NEXUS
[File created by TreeBASE:  7/26/07  20:56:56]
[Matrix accession#: M514]

BEGIN TAXA;
	TITLE M514;
	DIMENSIONS  NTAX=20;
	TAXLABELS
		Dennyus_hirundinis	Dennyus_cypsiurus	Dennyus_vauxi	Dennyus_simberloffi	Dennyus_wraggi	Dennyus_wellsi	Dennyus_adamsae_U96428	Dennyus_adamsae_U96427	Dennyus_collinsi	Dennyus_thompsoni_U96425	Dennyus_thompsoni_U96424	Dennyus_singhi	Dennyus_carljonesi_forresteri	Dennyus_carljonesi_fosteri	Dennyus_carljonesi_carljonesi	Dennyus_somadikartai_U96419	Dennyus_somadikartai__U96418	Dennyus_distinctus_distinctus	Dennyus_distinctus_timjonesi_2	Dennyus_distinctus_timjonesi_1
	;
END;

BEGIN CHARACTERS;
	TITLE M514;
	DIMENSIONS NCHAR=505;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Dennyus_hirundinis                   TAAGTCCTACCTTAAGACACCCCTCACTTGAATAAGGGGGGTGGCACTCTATTTGCTTTTCATAGGAGTGGCGTTTCTGGGCTACGTCTTACCTTGGGGGCAAATATCTTACTGAGGGGGTACTGTAATTACCAATTTGATTAGTGCAGTGCCCTACTTCGGGCAGTCGCTGGTAGAATGAATTTGGGGGGGGTTTTCTGTGAGGGGCCCTACATTAACTCGATTTTTTACTCTCCACTACTTTTTACCCTTACTTAGGGTGGCATTTATTCTAGTCCACCTGACATTTTTACATAAGACGGGTAGATCAAACCCGTTGGGCTTGAGGAAAAACAGTGACAAGGTCTTTTTCCACCCATTTTTTTCCTATAAAGATTTTTTAGGGTTTAGATTTTTTGGACTACTCCTAATTTTTTTTAGGATAAAATATCCCAATCTCTTTCTTGATGCCGACAACTACAGCGTGGCTAATCCCATAACTACGCCTGCCCACATTCAACCAGAA
		Dennyus_cypsiurus                    ???GTCCTATTTAAATCTTTCCCTAACCTGAATGAGAGGTTTAACTCTCTACTTATTATTTATAGGGGTAGCTTTTTTAGGCTACGTTTTACCTTGGGGCCAAATATCATTTTGAGGGGCTACAGTAATTACTAATTTAATTAGTGCTATTCCTTATTTTGGAAGTTCACTAGTTGAATGAATTTGAGGGGGGTTCTCAGTAAGAAATCCTACTTTGACTCGATTTTTCACATTACACTACTCTATGCCTATTATTAGGATAAGACTAATTTTTAGGCATTTAATTTTTTTACATGAAACAGGAAGATCTAATCCGCTTGGATTAGGAAAAAATAGAGATAAAATTTTTTTTCATCCTTTTTTTACATTAAAAGATGTATTAGGATTTATTTTATTTAGTTTTATTTTATTTTTCTTCAGAATAAAATTGCCAAACTTTTTTTTAGATACTGACAACTTTATTCTTGCTAATCCATTAGTCACTCCTGTTCATATTCAGCCTGAG
		Dennyus_vauxi                        TAAATCTTTTTTAAAATCTCCAATTACTTGATCAATTGGAGTTGCAATATATTTAATATATATGGCAGCAGCTTTTTTAGGTTATGTTTTACCATGAGGGCAAATATCATACTGAGGGGCAACAGTTATTACTAATTTATTAAGGGCAATTCCCTATATAGGACCGTTTTTAGTGGA?T?AATTTGGGGTGGATTTTCAGTTAGTAGGCCTACTTTAACTCGATTTTTTTCATTACACTATAGTCTTCCTCTAATTAGATTAGTTTTAATTATAACTCATTTAATTTTTTTACATGAAACAGGAAGATCAAATCCAATTGGATTAGGAAAAAATAGAGATAAAGTTATATTTCATCCTTACTTTACAATTAAGGATGTTATTGGTTTTATTCTTTTTTTAATTTTTTTATTTGTACTCTCTTTTAAACTTCCAAATTATTTTCTTGATTCTGATAATTTTTTAATTGCAAATCCTATAATTACTCCGGAACATATTCAGCCAGAG
		Dennyus_simberloffi                  TAAATCCTACCTTTTCGCWCCATTGACCTGAC???CCGGAG?AA??C????CCTGGC?TTTATAGCTGCAGCTTTTTTAGGGTACGTMTTGCCTTGAGGTCAAATATCTTATTGAGGGGCAACTGTAATCACTAACTTAATTAGAGCTGTTCCTTATCTAGGAAACTCGTTAGTCGAGTGAATTTGAGGAGGGTTTAGTGTTGGAAGACCAACATTGACTCGATTTTTTACACTTCATTATATAACACCTTTATTAGGAAGAGGGATTGTAATAGTACACCTT????????ACACGAAACGGGAAGAAGAAATCCTCTTGGTCTTGGTAAAAATAGAGATAAGG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Dennyus_wraggi                       TAAATCTTTTATCTCGTCCCCGTTGACTTGACTCTCTGGAGTAAGTTTATATTTAATTTTTATAGCTGCTGCTTTCTTAGGATACGTATTACCTTGAGGGCAGATATCTTATTGAGGGGCTACTGTTATCACTAACTTAATTAGAGCTGTCCCTTATTTAGGAAACTCGTTAGTCGAGTGAATTTGAGGCGGGTTTAGCGTGGGAAGTCCAACATTAACTAGATTCTTTACACTTCACTATATAACACCTTTGATAGGAAGAGGAGTTGTTATAGTACATTTATTTTTTTTACACGAAACGGGAAGAAGAAATCCTCTGGGTCTTGGTAAGAACAGGGATAAAGTTTTTTTTCATCCTTATTATTCTTTTAAAGACTTAATCGGGTTTTTTTTTTTTTTTTTCGTTTTTTTCGTAATAACTTTAAGGTTTCCTTTTTTTTCAAAGGTT?????????????????????????????????????????????????????????
		Dennyus_wellsi                       TAAATCCTATCTTTTCTCTCCAATAACTTGGTTATCAGGAGTAAGACTATATCTTATTTTTATGGCAGCAGCTTTTTTAGGATACGTTTTACCTTGAGGGCAAATATCTTACTGAGGGGCCACTGTTATTACTAATTTAATTAGAGCTATTCCATATTTAGGTAGCTCATTAGTAGAATGAATTTGGGGGGGTTTCAGGGTTGGTAGGCCAACTTTAACTCGATTTTTTACACTACACTACATTACCCCTCTTATGGGAAGGTGTTTAGTAATAATTCATTTATTCTTTTTACATGAAACGGGGAGAAGAAACCCTCTGGGTTTAGGAAAAAACAGAGATAAGATTTTTTTTCATCCTTTTTTTTCTTTCAAAGATTTGATTGGTTTTATTTTTTTTTTTATGTTTTTTTTTTTTTTAGGTTTAAAGTTTCCCTTGGA???????????????????????????????????????????????????????????????????
		Dennyus_adamsae_U96428               TAAATCCTATCTTTTTACTCCAATAACCTGACTATCTGGGGTCAGGTTATACCTTGCGTTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCATGAGGACAAATATCTTATTGAGGGGCCACTGTTATTACTAACCTAATTAGAGCTGTTCCATATTTAGGTAACTCACTAGTAGAATGAATCTGAGGAGGTTTTAGTGTCGGTAGGCCAACTCTAACCCGATTTTTTACACTACATTATATTACGCCTCTTTTAGGAAGGTGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACGGGAAGAAGAAATCCTCTTGGTTTAGGAAAAAACAGGGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTTTTTTTTTTTTWWTTWWTTTTTTTTTTTTTTTTRA????????????????????????????????????????????????????????????????????????????????
		Dennyus_adamsae_U96427               TAAATCCTATCTTTTTACTCCAATAACCTGACTATCTGGGGTCAGGTTATACCTTGCGTTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCCTGAGGACAAATATCTTATTGAGGGGCCACTGTTATTACTAACCTAATTAGAGCTGTTCCATATTTAGGTAACTCACTAGTAGAATGAATCTGAGGAGGTTTTAGTGTCGGTAGGCCAACTCTAACCCGATTTTTTACACTACATTATATTACGCCTCTTTTAGGAAGGTGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACGGGAAGAAGAAATCCTCTTGGTTTAGGAAAAAACAGGGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTTTTTTTTTTTTTATTTATTTTTTTTTTTTGTTTGAAATTTCCTATCGTGTTTCTGGATTCTGACAATTTTTTAATTGCAAATCCTATAGTCACACCTGTTCACATTCAACCTGAA
		Dennyus_collinsi                     TAAATCCTACCTTTTTACCCCAATAACCTGACTATCTGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGG?AGCCCAAMCTTAACCCGATTTTTCACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTATCCATCTTATTTTTTTGTTTAAAATTTCCTGTTGTGTTCCTGGATTCTGACAATTTTTTAATGGCTAATCCTATAGGTACGCCAGTTCACATTCAACCTGAA
		Dennyus_thompsoni_U96425             TAAATCCTACCTTTTTACCCCAATAACCTGATCTATCGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGGCAGCCCAACTTTAACCCGATTTTTCACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTATAATTCATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTATCCATCTTATTTTTTTGTTTAAAATTTCCTGTGGTGTTCCTGGATTCTGACAATTTTTTAATGGCTAATCCTATAGTTACGCCAGTTCACATTCAACCTGAA
		Dennyus_thompsoni_U96424             TAAATCCTACCTTTTTACCCCAATAACCTGATCTATCGGAGTAAGACTATACCTGGCATTTATAGCAGCTGCTTTCCTAGGTTATGTTCTACCTTGAGGACAAATATCTTATTGAGGAGCTACTGTTATTACTAATCTTATTAGAGCAGTCCCATACTTAGGCAACTCATTAGTAGAATGAGTCTGAGGAGGTTTTAGTGTTGGCAGCCCAACTTTAACCCGATTTTTTACACTGCACTATATTACGCCTCTTTTAGGAAGATGTTTAGTTA??????ATTTATTTTTTTTACATGAAACAGGAAGAAGGAATCCTCTTGGTCTAGGAAAAAACAGAGATAAGATTTTTTTCCATCCTTTTTTTTCCTTTAAAGATTTAATTGGTTTTTTATTTTTTTTTTTTT?????????????????????????????????????????????????????????????????????????????????????????????????????
		Dennyus_singhi                       TAAATCTTATTTAAGTTCCCCCTTAACCTGAATTTCAGGTGTTTTTATTTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGATATGTTTTACCTTGAGGTCAAATATCTTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCCTTACCTTACTTAGGAGGTTTTTTAGTAGAATGAATTTGAGGTGGTTTTTCAGTTGGTAATCCAACTTTGACACGTTTTTTTTCTTTTCATTATTTAACTCCTTTACTTTCTTCTTTTTTTGTTTTTTTTCATTTATTTCTCTTACATAAGACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAATAGAGATAAAGTTTTTTTTCATCCTTTTTTTACTTTAAAAGATTTTTTCGGTTTTATTTTTTTTTTTTTCTGTTTGTTTTTTTTAAGGTTAAAATTTCCTACCTTTTTTTAGGTTCGGGAAAATTTTAAAATTGCAAATCCCATAACCACCACAGGTCACATTCAACCTGAA
		Dennyus_carljonesi_forresteri        TAAATCTTATTTAAATTCTCCTTTTACATGAGTGTCAGGTGTATTTATTTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGTTATGTTTTACCTTGAGGTCAAATATCATACTGAGGGGCGACTGTAATCACTAATTTAATTAGTGCTGTACCTTATTTAGGAGGTTTTCTAGTAGAATGAATTTGAGGAGGTTTTTCAGTTGGTAATCCAACTTTAACACGTTTTTTTTCGTTTCACTATTTAACTCCTCTCCTCTCCTCTTTTTTTATTTTTTTTCATTTATTTTTTCTACATGAAACAGGAAGAAGAAATCCTCTTGGGCTTGGCAAAAATAGAGATAAGGTTTATTTTCATCCTTATTTTACTATAAAGGATTTTCTTGGTTTTCTTTTTTTTGTTTATTTTTTATTTATTTTTAGATTAAAATTCCCTACTTTTTTTATAGATTCAGATAATTGAATAATTGCAAATCCAATAACTACCCCAATCCATATTCAACCTGAA
		Dennyus_carljonesi_fosteri           TAAATCTTATTTAAATTCTCCTTTTACATGAGTGTCAGGTGTATTTATTTTTGTTATATTTATAGCAGCAGCTTTTTTAGGTTATGTTTTACCTTGAGGTCAAATATCATACTGAGGGGCGACTGTAATCACTAATTTAATTAGTGCTTTACCTTATCTAGGAGGTTTTCTAGTAGAATGAATTTGAGGGGGTTTTTCAGTTGGAAATCCAACTTTAACACGTTTTTTTTCGTTTCACTATTTAACTCCTCTTCTCTCTTTATTTTTTATTTTTTTTCATTTATTTTATTTACATGAAACAGGAAGAAGAAATCCTCTTGGACTTGGCAAAAATAGGGATAAGGTTTATTTTCATCCTTACTTTACTTTAAAGGATTATCTTGGATTTATTTTTTTTATTTATTTTTTATTTATTTTTAGATTAAAATTCCCTACTTTTTTTATAGATTCAGATAATTGAATAATTGCAAATCCAATAACTACTCCAATCCATATTCAACCTGAA
		Dennyus_carljonesi_carljonesi        TAAATCTTATTTAAATTCCCCTTTTACCTGAGCATCAGGTATTTTTATTTTTTTTTTATTTATAGCATCAGCTTTTTTAGGCTACGTTTTACCTTGAGGTCAAATGTCATATTGAGGGGCAACCGTGATTACAAATTTAATTAGCGCCCTACCTTATTTAGGAAGTTTTTTAGTAGAGTGAATTTGAGGAGGTTTTTCGGTTGGAAATCCAACTTTAACACGTTTTTTTTCTCTCCACTATCTAACTCCCTTACTTTCTTCTTTTTTTGTTTTTTTTCATTTATTTT?TTTACATGAAACAGGAAGAAGAAATCCTCTTGGACTTGGAAAAAACAGGGATAAAGTTTTTTTTCATCCTTATTTTACTATAAAAGATTATATTGGTTTTGTTCTTTTTTTTTTTTTTATTTCTATTTCTAGGCAAAAATCC???????????????????????????????????????????????????????????????????????????
		Dennyus_somadikartai_U96419          TAAATCTTATTTAAATTCCCCTTTTACCTGAGTTTCAGGTGTTTTTTTGTTTTTTTTATTTATAGCAGCAGCTTTTTTAGGTTACGTTCTTCCTTGAGGTCAAATATCCTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCTTTACCTTACTTAGGAAGTTTTCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTTGGAAACCCAACTTTAACACGTTTTTTTTCATTCCATTATCTAACTCCCTTACTTTCTTTATTTCTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAACAGAGATAAAGTTTTTTTCCATCCTTTTTTTACTTTAAAAGACTTTCTTGGCTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTAGATGAAAAAATTGCCAAACTTTTTTAGATACTGACACTTTATTC??TGCTAATCCATTAGTCATA?????????????????????
		Dennyus_somadikartai__U96418         TAAATCTTATTTAAATTCCCCTTTCACCTGAGGTTCAGGTGTTTTTTTTTTTTTTTTGTTTATAGCAGCAGCTTTTTTAGGTTACGTTCTTCCCTGAGGTCAAATATCCTATTGAGGGGCAACTGTAATTACAAATTTAATTAGAGCTTTCCCTTCCCTAGGAAGTTTTCTAGTAGAGTGAATTTGAGGAGGCTTCTCAGTTGGAAACCCAACTTTAACACGTTTTTTTTCATTCCATTATCTAACTCCCTTACTTTCTTTATTTCTTGTCTTGCTTCATTTATTTTTTTTACATGAAACAGGAAGGAGAAATCCTCTTGGACTTGGTAAAAACAGAGATAAAGTTTTTTTCCATCCTTTTTTTACTTTAAAAGACTTTCTTGGCTTTTTTTTTTTTGTTTTTTTTTKGTTTTTTTTT???????????????????????????????????????????????????????????????????????????????????????
		Dennyus_distinctus_distinctus        TAAGTCTTATTTAAATTCACCTTTTACTTGAGTATCAGGTGTTATTATTTTTTTCTTATTTATAGCAGCAGCTTTCTTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAGTTTGAGGAGGTTTTTCAGTTGGCAATCCAACTTTAACACGTTTTTTTTCTTTTCATTACCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAA???????????????????????????????????????????????????????????????????????????????
		Dennyus_distinctus_timjonesi_2       TAAGTCTTATTTAAATTCACCTTTTACTTGAGTATCAGGTGTTATTATTTTTTTTTTATTTATAGCAGCAGCTTTCCTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAGTTTGAGGAGGTTTTTCAGTTGGTAATCCAACTTTAACACGTTTTTTTTCTTTTCATTATCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAAAA??????????????????????????????????????????????????????????????????????????????
		Dennyus_distinctus_timjonesi_1       TAAGTCTTATTTAAATTCACCTTTTACCTGAGTATCAGGTGTTATTATTTTTTTTTTATTTATAGCAGCAGCTTTCCTAGGTTATGTCTTGCCTTGAGGTCAAATATCTTATTGAGGAGCAACTGTAATTACTAATTTAATTAGAGCCTTGCCTTACTTAGGAACTTTTTTAGTTGAGTGAG?TTGAGGAGGTTTTTCAGTTGTTAACCCAACTTTAACACGTTTTTTTTCTTTTCATTACCTAACTCCTTTACTTTCTTCTCTTTTTGTTTTTTTTCATTTATTTTTTTTACATGAAACAGGAAGAAGAAATCCCCTTGGACTTGGAAAAAATAGAGATAAAGTTTTTTTCCATCCTTTTTTTTCTTATAAAGACGTTCTTGGTTTTTTTTTTTTTTTTTTATTTTTATTTTTATTTGGATTAAAATTTCCTACTTTTTTTWWGGATYCRRAWAATTTTTTAATTGCAAATCCAATA???ACGC?AGTTCATATTCA?CCTGA?
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;