NEXUS
[File created by TreeBASE:  7/26/07  20:56:11]
[Matrix accession#: M332]

BEGIN TAXA;
	TITLE M332;
	DIMENSIONS  NTAX=4;
	TAXLABELS
		Spea_multiplicata	Hymenochirus_curtipes	Silurana_tropicalis	Xenopus_laevis
	;
END;

BEGIN CHARACTERS;
	TITLE M332;
	DIMENSIONS NCHAR=1486;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Spea_multiplicata           CATTCACGCCCAGTATTCGAGCGCAACTAATTCAGGGA-CGGGAAACATGTGTGGCGGGCAGCGATGATGGCTAACCTACCAAATCACTCCAGGAGCCTAGCCGGGGCGGCCCCAGCCGCTGCCGGGACCGCCTGCCGGCTCTTCTGCTAGTTTGAACTGATAGATCTCCTT-CATTTTCAGCCATTGTTCCAAAGGCATCCACTTGGACGCCTTCCTAGTAATTGC-CCCTTTCAGGCCTCT--CTGTCGGTGGGGTCCCATCCCCCCTCGCCTCCCCGAG-TCCG--TCGTCGC-AGCGGCAGTGGGCCCCGGCTCCCTCTTCTGC-GGAGGCGCG-GGAGGGGGGCGAC-TTG-GCAGGGCAGCGGCAGGGG-GCCCGC-CGCC-CGCGCC?CGC?CCTTCCCCA--TGCCCCGGGGGGCGAGGGCCGCGCCGACAGTTGGCCCCGCCTGACAGGAGTCACGCGGGGCGGGCG-GACGCGGCGGCTCCGCCCTCCCG-GCTCCCCTCCGCGG-TTCCCAGTCGC-G-TACAGCCA-TGGGTGGGCTGGGCAGAACTTTGTGC-TGGTTCCTCAGATTGCGCGCGCGCTCAGCCTCCC-GAGCGTCGCTTTGGGACACCGCGTTACTTCCACTCCCCCCCGCTGG--GGCCGACTCCACCCTAGCGG-CGGCG---CGCCGCCCGCGTGGTGGCCGGGCAGAGCGGCCGTGGCAGGCCTCCATGGTG--CGGGCAGAGCGG-CGTGGCAGGCCCTCCACCTCGCTCTCGCGCGCGCTA-TCCTGGGCTTTCTACCACTTGATACGGACCCGTC-CGCTTCGGTCTCCTTTGAGACCACCTCCAGGC-ATCGCCAGGACTGCACGTTTAGCCAG-CAGGCTGGACCCATATCCCCGCTTTCTGATTAGCTTGGTAGATCATCGACCAAGGGAGGCTTCAAAGGGAGTCCTATCGACCGCGAGAGAG-G?AGG--------------CGTCAAAATAGGCCATTTCGCTTACTAATCTCCAGAACCCCGGCTTT-GCTAGAGTTGGATAAGAGTTTGAAATTTACCCATTCTTCGGGCCGACGCGACCGGACCTCCGGCCCGTACCTTACGCTC---GCGG-ATCACACGTGTGAAA-CCATTCGTCTGTGACCGCGACGCCCTACTTGGCTTGCGGCCCAATTCC?CGGGCTACGGCTGCGAGTAGTCTGGGGTC-TTTTCCACCAACCAACTATATCTGTCGTCCTGCCACCGGTACCTTCAGCTTCCAAGGTAAAATTG--TCGTCA--TTGTACCCAAGTCA-CCAGGATTCTTCTATTCCGCTC-G???CAAGCCTTCCCTGCCCGCTACC---------GGAGGCAACGGGAGCCGGC-TAGCTTTCCCTCAGC?CAAG-----TCTAGGGGCTT-GGGCCT--C-GCCGCC-TCTGCCC-CGGAAGCC-CCGCAGGT-CACGCCATTGCGCTGGCTAGG
		Hymenochirus_curtipes       CATTCACGCCCAGTATTCGAGCGCAACTAATTCAGGGA-CGGGAAACATGTGTGGCGGGCAGCGATGATGGCTAACCTACCAAATCACTCCAGGAGCCTAGCCGGGGCGGCCCCAGCCGGTGCCGGGACCGCCTCGCGGCTCTTCTGCCAGCTTGAACTGATAGATCTCCTTTCATTTTCAGC-ATTGTTCCAAAGGCATCCACTTGGACGCCTTCCTAGTAATTGCTCTCGAGCCAGCCGGCCGCCCTCG-TGGGGGGC?GGCTTTGCGAGTGCTTCCGGGGTCCG--CTGCTGAGA-CGGCGTAGGGCCCAG-CTCCTTCTGCTGC----GGCGC?GGGAGGGGCGAGGCC----G-AGGGCGGGG-AGGGGGCGCCCCTCCGCC?CGCCCC-CGGGGCCGGCCCCCTTGCCCCGGGGGGCGGGGGCCGCGCTGACAGTTGGCCCCGCCTGACGGGAGTCACGCGGGGC-TGCGCAGCGC-GCGGCCCGCCCCTGCGGTGCGGCCCT??GCGG-GCCCCAGGCGCCGCTACAGCCGGTGGGTGGGCTGGGCAGAACTTTGTGCCTGGTTCCTCAGATGCTGCGCGCGCTACGCCTCC--GAG-CTTGCTTTCGGGCGCCGCGTTACTTCCACTCGGCGCGCGCGC---GCCGACTCCACCCTAGGGCTCCGCGGCTCGCCTCCCGCGTGGTGGCCGGGCAGAGCGGGCG-GGCAGCCCCTCACCCTGG-CGGGCAGAGCGGTCG-GGCAGCCCCTCCACCTCG-ACTCGCTCTCACGATTCTTGGGCTTTCTACCACTTGATACGGACCCGTC-CGCTTCTTTCTCCTTTGAGACCACCTCCAGGCCATCGCCAGGACTGCACGTTTAGCCAG-CAGGCTGGACCCATATCCCCGCTTTCTGATTAGCTTGGTAGATCATCGACCAAGGGAGGCTTCAAAGGGAGTCCTATCGACCGCGAG-CAGCGTTGGGCTCTTTGGGAGCTCGTCAAAATAGACCATTTCGCTTACTAATCTCCAGAACCCCGGCTTT-GCTAGAGTTGGATAAGAGTTTGAAATTTACCCATTCTTCGGGCCGA-GCGACCGCACCTCGGCCCCGCACCTTACGCTC--TGCGG-ATCACCCG-GCGAAAACCATTCGTCT-TGACCGCGACGCCCTACTTGGCTTGCGGCCCAATTCCGCGGGCTACGGCTGCGAGTAGTCTGGGGTCCTTTTCCAC-AACCAACTATATCTGTCGTCCTGCCACCGGTACCTTCAACTTATAAGTTGCTCTGAACTCGTCACCTTTCAGTACACTTGTCGTCAACTTGT--A-CCAG-TCAGCAGGACTCTCTATCGCTCGCGGCAGTCTGCGTACGGAGCCA-CGGGAGCCGGC-TAGCTTTC--TCAGCCCAAG-----TCTAGGGGCTTAGG-CCT--C-ACCGCC-TCTGCCCGCGG-CG-CTCCGCAGGG-CAT-CCATT-CGCAGG-TCAC
		Silurana_tropicalis         CATTCACGCCCAGTATTCGAGCGCAACTAATTCAGGGATCGGGAAACATGTGTGGCGGGCAGCGATGATGGCTAACCTACCAAATCACTCCAGGAGCCTAGCCGGGGCGGCCCCAGCCGGTGCCGGGACCGCCTCGCGGCTCTTCTGCTAGTTTGAACTGATAGATCTCCTT-CATTTTCAGCCATTGTTCCAAAGGCATCCACTTGGACGCCTTCCTAGTAATTGCTCTCC-GGCGGCTCCC---CCGCGGTGCCCCGGAGCTGCTTTGCTCGCGCGGGGGGTTCGAATCGTCGTGAGCGGCAGTGGGCCCCGGCTCCCTCTGCT---?GAGGCGCC-GGAGAGATGGGGCCTTG-GCAGG??AGCGGA?????GGCCCCCCCGCC-CGCGCCCCGCCCCTTCCCC---TGCCCC???GGGCGAGGGCCGCGCCGACAGTTGGCCCCGCCTGACGG-AGTCACGCGGGGTCGGCGCGGC?CGGCGGCTCCGCCCTCCCG-GCGGCCCTCGGCGG-TCCCCAGGCGCCGCTACAG-CACAGGGTGGG-TGG-CAGAA-TTTGTGCCTGGTTCCTCAGATTGCGCGCGCG-TACGC-TCCCTGAGACGCGCTTTGGGACACCGCGTTACTTCCACTCCCGGCCC-CGCGGGGCCGACTCCACCCTAG-GC--CGCGCGGGGGAAG---CGT-----------CCCCCCCCAGGGGCCGCCCCGC?TGGTG-CCGGGCAGAGCGG-CGTGGCAGCCCCTCCACCTCGCACTCGCGCGCGCTA-TCCTGGGCTTTCTACCACTTGATACGGACCCGTC-CGCTTCGGTCTCCTTTGAGACCACCTCCAGGCTATCGCCAGGACTGCACGTTTAGCCAGTCAGGCTGGA-CCATATCC----?TTCTGATTAGCTTGGTAGATCATCGACCAAGGGAGGCTTCAAAGGGAGTCCTAT-GACCGCGACGCAGAGCAG---------------CGTCAAAATAGGCCATTTCGCTTACTAATCTCCAGAACCCCGGCTTT-GCTAGAGTTGGATAAGAGTTTGAAATTTACCCATTCTTCGGGCCGA-GCGACCGAACCTCGGCCCCGCACCTTACGCTC-GTGCGG-ATCACCCG-GTGAAAACCATTCGTCT-TGACCGCGACGCCCTACTTGGCTTGCGGCCCAATTCCGCGGGCTACGGCTGCGAGTAGTCTGGGGTC-TTTTCCAC-AACCAACTATATCTGTCGTCCTGCCACCGGTACCTTCAGCTCCCAAGGTACACTTG--TCGTCAACTTGTACCCA-GTCAGCCAGGATTCT-CTA-CCCGCTC-GCGGCAAGCCTTCCCTGCCCGCTACC---------GGAGGCAGCGGGAGCCGGCGTA-----CGAGCAGGGAGCGCTAGCTCTAGCCAGTCAGGGC-TGGCTACCGCCTTCTGCCCGCGGCCGCCGTGGAAGGGGCCACCCCCCCGCCCCCAGGTC
		Xenopus_laevis              CATTCACGCCCAGTATTCGAGCGCAACTAATTCAGGGA-CGGGAAACATGTGTGGCGGGCAGCGATGATGGCTAACCTACCAAATCACTCCAGGAGCCTAGCCGGGGCGGCCCCAGCCGGTGCCGGGACCGCCTCGCGGCTCTTCTGCTAGTTTGAACTGATAGATCTCCTT-CATTTTCAGC-ATTGTTCCAAAGGCATCCACTTGGACGCCTTCCTAGTAATTGCTCTCTGGGGGGAGTGG--GCCTCTCTCCCTTCCGCGGGCGGCGTGGGAGGGGGGGGT?CG--TCGTCGTGAGCGGCAGCGGGCCCCGGCTCCCTCTGCGGCCGGAGGCGCCAGGAG-GA-GGGGCCTCGCGCAGGGCGGCG-AGGGGGGGCCCCCCCGCCGCGCGCCCCGCCCCTTCCCCC--TTCCCCGGGGGGCGAGGGCCGCGCCGACAGTTGGCCCCGCCTGACGGGGGTCACGCGGGGCAGGCGCGGCGCGGCGGCTCCGCCCTCCCG-GCGGCCCTCGGCGG?T-CCCAGGCGCCGCTACAGCCACAGGGTGGGCTGGGCAGAACTTTGTGCCTGGTTCCTCAGATTGCGCGCGCGCTCAGCCTCCCTGAGACGCGCTTTGGGACACCGCGTTACTTCCACTCCCGGCCC-CGCGGGGCCGACTCCACCCTAG-GG-CGGCGGGGAGGGAG--GCGGGGGGGCCCCCGCCCCCCCCCCGCGGCCGCCCG?GTGGTGGCCGGGCAGAGCGGGCGGGGCAGCCCC?CCACC?CGCACTCGCGCGCGCTAATCCTGGGCTTTCTACCACTTGATACGGACCCGTC?CGCTTCGGTCTCCTTTGAGACCACCTCCAGGC-ATCGCCAGGACTGCACGTTTAGCCAG-CAGGCTGGA?CCATATCCCCGCTTTCTGCTTAGCTTGGTAGATCATCGACCAAGGGAGGCTTCAAAGGGAGTCCTATCGACCGCGA?-CAG-GCAG---------------CGTCAAAATAGGCCATTTCGCTTACTAATCTCCAGAACCCCGGCTTTAGCTAGAGTTGGATAAGAGTTTGAAATTTACCCATTCTTCGGGCCGA-GCGACCGAACCTCGGCCCCGCACCTTACGC??CGTGCGGTATCACCCG-GTGAAAACCATTCGTCT-TGACCGCGACGCCCTACTTGGCTTGCGGCCCAATTCCGCGGGCTACGGCTGCGAGTAGTCTGGGGTC-TTTTCCAC-AACCAACTATATCTGTCGTCCTGCCACCGGTACCTTCAGCTCCCAAGGTACACTTG--TCGTCAACTTGTACCCA-GTCAGCCAGGATTCT-CTA-CCCGCTC-GCGGCAAGCCTTCCCTGCCCGCTACC---------GGAGGCAGCGGGAGCCGGC-TAGCTTTCCCTCAGCCCAAG-----TCTAGGGGCTT-GGGCCT--C-ACCGCC-TCTGCCCGCGGGCGCCGGGG--GGGGCTGCGGAG-CGCCGCCGCCCC
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 EXSET * Ambiguous_Alignment = 228 - 279 1295 - 1486 ; 
 END;