NEXUS [File created by TreeBASE: 7/26/07 20:56:56] [Matrix accession#: M514] BEGIN TAXA; TITLE M514; DIMENSIONS NTAX=20; TAXLABELS Dennyus_hirundinis Dennyus_cypsiurus Dennyus_vauxi Dennyus_simberloffi Dennyus_wraggi Dennyus_wellsi Dennyus_adamsae_U96428 Dennyus_adamsae_U96427 Dennyus_collinsi Dennyus_thompsoni_U96425 Dennyus_thompsoni_U96424 Dennyus_singhi Dennyus_carljonesi_forresteri Dennyus_carljonesi_fosteri Dennyus_carljonesi_carljonesi Dennyus_somadikartai_U96419 Dennyus_somadikartai__U96418 Dennyus_distinctus_distinctus Dennyus_distinctus_timjonesi_2 Dennyus_distinctus_timjonesi_1 ; END; BEGIN CHARACTERS; TITLE M514; DIMENSIONS NCHAR=505; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Dennyus_hirundinis TAAGTCCTACCTTAAGACACCCCTCACTTGAATAAGGGGGGTGGCACTCTATTTGCTTTTCATAGGAGTGGCGTTTCTGGGCTACGTCTTACCTTGGGGGCAAATATCTTACTGAGGGGGTACTGTAATTACCAATTTGATTAGTGCAGTGCCCTACTTCGGGCAGTCGCTGGTAGAATGAATTTGGGGGGGGTTTTCTGTGAGGGGCCCTACATTAACTCGATTTTTTACTCTCCACTACTTTTTACCCTTACTTAGGGTGGCATTTATTCTAGTCCACCTGACATTTTTACATAAGACGGGTAGATCAAACCCGTTGGGCTTGAGGAAAAACAGTGACAAGGTCTTTTTCCACCCATTTTTTTCCTATAAAGATTTTTTAGGGTTTAGATTTTTTGGACTACTCCTAATTTTTTTTAGGATAAAATATCCCAATCTCTTTCTTGATGCCGACAACTACAGCGTGGCTAATCCCATAACTACGCCTGCCCACATTCAACCAGAA Dennyus_cypsiurus ???GTCCTATTTAAATCTTTCCCTAACCTGAATGAGAGGTTTAACTCTCTACTTATTATTTATAGGGGTAGCTTTTTTAGGCTACGTTTTACCTTGGGGCCAAATATCATTTTGAGGGGCTACAGTAATTACTAATTTAATTAGTGCTATTCCTTATTTTGGAAGTTCACTAGTTGAATGAATTTGAGGGGGGTTCTCAGTAAGAAATCCTACTTTGACTCGATTTTTCACATTACACTACTCTATGCCTATTATTAGGATAAGACTAATTTTTAGGCATTTAATTTTTTTACATGAAACAGGAAGATCTAATCCGCTTGGATTAGGAAAAAATAGAGATAAAATTTTTTTTCATCCTTTTTTTACATTAAAAGATGTATTAGGATTTATTTTATTTAGTTTTATTTTATTTTTCTTCAGAATAAAATTGCCAAACTTTTTTTTAGATACTGACAACTTTATTCTTGCTAATCCATTAGTCACTCCTGTTCATATTCAGCCTGAG Dennyus_vauxi TAAATCTTTTTTAAAATCTCCAATTACTTGATCAATTGGAGTTGCAATATATTTAATATATATGGCAGCAGCTTTTTTAGGTTATGTTTTACCATGAGGGCAAATATCATACTGAGGGGCAACAGTTATTACTAATTTATTAAGGGCAATTCCCTATATAGGACCGTTTTTAGTGGA?T?AATTTGGGGTGGATTTTCAGTTAGTAGGCCTACTTTAACTCGATTTTTTTCATTACACTATAGTCTTCCTCTAATTAGATTAGTTTTAATTATAACTCATTTAATTTTTTTACATGAAACAGGAAGATCAAATCCAATTGGATTAGGAAAAAATAGAGATAAAGTTATATTTCATCCTTACTTTACAATTAAGGATGTTATTGGTTTTATTCTTTTTTTAATTTTTTTATTTGTACTCTCTTTTAAACTTCCAAATTATTTTCTTGATTCTGATAATTTTTTAATTGCAAATCCTATAATTACTCCGGAACATATTCAGCCAGAG Dennyus_simberloffi TAAATCCTACCTTTTCGCWCCATTGACCTGAC???CCGGAG?AA??C????CCTGGC?TTTATAGCTGCAGCTTTTTTAGGGTACGTMTTGCCTTGAGGTCAAATATCTTATTGAGGGGCAACTGTAATCACTAACTTAATTAGAGCTGTTCCTTATCTAGGAAACTCGTTAGTCGAGTGAATTTGAGGAGGGTTTAGTGTTGGAAGACCAACATTGACTCGATTTTTTACACTTCATTATATAACACCTTTATTAGGAAGAGGGATTGTAATAGTACACCTT????????ACACGAAACGGGAAGAAGAAATCCTCTTGGTCTTGGTAAAAATAGAGATAAGG????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Dennyus_wraggi TAAATCTTTTATCTCGTCCCCGTTGACTTGACTCTCTGGAGTAAGTTTATATTTAATTTTTATAGCTGCTGCTTTCTTAGGATACGTATTACCTTGAGGGCAGATATCTTATTGAGGGGCTACTGTTATCACTAACTTAATTAGAGCTGTCCCTTATTTAGGAAACTCGTTAGTCGAGTGAATTTGAGGCGGGTTTAGCGTGGGAAGTCCAACATTAACTAGATTCTTTACACTTCACTATATAACACCTTTGATAGGAAGAGGAGTTGTTATAGTACATTTATTTTTTTTACACGAAACGGGAAGAAGAAATCCTCTGGGTCTTGGTAAGAACAGGGATAAAGTTTTTTTTCATCCTTATTATTCTTTTAAAGACTTAATCGGGTTTTTTTTTTTTTTTTTCGTTTTTTTCGTAATAACTTTAAGGTTTCCTTTTTTTTCAAAGGTT????????????????????????????????????????????????????????? Dennyus_wellsi TAAATCCTATCTTTTCTCTCCAATAACTTGGTTATCAGGAGTAAGACTATATCTTATTTTTATGGCAGCAGCTTTTTTAGGATACGTTTTACCTTGAGGGCAAATATCTTACTGAGGGGCCACTGTTATTACTAATTTAATTAGAGCTATTCCATATTTAGGTAGCTCATTAGTAGAATGAATTTGGGGGGGTTTCAGGGTTGGTAGGCCAACTTTAACTCGATTTTTTACACTACACTACATTACCCCTCTTATGGGAAGGTGTTTAGTAATAATTCATTTATTCTTTTTACATGAAACGGGGAGAAGAAACCCTCTGGGTTTAGGAAAAAACAGAGATAAGATTTTTTTTCATCCTTTTTTTTCTTTCAAAGATTTGATTGGTTTTATTTTTTTTTTTATGTTTTTTTTTTTTTTAGGTTTAAAGTTTCCCTTGGA??????????????????????????????????????????????????????????????????? Dennyus_adamsae_U96428 TAAATCCTATCTTTTTACTCCAATAACCTGACTATCTGGGGTCAGGTTATACCTTGCGTTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCATGAGGACAAATATCTTATTGAGGGGCCACTGTTATTACTAACCTAATTAGAGCTGTTCCATATTTAGGTAACTCACTAGTAGAATGAATCTGAGGAGGTTTTAGTGTCGGTAGGCCAACTCTAACCCGATTTTTTACACTACATTATATTACGCCTCTTTTAGGAAGGTGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACGGGAAGAAGAAATCCTCTTGGTTTAGGAAAAAACAGGGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTTTTTTTTTTTTWWTTWWTTTTTTTTTTTTTTTTRA???????????????????????????????????????????????????????????????????????????????? Dennyus_adamsae_U96427 TAAATCCTATCTTTTTACTCCAATAACCTGACTATCTGGGGTCAGGTTATACCTTGCGTTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCCTGAGGACAAATATCTTATTGAGGGGCCACTGTTATTACTAACCTAATTAGAGCTGTTCCATATTTAGGTAACTCACTAGTAGAATGAATCTGAGGAGGTTTTAGTGTCGGTAGGCCAACTCTAACCCGATTTTTTACACTACATTATATTACGCCTCTTTTAGGAAGGTGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACGGGAAGAAGAAATCCTCTTGGTTTAGGAAAAAACAGGGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTTTTTTTTTTTTTATTTATTTTTTTTTTTTGTTTGAAATTTCCTATCGTGTTTCTGGATTCTGACAATTTTTTAATTGCAAATCCTATAGTCACACCTGTTCACATTCAACCTGAA Dennyus_collinsi TAAATCCTACCTTTTTACCCCAATAACCTGACTATCTGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGG?AGCCCAAMCTTAACCCGATTTTTCACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTATCCATCTTATTTTTTTGTTTAAAATTTCCTGTTGTGTTCCTGGATTCTGACAATTTTTTAATGGCTAATCCTATAGGTACGCCAGTTCACATTCAACCTGAA Dennyus_thompsoni_U96425 TAAATCCTACCTTTTTACCCCAATAACCTGATCTATCGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGGCAGCCCAACTTTAACCCGATTTTTCACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTATCCATCTTATTTTTTTGTTTAAAATTTCCTGTGGTGTTCCTGGATTCTGACAATTTTTTAATGGCTAATCCTATAGTTACGCCAGTTCACATTCAACCTGAA Dennyus_thompsoni_U96424 TAAATCCTACCTTTTTACCCCAATAACCTGATCTATCGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGGCAGCCCAACTTTAACCCGATTTTTTACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTA??????ATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTTT????????????????????????????????????????????????????????????????????????????????????????????????????? Dennyus_singhi TAAATCTTATTTAAGTTCCCCCTTAACCTGAATTTCAGGTGTTTTTATTTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGATATGTTTTACCTTGAGGTCAAATATCTTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCCTTACCTTACTTAGGAGGTTTTTTAGTAGAATGAATTTGAGGTGGTTTTTCAGTTGGTAATCCAACTTTGACACGTTTTTTTTCTTTTCATTATTTAACTCCTTTACTTTCTTCTTTTTTTGTTTTTTTTCATTTATTTCTCTTACATAAGACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAATAGAGATAAAGTTTTTTTTCATCCTTTTTTTACTTTAAAAGATTTTTTCGGTTTTATTTTTTTTTTTTTCTGTTTGTTTTTTTTAAGGTTAAAATTTCCTACCTTTTTTTAGGTTCGGGAAAATTTTAAAATTGCAAATCCCATAACCACCACAGGTCACATTCAACCTGAA Dennyus_carljonesi_forresteri TAAATCTTATTTAAATTCTCCTTTTACATGAGTGTCAGGTGTATTTATTTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGTTATGTTTTACCTTGAGGTCAAATATCATACTGAGGGGCGACTGTAATCACTAATTTAATTAGTGCTGTACCTTATTTAGGAGGTTTTCTAGTAGAATGAATTTGAGGAGGTTTTTCAGTTGGTAATCCAACTTTAACACGTTTTTTTTCGTTTCACTATTTAACTCCTCTCCTCTCCTCTTTTTTTATTTTTTTTCATTTATTTTTTCTACATGAAACAGGAAGAAGAAATCCTCTTGGGCTTGGCAAAAATAGAGATAAGGTTTATTTTCATCCTTATTTTACTATAAAGGATTTTCTTGGTTTTCTTTTTTTTGTTTATTTTTTATTTATTTTTAGATTAAAATTCCCTACTTTTTTTATAGATTCAGATAATTGAATAATTGCAAATCCAATAACTACCCCAATCCATATTCAACCTGAA Dennyus_carljonesi_fosteri TAAATCTTATTTAAATTCTCCTTTTACATGAGTGTCAGGTGTATTTATTTTTGTTATATTTATAGCAGCAGCTTTTTTAGGTTATGTTTTACCTTGAGGTCAAATATCATACTGAGGGGCGACTGTAATCACTAATTTAATTAGTGCTTTACCTTATCTAGGAGGTTTTCTAGTAGAATGAATTTGAGGGGGTTTTTCAGTTGGAAATCCAACTTTAACACGTTTTTTTTCGTTTCACTATTTAACTCCTCTTCTCTCTTTATTTTTTATTTTTTTTCATTTATTTTATTTACATGAAACAGGAAGAAGAAATCCTCTTGGACTTGGCAAAAATAGGGATAAGGTTTATTTTCATCCTTACTTTACTTTAAAGGATTATCTTGGATTTATTTTTTTTATTTATTTTTTATTTATTTTTAGATTAAAATTCCCTACTTTTTTTATAGATTCAGATAATTGAATAATTGCAAATCCAATAACTACTCCAATCCATATTCAACCTGAA Dennyus_carljonesi_carljonesi TAAATCTTATTTAAATTCCCCTTTTACCTGAGCATCAGGTATTTTTATTTTTTTTTTATTTATAGCATCAGCTTTTTTAGGCTACGTTTTACCTTGAGGTCAAATGTCATATTGAGGGGCAACCGTGATTACAAATTTAATTAGCGCCCTACCTTATTTAGGAAGTTTTTTAGTAGAGTGAATTTGAGGAGGTTTTTCGGTTGGAAATCCAACTTTAACACGTTTTTTTTCTCTCCACTATCTAACTCCCTTACTTTCTTCTTTTTTTGTTTTTTTTCATTTATTTT?TTTACATGAAACAGGAAGAAGAAATCCTCTTGGACTTGGAAAAAACAGGGATAAAGTTTTTTTTCATCCTTATTTTACTATAAAAGATTATATTGGTTTTGTTCTTTTTTTTTTTTTTATTTCTATTTCTAGGCAAAAATCC??????????????????????????????????????????????????????????????????????????? Dennyus_somadikartai_U96419 TAAATCTTATTTAAATTCCCCTTTTACCTGAGTTTCAGGTGTTTTTTTGTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGTTACGTTCTTCCTTGAGGTCAAATATCCTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCTTTACCTTACTTAGGAAGTTTTCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTTGGAAACCCAACTTTAACACGTTTTTTTTCATTCCATTATCTAACTCCCTTACTTTCTTTATTTCTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAACAGAGATAAAGTTTTTTTCCATCCTTTTTTTACTTTAAAAGACTTTCTTGGCTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTAGATGAAAAAATTGCCAAACTTTTTTAGATACTGACACTTTATTC??TGCTAATCCATTAGTCATA????????????????????? Dennyus_somadikartai__U96418 TAAATCTTATTTAAATTCCCCTTTCACCTGAGGTTCAGGTGTTTTTTTTTTTTTTTTGTTTATAGCAGCAGCTTTTTTAGGTTACGTTCTTCCCTGAGGTCAAATATCCTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCTTTCCCTTCCCTAGGAAGTTTTCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTTGGAAACCCAACTTTAACACGTTTTTTTTCATTCCATTATCTAACTCCCTTACTTTCTTTATTTCTTGTCTTGCTTCATTTATTTTTTTTACATGAAACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAACAGAGATAAAGTTTTTTTCCATCCTTTTTTTACTTTAAAAGACTTTCTTGGCTTTTTTTTTTTTGTTTTTTTTTKGTTTTTTTTT??????????????????????????????????????????????????????????????????????????????????????? Dennyus_distinctus_distinctus TAAGTCTTATTTAAATTCACCTTTTACTTGAGTATCAGGTGTTATTATTTTTTTCTTATTTATAGCAGCAGCTTTCTTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAGTTTGAGGAGGTTTTTCAGTTGGCAATCCAACTTTAACACGTTTTTTTTCTTTTCATTACCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAA??????????????????????????????????????????????????????????????????????????????? Dennyus_distinctus_timjonesi_2 TAAGTCTTATTTAAATTCACCTTTTACTTGAGTATCAGGTGTTATTATTTTTTTTTTATTTATAGCAGCAGCTTTCCTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAGTTTGAGGAGGTTTTTCAGTTGGTAATCCAACTTTAACACGTTTTTTTTCTTTTCATTATCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAAA?????????????????????????????????????????????????????????????????????????????? Dennyus_distinctus_timjonesi_1 TAAGTCTTATTTAAATTCACCTTTTACCTGAGTATCAGGTGTTATTATTTTTTTTTTATTTATAGCAGCAGCTTTCCTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAG?TTGAGGAGGTTTTTCAGTTGTTAACCCAACTTTAACACGTTTTTTTTCTTTTCATTACCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTATTTTTATTTTTATTTGGATTAAAATTTCCTACTTTTTTTWWGGATYCRRAWAATTTTTTAATTGCAAATCCAATA???ACGC?AGTTCATATTCA?CCTGA? ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;