NEXUS
[File created by TreeBASE:  7/26/07  20:56:13]
[Matrix accession#: M337]

BEGIN TAXA;
	TITLE M337;
	DIMENSIONS  NTAX=42;
	TAXLABELS
		Myxine_glutinosa	Lepisosteus_spatula	Hydrolagus_colliei	Goosefish_lophinus	Batrachoididae	Thunnus_thynnus	Platichthys_flesus	Myoxocephalus	Oncorhynchus	Cyprinus_carpio	Gadus_callarias	Crotalus_atrox	Bos_taurus	Saimiri_sciureus	Macaca	Homo_sapiens	Alligator_mississippiensis	Anas_platyrhynchos	Anser_anser	Struthio_camelus	Meleagris_gallopavo	Gallus_gallus	Balaenoptera_borealis	Elephas_maximus	Proechimys_guairae	Myocastor_coypus	Hystrix_cristata	Chinchilla_brevicaudata	Cavia_porcellus	Mesocricetus_auratus	Mus_musculus	Acomys_cahirinus	Oryctolagus_cuniculus	Felis_silvestris_catus	Equus_caballus	Camelus_dromedarius	Physeter_catodon	Balaenoptera_physalus	Canis_familiaris	Sus_scrofa	Capra_hircus	Ovis_aires
	;
END;

BEGIN CHARACTERS;
	TITLE M337;
	DIMENSIONS NCHAR=55;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = - ;
	MATRIX
		Myxine_glutinosa                 -RT-TGHLCGKDLVNALYIACGVRGFFYDPTKMGIVEQCCHKRCSIYDLENYCN-
		Lepisosteus_spatula              -AA-NQHLCGSHLVEALYLVCGEKGFFYNPNKVGIVEQCCHKPCTIYELENYCN-
		Hydrolagus_colliei               V-P-TQRLCGSHLVDALYFVCGERGFFYSP-K-GIVEQCCHNTCSLANLEGYCN-
		Goosefish_lophinus               VAP-AQHLCGSHLVDALYLVCGDRGFFYNP---GIVEQCCHRPCNIFDLQNYCN-
		Batrachoididae                   MAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHRPCDIFDLQSYCN-
		Thunnus_thynnus                  VAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHKPCNIFDLQNYCN-
		Platichthys_flesus               VVP-PQHLCGAHLVDALYLVCGERGFFYTP-K-GIVEQCCHKPCNIFDLQNYCN-
		Myoxocephalus                    -AD-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVEQCCHRPCNIRVLENYCN-
		Oncorhynchus                     -AA-AQHLCGSHLVDALYLVCGEKGFFYTP---GIVEQCCHKPCNIFDLQNYCN-
		Cyprinus_carpio                  NAGAPQHLCGSHLVDALYLVCGPTGFFYNP---GIVEQCCHKPCSIFELQNYCN-
		Gadus_callarias                  MAP-PQHLCGSHLVDALYLVCGDRGFFYNP-K-GIVDQCCHRPCDIFDLQNYCN-
		Crotalus_atrox                   -AP-NCRLCGSHLVEALFLICGERGFYYSP-RSGIVEQCCENTCSLYQLENYCN-
		Bos_taurus                       -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASVCSLYQLENYCN-
		Saimiri_sciureus                 -FV-NQHLCGPHLVEALYLVCGERGFFYAP-KTGVVDQCCTSICSLYQLQNYCN-
		Macaca                           -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KTGIVEQCCTSICSLYQLENYCN-
		Homo_sapiens                     -FV-NQHLCGSHLVEALYLVCGERGFFYTP-K-GIVEQCCTSICSLYQLENYCN-
		Alligator_mississippiensis       -AA-NQRLCGSHLVDALYLVCGERGFFYSP-KGGIVEQCCHNTCSLYQLENYCN-
		Anas_platyrhynchos               -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KTGIVEQCCENPCSLYQLENYCN-
		Anser_anser                      -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KTGIVEQCCENPCSLYQLENYCN-
		Struthio_camelus                 -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN-
		Meleagris_gallopavo              -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN-
		Gallus_gallus                    -AA-NQHLCGSHLVEALYLVCGERGFFYSP-KAGIVEQCCHNTCSLYQLENYCN-
		Balaenoptera_borealis            -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASTCSLYQLENYCN-
		Elephas_maximus                  -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KTGIVEQCCTGVCSLYQLENYCN-
		Proechimys_guairae               -YV-GQRLCGSQLVDTLYSVCKHRGF-YRP-SEGIVDQCCTNICSRNQLLTYCN-
		Myocastor_coypus                 -YV-SQRLCGSQLVDTLYSVCRHRGF-YRP-NDGIVDQCCTNICSRNQLMSYCND
		Hystrix_cristata                 -FV-NQHLCGSHLVEALYLVCGNDGFFYRP-KAGIVDQCCTGVCSLYQLQNYCN-
		Chinchilla_brevicaudata          -FV-NKHLCGSHLVDALYLVCGDRGFFYTP-MAGIVDQCCTSICTLYQLENYCN-
		Cavia_porcellus                  -FV-SRHLCGSNLVETLYSVCQDDGFFYIP-KDGIVDQCCTGTCTRHQLQSYCN-
		Mesocricetus_auratus             -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN-
		Mus_musculus                     -FV-KQHLCGPHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN-
		Acomys_cahirinus                 -FV-BQHLCGSHLVEALYLVCGERGFFYTP-KSGIVDQCCTSICSLYQLENYCN-
		Oryctolagus_cuniculus            -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KSGIVEQCCTSICSLYQLENYCN-
		Felis_silvestris_catus           -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCASVCSLYQLEHYCN-
		Equus_caballus                   -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTGICSLYQLENYCN-
		Camelus_dromedarius              -FA-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGSCSLYQLENYCN-
		Physeter_catodon                 -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN-
		Balaenoptera_physalus            -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN-
		Canis_familiaris                 -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN-
		Sus_scrofa                       -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCTSICSLYQLENYCN-
		Capra_hircus                     -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGVCSLYQLENYCN-
		Ovis_aires                       -FV-NQHLCGSHLVEALYLVCGERGFFYTP-KAGIVEQCCAGVCSLYQLENYCN-
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;