NEXUS
[File created by TreeBASE:  7/26/07  20:56:35]
[Matrix accession#: M433]

BEGIN TAXA;
	TITLE M433;
	DIMENSIONS  NTAX=5;
	TAXLABELS
		Isabellaria_praecipua	Albinaria_discolor	Isabellaria_haessleini	Albinaria_hohorsti	Isabellaria_adriani
	;
END;

BEGIN CHARACTERS;
	TITLE M433;
	DIMENSIONS NCHAR=617;
	FORMAT DATATYPE = DNA MISSING = - GAP = #  ;
	MATRIX
		Isabellaria_praecipua        AAGAAGCTCGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGTGAACCTGCGGAAGGATCATTATCGGATTCGCCCACGCGCCC-AAGCCGTGACTGGCAAAAGGCA-GGTAGGTTGAAGCTGATGAAACGTCAAT--TCGTGCCGGACGGGGACCGCAAGAAGCGCCGCCCCGGCGGTTGGCGCTTCCCCTTTTTC-GGGGTACCTACCTGCTCGATTACGACCACCCGCGGTGACGGCTTGAGCAT-CTGGTGCTCGCCGGGTCGTCAGGTTCAAAGAGCGCTGCCGTGATTGCTCGGCCCAGGCTGGCGCTCACTTTGAGTGAGCATGAGCGGTGCCGCCC-GGTAGGT-------------------------------------------------------------------------------------------------AGACCCGCCCTCGGTCTTCTCTTGTCCATTTTTTTTTTTTACGACCGCTTATAAAC-ATTATTGTGGCTT----GTGCAGGAGT-GCTCCTGGCTTGA-CGTCCCCG-CACT-AAATGGCAAACTGAATCGGTGGATTATAACTTTGAGCGGT
		Albinaria_discolor           AAGAAGCTCGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGTGAACCTGCGGAAGGATCATTATCGGATTCGCCCACGCGCCCCGAGCCGAGACTCGCAAGAGGCA-GGTAGGTTGAAGCTGATGTCACGTCAACTGT--TGCCGGACGGGGACCGCATGAAGCGCCGCCCCGGCGGTTGAAACGTCCCCTTTTTC-GGGGTACCTAGCTGGAC-TTTACGGCGACCCACGGTGACGGCTTGAGCAC-TTGGTGCTCGCCGGGTCGTCAGGTTCAAAGAGCGCTGCAGTGATTGCTCGGCGTAGACTG----------------------AGCGGTGCCGCCC-GGTAGGTTCAGAAGATC---GAGGTACCTATGCATCCTGATATGGGTGCGGCAGCTCCTTCTCAAGCAAGGCGCGAGGCTTAAAGAGGTCGGCGAGCTC-CGGCAGACCCGCCCTCGGTCTTCTCTCGTCCATTTTTTTCTTTTACGACCGCTAATGAAC-TTTATTGTGGCTTGTT-GTGCAGGAGTGGCTCCTGGCTCGAGCGTCCC-GGCACTGACATGGCAAACTGAATCGGTGGATTATAACTTTGAGCGGT
		Isabellaria_haessleini       AAGAAGCTCGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGTGAACCTGCGGAAGGATCATTATCGGATTCGCCCACGCGCCCCGAGCCGAGACTCGCAAGAGGCA-GGTAGGTTGAAGCTGATGTCACGTCAACTGT--TGCCGGACGGGGACCGCATGAAGCGCCGCCCCGGCGGTTGAAACGTCCCCTTTTTC-GGGGTACCTAGCTGGAC-TTTACGGCGACCCACGGTGACGGCTTGAGCAC-TTGGTGCTCGCCGGGTCGTC-GGTTCAAAGAGCGCTGCAGTGATTGCTCGGCGTAGACTG----------------------AGCGGTGCCGCCC-GGTAGGTTCAGAAGATCGGCGAGGTACCTATGCATCCTGATATGGGTGCGGCAGCTCCTTCTCAAGCAAGGCGCGAGGCTTAAAGAGGTCGGCGAGCTCTCGGCAGACCCGCCCTCGGTCTTCTCTCGTCCATTTTTT-CTTTTACGACCGCTAATAAAC-TTTATTGTTGCTTGTTTGTGCAGGAGT-GCTCCTGGCTCGAGCGTCCCCGGCACTGATATGGCAAACTGAATCGGTGGATTATAACTTTGAGCGGT
		Albinaria_hohorsti           AAGAAGCTCGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGTGAACCTGCGGAAGGATCATTATCGGATTCGCCCACGCGCCCCGAGCCGAGACTCGCAAGAGGCA-GGTAGGTTGAAGCTGATGTCACGTCGTCATTCTTGCCGGACGGGGACCGCATGAAGCGCCGCCCCGGCGGTTGAAACGTCCCCTTTTTCGGGGGTACCTAGCTGGGC----ACGACGACCCACGGTGACGGCTTGAGCATTCTGTTGCTCGCCGGGTCGTC-GGTTCAAAGAGCGCTGCAGTGATTGCTCGGCGTGGCATG----------------------AGCGGTGCCGCCCCGGT-GGCC-AGAAGATC---GAGGTACCTATGCATCCTGACATGGGTGCGGTAGCTCCTTCTCAAACAAGGCGCGAGGCTTAAAGAGGTCGGCAAGCTCTCGGCAGACCCGCCCTCGGTCTTCTCTTGTCCAAACTTTTCTTTTAAGACCGCTAATAAACTTTTATTGTGGCC---T-GTGCAGGAGTGGCTCCTGGCTCGAGCGTCCC-GGCACTGAAATGGCAAACTGAATCGGTGGATTATAACTTTGAGCGGT
		Isabellaria_adriani          AAGAAGCTCGAACTCGATCGCTTGGAGAAAGTAAAAGTCGTAACAAGGTTTCCGTAGTGAACCTGCGGAAGGATCATTATCGGATTCGCCCACGCGCCCCGAGCCGGCACTGGCAAGAGGCAACGTAGGTTGAAGCTGATGTCACGTCGTCATTCGTGCCGGACGGGGACCGCATGAAGCGCCGCCCCGGCGGTTGAAACGTCCCCTTTTTC-GGGGTACCTAGCTGGGC----ACGACGACCCACGGTGACGGCTTGAGCAT-CTGGTGCTCGCCGGGTCGTC-GGTTCAAAGAGCGCTGCAGTGACTGCTCGGCGTAGAATG----------------------AGCGGTGCCGCCC-GGTAGGTTTAGAAGATCGGTGAGGTACCTATGCATCCTGTCATGGGTGCGGCAGCTCCTTCTCAAACAAGGCGCGAGGCTTAAAGAGGTCGGCAAGCTCTCGGCAGACCCGCCCTCGGTCTTCTCTTGTCCATTTTTTTTTTTTAAGACCGCTAATAAACTTTTATTGTGGCT---T-GTGCAGGAGTGGCTCCTGGCTCGAGCGTCCC-GGCACTGAAATGGCAAACTGAATCGGTGGATTATAACTTTGAGCGGT
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = mtDNA.mam.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 CHARSET 18S = 1 - 79 ; 
 CHARSET ITS1 = 80 - 580 ; 
 CHARSET 5.8S = 581 - 617 ; 
 END;