#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=65; TAXLABELS 'Claviceps purpurea 20_1' Epichloe_amarillans_E4668 Epichloe_aotearoae_e899 'Epichloe australiensis AL1759f_allele_1' 'Epichloe australiensis AL1759p_allele_2' Epichloe_baconii_9707 Epichloe_brachyelytri_E4804 'Epichloe bromicola AL0426_2_E7561' 'Epichloe cabralii BlaTG2_allele_1' 'Epichloe cabralii BlaTG2_allele_2' 'Epichloe canadensis CWR34_allele_1' 'Epichloe canadensis CWR34_allele_2' 'Epichloe chisosa 134_allele_1' 'Epichloe chisosa 134_allele_2' 'Epichloe chisosa 134_allele_3' 'Epichloe coenophiala Greek_type1_allele_1' 'Epichloe coenophiala Greek_type1_allele_2' 'Epichloe coenophiala Greek_type1_allele_3' 'Epichloe coenophiala e19_allele_1' 'Epichloe coenophiala e19_allele_2' 'Epichloe coenophiala e19_allele_3' 'Epichloe danica D2_5_allele_1' 'Epichloe danica D2_5_allele_2' 'Epichloe disjuncta A1_1_allele_1' 'Epichloe disjuncta A1_1_allele_2' 'Epichloe disjuncta A4_5_allele_1' 'Epichloe disjuncta A4_5_allele_2' 'Epichloe disjuncta C5a_1_allele_1' 'Epichloe disjuncta C5a_1_allele_2' 'Epichloe elymi ATCC_201553' 'Epichloe festucae Fl1_E894' Epichloe_festucae_lolii_15335 Epichloe_gansuensis_E7080 Epichloe_glyceriae_E277 'Epichloe guerinii CBS113029_allele_1' 'Epichloe guerinii CBS113029_allele_2' 'Epichloe hordelymi A51_5_allele_1' 'Epichloe hordelymi A51_5_allele_2' Epichloe_inebrians_e7478 'Epichloe melicicola 822_allele_1' 'Epichloe melicicola 822_allele_2' Epichloe_mollis_AL9924 'Epichloe novae-zelandiae AL0725_2_allele_1' 'Epichloe novae-zelandiae AL0725_2_allele_2' 'Epichloe novae-zelandiae AL0725_2_allele_3' 'Epichloe schardlii PA_10_10_allele_1' 'Epichloe schardlii PA_10_10_allele_2' Epichloe_scottii_DSM112488 Epichloe_scottii_DSM111774 Epichloe_scottii_DSM111775 'Epichloe sibirica MTI_I03' 'Epichloe siegelii ATCC74483_e915_allele_1' 'Epichloe siegelii ATCC74483_e915_allele_2' Epichloe_stromatolonga_Chsa102 'Epichloe sylvatica GR_10156_E7368' 'Epichloe sylvatica pollinensis A2_6' 'Epichloe tembladerae ni_269648_allele_1' 'Epichloe tembladerae ni_269648_allele_2' Epichloe_typhina_9340 Epichloe_typhina_E8 'Epichloe typhina poae BlaTG_1' Epichloe_typhina_aonikenkana_2642 Epichloe_uncinata_E81 'Epichloe sinensis 57A_allele_1' 'Epichloe sinensis 57A_allele_2' ; END; BEGIN CHARACTERS; TITLE Epichloe_spp._tefA_tub; DIMENSIONS NCHAR=1716; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Claviceps purpurea 20_1' CATCAACGTGGTCGTTATCGTATGTCTACA-ATGAATTCTACCCTC-------------AAGTACGACTGCTAACTTGATTTACTTCTAGGGGTATGT-TTGCGGACTT-CCACTCTTCGTCAGAAATTTCAAAATATTGACTTTAGCTTAGCCACGTCGATTCGGGCAAGTCGACCACCACCGGTCACTTGATCTACCAGTGTGGTGGTATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGAGCTTTTTTATT-CTTGTTCACGTCGATTTCAGAGATTGCTTGCGCGGTCACCAAAGTGTGA--------ATTTGATT--------------CTACCTT--AGCGGGCATGCAA--------TGT---------------GCCCCTCTTTGAGGCAG-GACTCGAA-----------AAAAATTCTTC-----------------AGCCGTGGGGCTCACCCTCTCATGTCTGACTCGCCGAGGCGGGGTGT--CTCCACCTACCCC--AATCC--GTCCGGCGAGCATGGAATTG-CGCTGCGACA-----TCTATCAATGAGCATGGCTGCGC-----------------AGAAGATGAAAGTCCACACACATAC-GACATTGTCGCTGACCTG-TTTTAAACTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACATGGTCACTGTCATTGGTAAG--TTGATCGATG-CACGATT----GAATAATTGGAATTG--GCATTAACTTTCTCCACACAGATGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTCAATCCCGTCGTCGCTTTGTTTACCTTCCGGGCCCCTCAGCCCTCGACGC--------GTTGAG--CCCCTGATTTGAGACCCCGCCGAGCAAATGCCACCACGTCCTGCGC-------GCCCGACGAAC-CGCAATGGC-ACAGGCAAATCGAGAT-----CAAATCAGTTGTAGTGAAGATTGCCTCACTGGCTGTCACGTTTCACTCTAT-TCG----TTGCTAA-TGCTCCC----------TCTCCAATAGGTTCACCTTCAGACCGGTCAGTGCGTAAGTAACGACTCTCATCGACATCGAAT---------GCTTGGAAA--CGACG-GAAGACTTATGCAATTCCTCTCGACAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAGTGGTGTGTACAATGGTACCTCGGAGCAACAGCTCGAGCGCATGAGCGTCTACTTCAATGAGGTGTGTAAATTGATAAAGC----AAATCTCTACCAATATGCAATCCCTCGCTGCATGCCGTCTGGAGAATGTCCCACAATGAGATGT--------GAGCAA-CCTGGGTC-----ATGCTAAACTGTGCGATAGGCCTCTGGCAACAAGTACGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTTCGTGCTGGTCCTTTCGGCCAGCTTTTCCGCCCCGACAACTTCGTTTTTGGACAGTCTGGTGCCGGAAACAACTGGGCCAAGGGTCACTACACTGAAG Epichloe_amarillans_E4668 CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-TTTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAATATATTCTACTCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTTGCCCGCCCACCAAAGCCCCTCTTTTGCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCACCC------------------AAAAAAAA--------TTG-TGAT-TAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACG-CATTAGACTC-TTCTAACCCGATCTGCATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAACGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--GTTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAACA--ACATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AGAGAA-AAAGTGTCATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_aotearoae_e899 CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAATAGGGGTACGTACTGCAAAGTA-TCACTCGTCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATTCCTCTTTCACTCCACGCAT--------AATATGTGACGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACTTCTCAACCCGTCAC-TGGTCT--GAGCTAGAGACGCAAACG---AGAGACATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTGTTGAT-GAC-AAATCACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-TATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------TAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGACCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGACACAAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGCCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCTGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe australiensis AL1759f_allele_1' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------AATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATGA-----CATGAC-ATTCGCGTGGCCCACCTCT------CCCCCCCCCCTAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCAACA-CATTAGACTC-CATCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAG??????????????????????????????????AAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTCCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTTGGTCAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? 'Epichloe australiensis AL1759p_allele_2' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAT------TTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGAAATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAG??????????????????????????????????GAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGACAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? Epichloe_baconii_9707 CATTAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTTGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT--------------TGCCCCTCTTTTCGCCCGCGATACGAA--------TTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTTGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCCCCC------------------AAAAAAAA--------TTG-CGAT-AAA-AAATCACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-TACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAAACTCCCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCACCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAA-T-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCTTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCGTTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAAAGAACG--------AAAGAA-AAAGTGCTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTGGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_brachyelytri_E4804 CATCAACGTGGTCGTTATCGTAAGTCGACT-TTGACCTGTATCATTCGATGTATTGG---AAAACAGTTGCTAACTTG-TCTTCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--AGTGGGCAAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCACTTGGTCT--GAGCTAGAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGACCTCCC------------------AAAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGAACCCCGCCGAGT----GCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTCATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGGAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe bromicola AL0426_2_E7561' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTCGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA--------ATTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGGCATGA-----CATGAC-ATTCGCGTGCCCTCCC-----------------AAAAAAAAA--------TTG-TGAT-GAT-GAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACTTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-AAAAAAAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACA--TTTTACT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAACG----------ATAA-AAAGTGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe cabralii BlaTG2_allele_1' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTTAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????TT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe cabralii BlaTG2_allele_2' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-ACTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACC----CCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------ACCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAA----CGACTT--------------GCCCCTCTTTTTCGCCCGCGATACGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCCCCC------------------AAAAATTT--------TTT-TGAT-AAA-AAACCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGATG-CATTAGACTC-TTCTAACCCGATCTGTATCATTAACGTGCATCTATTAG??????????????????????????????????????????????????????????????????TT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACGGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGGAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe canadensis CWR34_allele_1' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-TTTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAATATATTCTACTCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTTGCCCGCCCACCAAAGCCCCTCTTTTTCGCCCGCGATACGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGGGCTAGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCCCCC------------------AAAAAAAA--------TTG-TGAT-TAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGATG-CATTAGACTC-TTCTTACCCGATCTGCATCATTAACGTGCATCTATTAG??????????????????????????????????????????????????????????????????TT-------TAACCGCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAATGATTGCGGTA---------------------TTCGAGAACTGTTAG----CTGACC--TTTTTCT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTAGAAC----GACGGGCACAAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTCATCATATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe canadensis CWR34_allele_2' CATCAACGTGGTCGTTATCGTAAGTTTACT-TTGACCTGTATCATTCGATGTATCGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTGACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCTACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGACATGA-----CATGGG-ATTCGCGTGGCCTCCC------------------AAAAAAAA--------CTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CACTAGACTCTTATCAACCCGATCTGTATCATTAACGTGCATCTTTTAG??????????????????????????????????????????????????????????????????TT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAACGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AGAGAA-AAAGTGTCATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe chisosa 134_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTCGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA----------TATTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGGCATGA-----CATGAC-ATTCGCGTGCCCTCCC------------------AAAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAG???????????????????????????????????????????????????????????????????????????????TTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-AAAAAAAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACA--TTTTACT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATTAGACGGAAAGAGAACG----------ATGA-AAAGTGTTAAC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe chisosa 134_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-TTTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAATATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCTTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGTAAG----CGACTTGCCCGCCCACCAAAGCCCCTCTTTTTCGCCCGCGATACGAA----------ATTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCCCCC------------------AAAAAAAA--------TTG-TGAT-TAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCTCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGATG-CACTAGACTC-T?TCAACCCGATCTGCATCAATAACGTGCATCTATTAG???????????????????????????????????????????????????????????????????????????????CTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATTAACGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAACGACAGACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AGAGAA-AAAGTGTCATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe chisosa 134_allele_3' ???????????????????GTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAG----TTTTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGAAATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG???????????????????????????????????????????????????????????????????????????????CTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAG-ACTG-TAG----CTGACCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe coenophiala Greek_type1_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTCTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA------TATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTAAC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGATCTGTATCATTAACGCGCATCTATTAG???????????????????????????????????????????????????????????????GAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe coenophiala Greek_type1_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------GATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATGA-----CATGAC-ATTCGCGTGGCCCACCTCTC-----CCCCCCCCCCCAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CACCAACCCGATCTGTATCATTAACGTGCATCTATTAG???????????????????????????????????????????????????????????????AAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe coenophiala Greek_type1_allele_3' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATTACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGGAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT--------------TGCCCCTCTTTTCGCCCGCGATACGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTCTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACAAG-AGAGACATGA-----CATGAC-ATTCGCGGGGCCCCCC----------------CAAAAAAAAA--------TTG-TGAT-AAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACTGTCATTGGTAAGCCTTGGTCGACA-CGTTAGACTC-TACCAACCCGATCTGTATCATTAACGTGCATCTATTAG???????????????????????????????????????????????????????????????AAGTT-------CAAACTCTCTGTCTGTCTTGGAACCTCTCT---CCTCGACGCGTTCCGGTGTTGAGCCCCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAA-T-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATGAAAAAACTCAC---ATTCATTTGAGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCGTTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe coenophiala e19_allele_1' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------TATTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTAAC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe coenophiala e19_allele_2' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATTACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGGAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT--------------TGCCCCTCTTTTCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTCTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACAAG-AGAGACATGA-----CATGAC-ATTCGCGGGGCCCCCC----------------CAAAAAAAAA--------TTG-TGAT-AAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACTGTCATTGGTAAGCCTTGGTCGACA-CGTTAGACTC-TACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAAACTCTCTGTCTGTCTTGGAACCTCTCT---CCTCGACGCGTTCCGGTGTTGAGCCCCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAA-T-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATGAAAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCGTTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe coenophiala e19_allele_3' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------GATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATGA-----CATGAC-ATTCGCGTGGCCCACCTCT------CCCCCCCCCCCAACAAA--------TTG-TGATAAAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe danica D2_5_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTCGCTAACTTA-ACTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAAC---TTTTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGTCATGA-----CATGAC-ATTCGCGTGCCCTCCC-----------------AAAAAAAAA--------CTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTCCT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAACAACACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGCAGATGAGACGGAAAGAGAACG----------ATAA-AAAGTGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCCGAC????????????????????????????????????????????????????????????? 'Epichloe danica D2_5_allele_2' ???????????????????GTAAGTTGACT-TTGCCCTGTATCGCTCGATGTATCGG---ATAACAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACATACTGACTGAAGCGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA---------TTTTCTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAACAAGTCATGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTCATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta A1_1_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA-----------ATTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAT-ATTCGCGTGGCCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta A1_1_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGCGACGTTCAGTCGTTGCAATGTGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGA--C-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAWGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGGAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTGTGTGACAGGCCTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta A4_5_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA-----------ATTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAT-ATTCGCGTGGCCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATCAACGTGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta A4_5_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGCGACGTTCAGTCGTTGCAATGTGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGA--C-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta C5a_1_allele_1' ???????????????????GTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA-----------ATTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAT-ATTCGCGTGGCCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGAC????????????????????????????????????????????????????????????? 'Epichloe disjuncta C5a_1_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGSCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCCRGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTAYCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGCGACGTTCAGTCGTTGCAATGTGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACYGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGA--C-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACTCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGGAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTGTGTGACAGGCCTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? 'Epichloe elymi ATCC_201553' CATCAACGTGGTCGTTATCGTAAGTTTACT-TTGACCTGTATCATTCGATGTATCGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTGACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA-----TTTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCTACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGACATGA-----CATGGG-ATTCGCGTGGCCTCCC------------------AAAAAAAA--------CTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CACTAGACTCTTATCAACCCGATCTGTATCATTAACGTGCATCTTTTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------TAACCGCTCTGTTTGTCTTGGGGACACCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGACAAGTCGTGATGAGAGGCGGACCGAGAC---AAAAAATTAATGATTGCGGTA---------------------TTCGAGAACTGTTAG----CTGACC--TTTTTCT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTAGAAC----GACGGGCACAAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTCATCATATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTAC?????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe festucae Fl1_E894' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------AATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATGA-----CATGAC-ATTCGCGTGGCCCACCTCTCC---CCCCCCCCCCCCAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_festucae_lolii_15335 CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------AATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA--------ATTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATG-------------ATTCGCGTGGCCCACCTCTC----CCCCCACCCCCCAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_gansuensis_E7080 CATCAACGTGGTCGTCATCGTAAGTTGACTCTTGACCTGTATCATTCGATGTATTGGATAATGAAAGTTGCTAACTTG-TATGTTCACAGGGGTACGTGCTGCAAAAAATTCACTCGCCGTTGCCGAAATCCACATACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTTC---ACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCCATGCGA-CTT--GGTGGGCAAACAA--------CT----------------GCCCCTCTTTTCGCCCGCTATTCGAA-----------TTTTTTTTT-------------------GGGGGGGCGACTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCCTCCC-CGGTCT--GGGCTAGAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTTGCGTGGCCCTCC---------AAAAAAAAAAAAAAAAAAGT---------AGAT-GAC-GAATCACTGACTTGCCTTCGCTCTCTAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGGCA-CATTATACTCTTATCAACCCGATCTTTATCATTAACATGCATTTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------TGACCTCTCTGTTTGTCTTGGGGACCCCCT---CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCCGCCGGGC----CCGGCCACGACGTACACGCCCGCGGCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGATCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--ACATG--AAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--TTTCATAATC--AAAAAGTCTCCATTGAGC-------------TGCATACCGCTCTGGAGATAAGACGGAAAGAGAACGAAAAAAAAAAAGAAGAAGGTTTTTTC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTTCGTCTTTGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_glyceriae_E277 CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATACCAGTTGCTAACTTG-TCTGCTAACAGGGGTGCGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTTGAGAAGGTAAGATACTCTTCTTTCACGTCGCGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAGCAAGCAACT----------------GCCCCTCTTTTCGCCCGCGATTCGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGTTAT--GAGCTAGAGACGCAAACGAG-AGAGACATGACATGGCATGAC-ATTCGCGTGGCCTCCC-----------------AAAAAAAAA--------CTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGCTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTTTGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CATCAACCCGATCTGTATCATTAACGTACATATACTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCC------CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGATCGAGAC-----AAAATTAAAGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCTTCCCCTCTTCTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAGC----GACAGGCACCAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TATATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTCATA--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGCCCTGACAACTTCGTTTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe guerinii CBS113029_allele_1' ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT--CCCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACCT-TTTTTCT----------TTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--CTTCATAATCTAAAAAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGGAAAAGAAGC--------GAAGAA-AAAGTATTATC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe guerinii CBS113029_allele_2' ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AAGTT-------TGACCTCTCTGTTTGTCTCGGGGACCCCCT---CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCCGCCGGGC----CCGACCACGACGTACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGATCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--ACATG--AAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--TTTCATAATCA-AAAAAGTCTCCATTGAGC-------------TGCATACCGCTCTGGAGATGAGACGGAAAGAGAACGAAAGATAAAAAGAA-AAAATGTTAAC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe hordelymi A51_5_allele_1' ???????????????????GTAAGTTGACT-TT-ACCTGTAACATTCGATGTATTGG---ATAACAGTCGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACTACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTTTTCTTT-ACTTCACGCAT--------AATATGTGATCTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------ATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACG---AGAGGCACGA-----CATGAC-ATTCGCGTGCCCTCCC------------------AAAAAAAAAAAAT---TTG-TGAT-GACAAAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAG??????????????????????????????????????????????????????????????????????????????CTTCTGTGTTTGTATTGGGGATCCCCT---CCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTCCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC--AAAAAAATCAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACA--TTTTACT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGT---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAACG----------ATAA-AAAGTGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCCGAC????????????????????????????????????????????????????????????? 'Epichloe hordelymi A51_5_allele_2' ???????????????????GTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAACAGCTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGAAAAGCGTGTCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTCAAGGTGGGCAAGCAAGC--GCGACT----------------GCCCCTCTTTTCGCCCGCGATACGAT----------TTTTTTTTTCTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTGGATTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAGGT--CTTCATAATCTAAAAAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGGCGGGAAAAGATGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? Epichloe_inebrians_e7478 CATCAACGTGGTCGTCATCGTAAGTTGACTCTTGACCTGTATCATTCGATCCATTGGATAATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCAAAAAT-TCACTCGCCGTTGCCGAAATCCACATACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTATTTT---ACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCC------------CGCTATGCGACCTT--GGTGGGCAAACAA--------CT----------------GCCCCTCTTTTCGGCCGCCATTTGAT-----------TTTTTTTTTTTTTTTGGGGGGGGGGGGGGCTCTCGGGGCTCA---------GTCTGACTTTT---GGT-GGGCAC--CTCAACCCCTCAC-TGGTCT--GGGCTAGAGACGCAAACGAG-AGAGACGTGA-----CAGGAC-ATTCGCGTGGCCTTCC---------------AAAAAAAAAAA--------TTG-TGAT-GAC-GAATCACTGACTTGCCTTCGCTCTCTAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGGCA-CATTATACTCTTATCAACCCGATCTGTATCATTAACATGCATTTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------TGACCTCTCTGTTTGTCTTGGGGACCCCCT---CATCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCCGCCGGGC----CCGGCCACGACGTACACGCCCGCGGCCCAATGGAC-AATCGTGATGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTAT--------------------TTCGAGAACTG-TAG----CTGATCC-ATTTTCT----------TTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCAGAAACA--ACATG--AAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--TTTCATAATCA-AAAAAGTCTCCATTGAGC-------------TGCATACCGCTCTGGAGATGAGACGGAAAGAG-----AAACGAAAAAAAA-AAAGTGTTGTC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe melicicola 822_allele_1' ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTYGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGGCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe melicicola 822_allele_2' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAATAGGGGTACGTACTGCAAAGTA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATTCCTCTTTCACTCCACGCAT--------AATATGTGACGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACTTCTCAACCCGTCAC-TGGTCT--GAGCTAGAGACGCAAACG---AGAGACATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TCGTTGAT-GAC-AAATCACTGACTTGCCTTCGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-TATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGAC????????????????????CTCTCTGTTTGTCTTGGGG-CCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGACCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGACACAAATA--ACATG-AAAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGCCATC--ATGCTAATCTATGTGACAGGCTTCT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Epichloe_mollis_AL9924 CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-TATGCTAACAGGGGTACGTACTGCGGAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTATCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA-----------ATTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACGGG-AGAGACATGA-----CATGAC-TTGCGCGTGGCCCCCC-------------------AAAAAAA--------TTG-TGAT-AAA-CAATCACTGACTTGCCTCCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTG-TACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG-CCCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATCAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCTTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAAAA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAAGGTCACTACACTGAGG 'Epichloe novae-zelandiae AL0725_2_allele_1' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAT-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TAGTCT--GTGCTAGAGACGCAAACG---AGAGATACAA-----CATAAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCACCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAGCTGACTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe novae-zelandiae AL0725_2_allele_2' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTCGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGGCATGA-----CATGAC-ATTCGCGTGCCCTCCC----------------AAAAAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCAACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACTTCTCTGTTTGTCTCGGGGACCCCCT---GCTCGACGCGTTCCAGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC--AAAAAAATCAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACA--TTTTACT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATAACACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAACG----------ATAA-AAAGTGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGC????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe novae-zelandiae AL0725_2_allele_3' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTCCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTTGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTACCCC--TCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTTGCCCGCCCACCAATGCCCCTCTTTTTCGCCCGCGATACGAA--------TTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAACGAG-AGAGACATGA-----CATGAC-ATTCGCGTGGCCCCCC-------------------AAAAAAA--------TTG-TGAT-TAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGATG-CATTAGACTC-TTCTAACCCGATCTGCATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGGGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAGC----GACAGGCACAAACG--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTTGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AGAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTC????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe schardlii PA_10_10_allele_1' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA---------TTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTTAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTTCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCG?????????????????TCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGT?????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe schardlii PA_10_10_allele_2' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAG-------TTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGAAATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGCACTTCCCAGGCTGACTGCG?????????????????TCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGT?????????????????????????????????????????????????????????????????????????????????????????????? Epichloe_scottii_DSM112488 CATTAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAC-ATTCGCGTGGCCTCCC-----------------AAAAAAAAA--------AAG-TGAT-GAC-AAATCACTGACTTGCCTTCACTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACGATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_scottii_DSM111774 CATTAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA------------TTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAC-ATTCGCGTGGCCTCCC-------------------AAAAAAA--------AAG-TGAT-GAC-AAATCACTGACTTGCCTTCACTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACGATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_scottii_DSM111775 CATTAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCCATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCGAAATA-CCACTCGCCGTTGCCGAAATCCGCGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTCTTTC-ACTTCACGCAT--------AATATGTGATGTCCACTCGTTGCAATGCGA--------GCCTGCCTCATGTGTCGCTTTGCAACCTT--TGTGGGCAAGCAG--------CT----------------GCCCCTCTTTTCGCCCGCGATTCGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCGTCAC-TGGTCT---GGCTAGAGACGCAAACAAG-AGAGGCATGA-----CATGAC-ATTCGCGTGGCCTCCC----------------AAAAAAAAAA--------AAG-TGAT-GAC-AAATCACTGACTTGCCTTCACTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACGATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACACCATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCCCTCTGTTTGTCTTGGGGGCCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATGAATGATTGCGGTA---------------------TTCGAGAATTG-TAG----CTGACCTTTTTTTCTTCCCCTCTTTTCCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--C-----GAAAACTCAC---ATTTGTTTGGGCAGGGTAACCAAATCGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCGTAATCT---TAAGTCTCCATTGAGC-------------TGCATACCGCCCTGGAGATGAGACGGAAAGAGAACG--------AAAGAA-AAGGTGTCATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe sibirica MTI_I03' CATCAACGTGGTCGTCATCGTAAGTTGACTCTTGACCTGTATCATTCGATGTATTGGATAATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCAAAAAT-TCACTCGCCGTTGCCGAAATCCACATACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTTT---ACTTCACGCAT--------AATATGTGATGCTCACTCGTTGCAATGCGA--------GCCTGCCTTATGTGTCGCTATGCGACCTT--GGTGGGCAAACAA--------CT----------------GCCCCTCTTTTCGCCCGCCATTTGAT-----------TTTTTTTTTTTTTTTT--GGGGG-----GGGCTCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCCTCAC-TGGTCT--GGGCTAGAGACGCAAACGAG-AGAGACGTGA-----CAGGAC-ATTCGCGTGGCCTTCC-----------AAAAAAAAAAAAAAA--------TTG-TGAT-GAC-GAATCACTGACTTGCCTTCGCTCTCTAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTAAGCCTTGGTCGGCA-CATTATACTCTTATCAACCCGATCTGTATCATTAACATGCATTTATTAG???????????????????????????????????????????????????????????????AAGTT-------TGACCTCTCTGTTTGTCTCGGGGACCCCCT---CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCCGCCGGGC----CCGACCACGACGTACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGATCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--ACATG--AAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--TTTCATAATCA-AAAAAGTCTCCATTGAGC-------------TGCATACCGCTCTGGAGATGAGACGGAAAGAGAACGAAAAATAAAAAGAA-AAAATGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe siegelii ATCC74483_e915_allele_1' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTCGCTAACTTA-ACTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTCGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATTTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTCTTCTTTCACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCGAGCAAG----CATCT----------------GCCCCTCTTTTCGCCCGCGATACGAACTTTTTTTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--AAGCTAGAGACGCAAACGAG-AGAGTCATGA-----CATGAC-ATTCGCGTGCCCTCCC-----------------AAAAAAAAA--------CTG-TGAT-GAC-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CAGTAGACTC-TATCAACCTGATCTGTATCACTAACGTGCATCTACTAG???????????????????????????????????????????????????????????????AAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? 'Epichloe siegelii ATCC74483_e915_allele_2' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGACATTTTACCCC--TCTCACGCAT--------AATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA----------TTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAGAAAAGACATGA-----CATGAC-ATTCGCTTGGCCCACCTCTCCCCCCCCCCTCCCCCAAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CATCAACCCGATCTGTATCATTAACGTGCATCTATTAG????????????????????????????????????????????????????????????????????????????????????????????????GGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAATGAAC-AGTCGTGATGAGAGGCGGACCGAGACAAAAAAAAAATGATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTCCT----------TCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAACAACACATG-AAAAACTCAC---ATTTCTTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTGTACAACGGTACCTCCGAGCTCCAGCTGGAGCGTATGAGCGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGCAGATGAGACGGAAAGAGAACG----------ATAA-AAAGTGTTAAC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Epichloe_stromatolonga_Chsa102 ??????????????????CGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-TCACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATACTCTACC----CCTCACGCAT--------AATATCTGATGTTCACTCGTTGCAATGCGAGCCTGCTTGCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAA----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA-----------TTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAATCCGTCAC-TGGTCTTGAGCTAGAAGACGCAAATG---AGAGACATGA-----CATGAC-ATTGGCGTGGCCGCCC------------------CAAAAAAA--------TTG-TGAT-AAA-AAATCACTGACTTGCCTTCGCTCTATAGGAAGCCGCCGAACTCGGAAAAGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGATG-CATTAGACTC-TATCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------CAACCTCTCTGTTTGTCTCGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGGC-----AAAATTAATGCATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTCCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTAGAAC----GAAAGGCACAAACA--GCATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTTTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGAGACGGAAAGAGAACG--------AGAGAA-AAAGTGCTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCCGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAA?????????????????????????? 'Epichloe sylvatica GR_10156_E7368' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGTGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA--------ATTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC------------------AAAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGACTC-TATCGACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGGAGTT-------CATTCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCGGAGCTCCAGCTCGAGCGCATGAGTGTCTACTTCAACGAGGCAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe sylvatica pollinensis A2_6' ???????????????????GTAAGTTGACT-TTGACCTGTATCGCTCGATGTATTGG---ATAATAGTTGCTAACTTG-TCTGCCAACAGGGGTACGTACTGCGAAGTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATACATCTCTTTCACTCCACGCAT--------AATATGCGACGTTCAGTCGTTGCAATGTGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATAGGAA--------TTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC-------------------AAAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-AATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTACTAG??????????????????????????????????????????????????????????????????????????????CCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTAGTGATGAGAGGCGGACCGAGAC-----AACATTAATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGACTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCAAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGGAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTGTGTGACAGGCCTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGACAGCTTTTCCGTCCTGAC????????????????????????????????????????????????????????????? 'Epichloe tembladerae ni_269648_allele_1' CATCAACGTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCATTCGATGTATTGG---ATAACAGTTGCTGACTTG-TCTGCCAACAGGGGTACGTACTGCAAAATA-TCACTCGCCGCTGCCGAAATTCACGTACTGACTGAAGCGTAGCCACGTCGATTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTTTACCCC--TCTCACGCAT--------AATATCCGATGTTCACTCGCTGCATTGCGA--------GCCTGCCTTGTGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACTT---------------GCCCCTCTTTTCGCCCGCGATACGAA--------TTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTATGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCTTGAGCTAAAAAACGCAAACGAG-AAAGACATGA-----CATGAC-ATTCGCGTGGCCCACCTCT------CCCCCCCCCCCAACAAA--------TTG-TGAT-AAA-AAATCACTGACCTCCCTGCGCTCTATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTAGACTC-CACCAACCCGATCTGTATCATTAACGTGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCG?????????????????TCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGAAGTGCAC-------GCCCAACGAAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AAAATTAATGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TGTTTCTTTCCCTCTTTTCCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--GCATG-AAAAACTCAC---ATTCATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTAAGT--CTTCATAATCT---AAAGTCTCCATTGAGCTACA---------TACATACCGCCCCGGAGATGGGACGGAAAGAGAACG--------AAAGAA-AAAGTGTTATC--ATGCTCATCCATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe tembladerae ni_269648_allele_2' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-----AAATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AATAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGA--TGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCG?????????????????TCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAGCTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGGTTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_typhina_9340 CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCTCCTCTTTTCGCCCGCGATACGAG--------TTTTTTTTTTTTTT-----------------GGTCGCGGGGCTCA-------------------------------ATCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGAAATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGCACTTCCCAGGCTGACTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGAGACGGAAAGAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG Epichloe_typhina_E8 ??????????????????????????????????????????????????????????????????????????????????????????????????????????GTA-ACACTCGCCGTTGCCGAAATTCACGTACTGACTGAAGCGCAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTCAAGGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAT--------TTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTTTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATACAA-----CATGAC-ATTCGCGTGATCTCCC-------------------AAAAAAA--------ATG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGACA-CATTGGATTC-TACCTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCCGTGTTGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGACAAGTCGTGATGAGAGGCGGACCGAGAC-----AACATTGATGAATGCGGTA---------------------TTCGAAAACCG-TAG----CTGACCT-TTTTTCT----------TTGCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-CGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--CTTCATAATCTACAAAAGTCTCCATTGAGC-------------TACATACTGCCCTGGAGATGGGGCGGGAGAAGATGG--------AAAGGA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTACGTTCCTCGCGCTGTTCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe typhina poae BlaTG_1' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAT------TTTTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-TATTAGACTC-TATTTACCCGA--TGTATCATTAACGCGCATCTATTAG??????????????????????????????????????????????????????????????????TT-------CAACCTCTCTGTTTGTCTTGGGGACCCCTT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAGCTG-T-G----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Epichloe_typhina_aonikenkana_2642 ??????????????????????????????????????????CGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCCGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------ATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCGCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAGCTG-T-G----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Epichloe_uncinata_E81 CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA------TATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ATTCGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCCTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGATCTGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CCGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGGCACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGTGTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe sinensis 57A_allele_1' CATCAACGTGGTCGTCATCGTAAGTTGACTCTTGACCTGTATCATTCGATGTATTGGATAATAACAGTTGCTAACTTG-TCTGCTCACAGGGGTACGTACTGCAAAAAT-TCACTCGCCGTTGCCGAAATCCACATACTGACTGAAGCGTAGCCACGTCGACTCTGGCAAGTCTACCACCACCGGTCACTTGATCTACCAGTGCGGTGGAATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTAAGATATTCTTTT---ACTTCACGCAT--------AATATGTGATGTTCACTCGTTGCAATGCGA--------GCCTGCCTTATGTGTCGCTATGCGACCTT--GGTGGGCAAACAA--------CT----------------GCCCCTCTTTTCGCCCGCCATTTGAT-----------TTTTTTTTTTTTTTTTTGGGGGG-----GGGCTCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCAC--CTCAACCCCTCAC-TGGTCT--GGGCTAGAGACGCAAACGAG-AGAGACGTGA-----CAGGAC-ATTCGCGTGGCCTTCC---------AAAAAAAAAAAAAAAAA--------TTG-TGAT-GAC-GAATCACTGACTTGCCTTCGCTCTCTAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGGTCGGCA-CATTATACTCTTATCAACCCGATCTGTATCATTAACATGCATTTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGACTGCGAAGTT-------TGACCTCTCTGTTTGTCTCGGGGACCCCCT---CATCGACGCGTTCCAGTGTTAAG--CCCCTGATTTCGTACCCCGCCGGGC----CCGACCACGACGTACACGCCCGCGGCCCAATGGAC-AGTCTTGTTGAGAGGCGGACCGAGAC-----AGAATTAATGATTGCGGTA---------------------TTCGAGAACTG-TAG----CTGATCT-TTTTTCT----------TTCCCTCTAGGTTCATCTTCAGACCGGTCAGTGCGTAAGTGACAAATT-CGCCGACCTCGAAC----GACAGGCACAAACA--ACATG--AAAACTCAC---ATTTATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGCAAGT--TTTCATAATCA-AAAAAGTCTCCATTGAGC-------------TGCATACCGCTCTGGAGATGAGACGGAAAGAGAACGAAAGATAAAAAGAA-AAAATGTTAAC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG 'Epichloe sinensis 57A_allele_2' CATCAACTTGGTCGTTATCGTAAGTTGACT-TTGACCTGTATCGTTCGATGTATTGG---ATAACAGTTGCTAACTTG-TCTGCTAACAGGGGTACGTACTGCGAAATA-ACACTCGCCGTTGCCGAAATTCACGTACTGACAGAAGTGTAGCCACGTCGACTCCGGCAAGTCTACCACCACCGGTCACTTGATCTACCAATGTGGTGGAATTGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGATATATCTCTTTCACTCCACGCAT--------AATATGTGACGTTCAGTCGTTGCAATGCGA--------GCCTGCCTTGCGTGTCGCTTTGCAACCTT--GGTGGGCAAGCAAG----CGACT----------------GCCCCTCTTTTCGCCCGCGATACGAA-------ATTTTTTTTTTTTTC-----------------GGTCGCGGGGCTCA---------GTCTGACTTTT---GGTGGGGCACCTCTCAACCCGTCAC-TGGTCT--GTGCTAGAGACGCAAACG---AGAGATATAA-----CATGAC-ACTTGCGTGACCTCCC--------------------AAAAAA--------TTG-TGAT-GAC-AAATCACTGACTTGCGTTTGCTCTACAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAATATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGCCTTGATCGACA-CATTAGACTC-TATTTACCCGA--TGTATCATTAACGCGCATCTATTAGACGCTCCCGGTCACCGTGATTTCATCAAGAACATGATTACTGGTACTTCCCAGGCTGATTGCGGAGTT-------CAACCTCTCTGTTTGTCTTGGGGACCCCCT---CCTCGACGCGTTCCGGTGTCGAG--CCCCTGATTTCGTACCCCGCCGAGC----CTGGCCACGACGTGCAC-------GCCCAACGGAC-AGTCGTGATGAGAGGCGGACCGAGAC-----AACATCATTGAATGCGGTA---------------------TTCGAGAACTG-TAG----CTGACC--TTTTTCT----------TTCCCTCTAGGTTCATCTTCAAACCGGTCAGTGCGTAAGTGACAAATC-TGCCGACCTCGAAC----GACAGACACAAATA--ACATG-AAAAACTCAC---ATTGATTTGGGCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTGTACAATGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGC---------------------AAGTCTCCATTGAGC-------------TACATACCGCCCTGGAGATGGGACGGAAAAAGAAGG--------AAAGAA-AAAGGTTTATC--ATGCTAATCTATGTGACAGGCTTCTGGCAACAAGTATGTTCCTCGCGCTGTCCTCGTCGATCTCGAGCCTGGTACCATGGATGCAGTCCGTGCCGGTCCCTTCGGTCAGCTTTTCCGTCCTGACAACTTCGTCTTCGGTCAGTCTGGTGCTGGCAACAACTGGGCCAAGGGTCACTACACTGAGG ; END; BEGIN SETS; CHARSET tefA = 1- 927; CHARSET tub = 928- 1716; END; begin paup; partition by_gene = 2 : tefA , tub; set partition = by_gene; Prset statefreqpr = fixed ( equal ); lset applyto = ( all ) nst = 6; lset applyto = ( all ) rates = invgamma; unlink shape = ( all ); END; BEGIN TREES; Title Epichloe_spp._tefA_tub; LINK Taxa = Taxa; TRANSLATE [0] 1 'Claviceps purpurea 20_1', [1] 2 Epichloe_amarillans_E4668, [2] 3 Epichloe_aotearoae_e899, [3] 4 'Epichloe australiensis AL1759f_allele_1', [4] 5 'Epichloe australiensis AL1759p_allele_2', [5] 6 Epichloe_baconii_9707, [6] 7 Epichloe_brachyelytri_E4804, [7] 8 'Epichloe bromicola AL0426_2_E7561', [8] 9 'Epichloe cabralii BlaTG2_allele_1', [9] 10 'Epichloe cabralii BlaTG2_allele_2', [10] 11 'Epichloe canadensis CWR34_allele_1', [11] 12 'Epichloe canadensis CWR34_allele_2', [12] 13 'Epichloe chisosa 134_allele_1', [13] 14 'Epichloe chisosa 134_allele_2', [14] 15 'Epichloe chisosa 134_allele_3', [15] 16 'Epichloe coenophiala Greek_type1_allele_1', [16] 17 'Epichloe coenophiala Greek_type1_allele_2', [17] 18 'Epichloe coenophiala Greek_type1_allele_3', [18] 19 'Epichloe coenophiala e19_allele_1', [19] 20 'Epichloe coenophiala e19_allele_2', [20] 21 'Epichloe coenophiala e19_allele_3', [21] 22 'Epichloe danica D2_5_allele_1', [22] 23 'Epichloe danica D2_5_allele_2', [23] 24 'Epichloe disjuncta A1_1_allele_1', [24] 25 'Epichloe disjuncta A1_1_allele_2', [25] 26 'Epichloe disjuncta A4_5_allele_1', [26] 27 'Epichloe disjuncta A4_5_allele_2', [27] 28 'Epichloe disjuncta C5a_1_allele_1', [28] 29 'Epichloe disjuncta C5a_1_allele_2', [29] 30 'Epichloe elymi ATCC_201553', [30] 31 'Epichloe festucae Fl1_E894', [31] 32 Epichloe_festucae_lolii_15335, [32] 33 Epichloe_gansuensis_E7080, [33] 34 Epichloe_glyceriae_E277, [34] 35 'Epichloe guerinii CBS113029_allele_1', [35] 36 'Epichloe guerinii CBS113029_allele_2', [36] 37 'Epichloe hordelymi A51_5_allele_1', [37] 38 'Epichloe hordelymi A51_5_allele_2', [38] 39 Epichloe_inebrians_e7478, [39] 40 'Epichloe melicicola 822_allele_1', [40] 41 'Epichloe melicicola 822_allele_2', [41] 42 Epichloe_mollis_AL9924, [42] 43 'Epichloe novae-zelandiae AL0725_2_allele_1', [43] 44 'Epichloe novae-zelandiae AL0725_2_allele_2', [44] 45 'Epichloe novae-zelandiae AL0725_2_allele_3', [45] 46 'Epichloe schardlii PA_10_10_allele_1', [46] 47 'Epichloe schardlii PA_10_10_allele_2', [47] 48 Epichloe_scottii_DSM112488, [48] 49 Epichloe_scottii_DSM111774, [49] 50 Epichloe_scottii_DSM111775, [50] 51 'Epichloe sibirica MTI_I03', [51] 52 'Epichloe siegelii ATCC74483_e915_allele_1', [52] 53 'Epichloe siegelii ATCC74483_e915_allele_2', [53] 54 Epichloe_stromatolonga_Chsa102, [54] 55 'Epichloe sylvatica GR_10156_E7368', [55] 56 'Epichloe sylvatica pollinensis A2_6', [56] 57 'Epichloe tembladerae ni_269648_allele_1', [57] 58 'Epichloe tembladerae ni_269648_allele_2', [58] 59 Epichloe_typhina_9340, [59] 60 Epichloe_typhina_E8, [60] 61 'Epichloe typhina poae BlaTG_1', [61] 62 Epichloe_typhina_aonikenkana_2642, [62] 63 Epichloe_uncinata_E81, [63] 64 'Epichloe sinensis 57A_allele_1', [64] 65 'Epichloe sinensis 57A_allele_2'; TREE con_50_majrule = (1:0.189888,(((24:0.0004722374,26:0.001168839,28:0.0004759233):0.001819398,(48:0.0004373378,49:0.0004488401,50:0.0004370599):0.003101594):0.01123375,((33:0.01677668,(39:0.009933899,(51:0.00170943,(36:0.0009333851,64:0.0004632825):0.001120407):0.006067644):0.004799256):0.02495267,(34:0.01680737,((((12:0.005249022,30:0.00879817):0.006602693,(52:0.00483936,(22:0.003800435,(13:0.002837484,(8:0.002401618,(37:0.007255303,44:0.002490248):0.001758293):0.001082319):0.006265994):0.008464621):0.008783993):0.002508621,(42:0.01004926,(6:0.007601812,(18:0.001162153,20:0.0004668077):0.008861564):0.002501545,(54:0.01576821,(10:0.008440306,(45:0.00474885,(14:0.007119521,(2:0.003190156,11:0.01209951):0.00226756):0.002881243):0.002878414):0.005655123):0.001960989,(53:0.01857392,(31:0.0004334213,32:0.001271739,40:0.002459853,57:0.0004189697,(4:0.003589672,(17:0.0004706642,21:0.0005879823):0.001569892):0.00103044):0.002221445):0.01479667):0.01638843):0.004354016,(7:0.006867801,((3:0.001224403,41:0.001144332):0.007764789,(((35:0.008148875,(38:0.004293115,60:0.009641161):0.003644222):0.004132857,(23:0.005276544,(55:0.004051435,(56:0.005709991,(25:0.0004706246,27:0.007857919,29:0.001160563):0.003248866):0.006074952):0.00190677):0.001234426):0.003294236,(43:0.003864359,((5:0.001588988,15:0.0005070155,47:0.0004709065,59:0.002411778):0.003538212,(63:0.000477984,(16:0.001296724,19:0.00163574):0.001726301,((9:0.0004959869,46:0.0004732539):0.001822026,((58:0.001687171,65:0.004141371):0.002211231,(61:0.00323705,62:0.002280801):0.001076273):0.001032806):0.001205947):0.002556099):0.002385694):0.002749255):0.01161256):0.008067525):0.003686717):0.003727461):0.007117484):0.006735165):0.189888); END;