFDAGLLKQHGGGAAPLSYVLAIKWHQMRGT Volvulina_pringsheimii_NIES895 SALPENVRAAFGYCVQQVRRYDYLNYVWVAQMSKDLRPALFALRAFNIETGLVAESVRSRESVVGQIRFQWWRDAVRAAYDNRPPNHPVAVALAHASRYSFKRIIDSREGDFLDPQPPLDLMALEQYAEGTASQLQYLQLAAGGIKDREADHAASHLGRAAGITTLLRGTAAHAAARRSYLPVDLCAAARVSQEDVYSGVVSEGLRDVVHKVASLAKGHLDEARRLAPRLPRGAAGLMLPAVAVGRYLGGLEAANFNPFDARLMREHGGGAAPLSYVLAVKWHH???? Vitreochlamys_ordinata_NIES882 TGVPDGLRHAFGYCVQQVRQYDYLNYVWLAQMPKELRPALFVLRAFNVETAMVAGLVRSKEAVVGQLRFQWWRDAVRAAYDNRPPNHPVALALAHVSRYCFKRIIDAREADFLDPQPPLDMAALEAYAEGTAAQLQYLQLSAARVKDSAADHAASHLGRALGISTLLKGTAAHAAARRCYLPVELCAEARVSQEDVYGGVVTDGLRDVVHRVASVAKGHLDEARRLGPRVPEAGRRVMLAGVEAGRYLEALEAANFDPFDARLLREHGGGRAPLGYVLAVKWHQLRGT Volvulina_boldii_NIES893 ???????????????????????????????????????????????????????????????VGQIRFQWWRDAVRAAYDGRPPNHPVAIALAHV???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Eudorina_cylindrica_FACHB2322 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_globator_SAG_199_80 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_dissipatrix_NIES4128 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_powersii_NIES4127 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_carteri_nagariensis_NIES865 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Eudorina_cylindrica_NIES722 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Colemanosphaera_charkowiensis_NIES3383 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Colemanosphaera_charkowiensis_FACHB2326 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_kirkiorum_NIES_543 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Volvox_ferrisii_NIES3986 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? ; END; begin trees; tree tree_2888 = [&R] (Chlorella_variabilis_NC64A:1.132144,Chlamydomonas_moewusii_SAG11_16f:0.362024,(Vitreochlamys_nekrassovii_SAG11_10:0.277206,(((((((((((((Eudorina_elegans_NIES720:0.034952,Eudorina_elegans_NIES719:0.046945):0.045877,(Eudorina_minodii_NIES856:0.052473,Eudorina_elegans_NIES456:0.054123):0.028049):0.060015,(Volvox_tertius_NIES544:0.035515,Volvox_ovalis_NIES2569:0.041115):0.054711):0.009207,(Volvox_africanus_NIES863:0.094849,(Volvox_obversus_NIES868:0.096343,(Volvox_carteri_weismannia_NIES866:0.032397,(Volvox_carteri_nagariensis_HK10:0.029769,Volvox_carteri_kawasakiensis_NIES732:0.016329):3.0E-6):0.024664):0.01097):0.007665):0.018082,Pleodorina_japonica_UTEX2523:0.071141):0.002013,Volvox_aureus_NIES541:0.09992):0.008707,(((Eudorina_elegans_NIES717:3.0E-6,Eudorina_illinoisensis_NIES460:3.0E-6):0.046116,(Eudorina_peripheralis_NIES725:0.022361,Eudorina_unicocca_SAG24_1c:0.034639):0.049549):0.01034,((Pleodorina_indica_NIES736:0.007924,(Pleodorina_starrii_NIES1362:3.0E-6,Pleodorina_starrii_NIES1363:3.0E-6):0.032957):0.029219,(Volvox_gigas_NIES867:0.066685,((Eudorina_elegans_NIES568:0.030279,Eudorina_elegans_NIES458:0.0293):0.012007,Eudorina_elegans_FACHB2321:0.02482):0.036751):0.018952):3.0E-6):0.016154):0.031337,(Astrephomene_gubernaculifera_NIES418:0.101538,Astrephomene_perforata_NIES564:0.062703):0.052401):0.015634,(((Yamagishiella_unicocca_FACHB2364:0.108504,Volvox_barberi_NIES730:0.116973):0.031658,((Gonium_Pectorale_NIES2863:0.089658,Gonium_octonarium_NIES851:0.060479):0.005906,((Gonium_viridistellatum_NIES654:0.063956,Gonium_quadratum_NIES653:0.034791):0.016717,Gonium_multicoccum_NIES737:0.047933):0.024382):0.091501):0.009537,(Pandorina_colemaniae_FACHB2361:0.013189,Pandorina_colemaniae_NIES572:0.007923):0.076281):0.014327):0.00212,((((Chlamydomonas_debaryana_SAG70_81:0.14721,(Chlamydomonas_schloesseri_SAG2486:0.029118,(Chlamydomonas_reinhardtii_CC503:0.023191,Chlamydomonas_globosa_SAG81_72:0.026642):0.007876):0.059603):0.020789,Volvulina_boldii_NIES893:2.0E-6):0.027269,((Vitreochlamys_aulata_NIES878:3.0E-6,Vitreochlamys_aulata_SAG80_81:0.004175):0.170906,Volvulina_steinii_SAG90_1:0.078459):0.024308):0.011577,((Chlamydomonas_debaryana_SAG11_55a:0.236228,(Pandorina_morum_NIES890:0.004033,Pandorina_morum_FACHB2362:3.0E-6):0.068227):0.012391,((Volvulina_compacta_FACHB2337:0.050414,Volvulina_pringsheimii_NIES895:0.092625):0.015744,Volvulina_compacta_NIES582:0.051411):0.027734):0.012961):0.013492):0.04103,Platydorina_caudata_NIES728:0.096157):0.038745,Vitreochlamys_ordinata_NIES882:0.201842):0.01413,(Basichlamys_sacculifera_NIES566:0.049934,Tetrabaena_socialis_N571:0.073014):0.069377):0.114152):0.316557); end;