NEXUS
[File created by TreeBASE:  7/26/07  20:56:39]
[Matrix accession#: M456]

BEGIN TAXA;
	TITLE M456;
	DIMENSIONS  NTAX=20;
	TAXLABELS
		Piper	Saruma	Acorus	Gymnostachys	Symplocarpus	Alstroemeria	Curculigo	Vellozia	Trillium	Veratrum	Smilax	Tacca	Xanthorrhoea	Nypa	Catopsis	Anigozanthos	Canna	Eriocaulon	Flagellaria	Oryza
	;
END;

BEGIN CHARACTERS;
	TITLE M456;
	DIMENSIONS NCHAR=110;
	FORMAT SYMBOLS = " 0 1 2 3 A T G C " MISSING = ? GAP = - ;
	MATRIX
		Piper              0AGTGATGTAATTCGAAG?ATGTGGTTACTTGTCGGAACCGAGGAGATAATGTTTGCGTTCTGGAGCTCTCCTCCTTCA??AGTCTCGCTTTTTACACATAAGAACGAGC
		Saruma             0AGTGATGTAATTTGAAGCATGTGGTTACTTGTCGGAACCGAGGAGATAATGTTTGCGTTCTGGAGCTCTCCTCCTTCATTAGTCTCGCTTTTTACACATAAGAACGA?C
		Acorus             1GAT?AGTGAGCCTAGAATTTGAAACGCAAATTTAAGC????GAAGATAGTATTTACGCAA?AAAGCTTTC?ATTT?TAATAATT?TATCAC?CGTAAT?TTGAACATTA
		Gymnostachys       0AGTGAGTTGGCTTGGGGCATGAGGTTAATATTTAGGACCTCGGAGGTAATGTGTGCGCCATGGAGC?TCCGACTAATAATAGCCACGTCACTTTTAAATAGTCAC?T?C
		Symplocarpus       0AGGGAGTTGACTCGGGGCACGAGGTTAATTTTTAGGACCTCGGAGGTAATGTGTGCGCCATGGAGCATCCGACTAATAATAGCCACGTCACTTTTAAATAGTCAGGTGC
		Alstroemeria       0AAGCGTTTGACTTGGGGCACCGGGTGCAGTTATAGTACCTCGGAGGTAAAAAGAGCGCAATGGAGCATCTGACCTACAATGGTCTCGTCACTCGTCAATAGTCAGGAGA
		Curculigo          0AAGCGTTTGACTTGGGGCACGAAGTTAAT?TATAGGCCCTCGGAGGCAATGTTTACGCAATGGAGCTTTTGACCTACATAGA?TTCATCATACGCAAATAGTCAG?ATC
		Vellozia           0AAGCGTTTGACTTGGCGC?CCAGGCTAATTTATAGGACCTCGGAGGTAATGAGTGCGCAATGGGCTTTTTCACTTATGATAGTTTTGTCACTCGTCAATAGTCAGGATC
		Trillium           0AAGCGTTTGACTTGGGGCAC?GAATGCAGTTATAGGACCTCGAAGGCAGAATGTGCGCCATAGGCTATCTGATCTACA?TGGT?TCGTCACTCGTAAATAGTCTGGAG?
		Veratrum           0AAGCGTTTGA?TTGGGGCACCGAATGCAAATATAGGCCAAAGGAGG?GAAATGTGAGCTATGGGCTATTCCACCTACAATGGTCTCGTCACTCGCCAATAGTCAGGA?C
		Smilax             0AAGCGTTTGACTTGGGGCACCGGGTGCAGTTATAGTACCTCGGAGGTAAAATGTGCGCAATGGAGCATCTGACCTACAATGGTCTCGTCACTCGCCAATAGTCACTACC
		Tacca              0AAGCGTGTGACTTGGGGCATGAGGTTAATTTTTAGTAGCTCGGAGGCAATATGTGCACAATGAAGCATCTGACCT?CGTTGGTCTCGTCACTCGTCAAGAGTCACTA?C
		Xanthorrhoea       0AATCGTTTGACTTAGGACACGAAGTTAATATATAGGACCTCGGAGGCAATGTGTGCGCAATGGAGCTTCTGACCTACATAAGTCTCGTCACACGCCAATAGTCAGGATC
		Nypa               0AAGCGTTTGACTTGGC?CACGAGGTTAATTTATAGTACCTCAGAGGCAATGTGTGAGCTATGGAGCATCTGACCTACAATGGTCTCGTCACTCGCCAATAGTCAGAAG?
		Catopsis           1AAGCGTTTGACCTGGCACACGAGGTTAATTTATAGGA????GGAAGCAATGTGTGCGCTAAGGAGCATCTGACCTTC?TTAGTCTCGTCACTCGTCATTAGTCTGGAGC
		Anigozanthos       0AATCGTTGGACTTGGGGTACCAGGTTAATTTATAGGACCTCAGAGGTAATGTGAGCGCAATGGAGCATCTGACCTATAATGGTCTCATCACTCGTCAAGATTCAGG?TC
		Canna              ?AAGCGTTTGACTTGGGGCACCAGGTTAATATATAG?AG?????AGGCAATGTGTGCGCAATGGAGCATCTCACCTACAATGGTCTCGTCACTCGTCAAGATTCAGGAGC
		Eriocaulon         1A?GC?TGTGAC?TGGGGCTT?AAGTGCATTAATAAGA????GGTAGGAAAGTGTGCACTAAGGAGCATCTGACTTATAATAGTCTC?TCACTCGTCAAGTGTCAGTACC
		Flagellaria        0GAGCGTTTGACTTGGCACACCAGGTTAATTTATAGGACAAAGGTAGGGATGTGTGCGCTAAGGAGCATCTGACTTTTAATAGTTTCGTCACTCGTCAAGAGTCAGGACC
		Oryza              0AAGCGTTTGACTTGGCACACCAGGTTAATAAATAGGACAAAGGTAGTAATGTGAGCGCTAAGGAGCATTTGACTTATATTAGTTTCGTCACTCGTCAATAGGAAGGTCC
	;
END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = ord PolyTcount = MINSTEPS ; 
 TYPESET * UNTITLED = unord: 1 - 110 ; 
 END;