NEXUS
[File created by TreeBASE:  7/26/07  20:57:02]
[Matrix accession#: M537]

BEGIN TAXA;
	TITLE M537;
	DIMENSIONS  NTAX=19;
	TAXLABELS
		Sylvilagus	Oryctolagus	Lepus_europaeus_Sib.	Lepus_europaeus_Ven.	Lepus_timidus_Russia	Lepus_arcticus	Lepus_timidus_UK	Lepus_saxatilis	Lepus_townesendii	Lepus_capensis	Lepus_californicus_TX	Lepus_americanus_ME	Lepus_othus	Lepus_callotis_2	Lepus_callotis_1	Lepus_californicus_NM	Lepus_americanus_AK	Lepus_alleni_tiburonensis	Lepus_alleni_alleni
	;
END;

BEGIN CHARACTERS;
	TITLE M537;
	DIMENSIONS NCHAR=702;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Sylvilagus                      ATGACCAACATTCGTAAAACCCACCCTCTACTAAAAATCATCAACCACTCCTTAATTGACCTTCCCACCCCATCAAACATCTCTGCCTGATGAAACTTCGGGTCCCTCCTAGGCCTATGCCTAATCATTCAAATCCTAACCGGCCTATTCTTAGCCATGCACTACACCTCCGACACACTTACAGCCTTCTCGTCAGTAACTCATATTTGTCGAGACGTAAACTACGGCTGACTAATCCGATATCTTCATGCTAACGGAGCATCAATATTCTTCATCTGCCTTTACATACACGTCGGCCGCGGTATTTACTACGGCTCCTACACTTACCTAGAAACCTGAAATATTGGCATTATCCTGCTATTCGCAGTAATAGCCACAGCTTTCATAGGCTATGTACTCCCATGAGGCCAAATATCCTTCTGAGGCGCAACCGTAATCACTAATCTTTTATCAGCCATCCCCTATATTGGAACAGCCCTAGTCGAATGGATCTGAGGGGGGTTCTCAGTCGACAAAGCCACACTCACCCGCTTCTTCGCATTCCACTTTATCCTACCATTTATCATCGCAGCTCTAGTTATAGTCCACTTACTGTTCCTCCACGAAACTGGCTCTAACAACCCAACAGGCATCCCTTCAGACTCAGACAAAATCCCTTTCCACCCTTACTACACAATTAAAGACGCCCTGGGATTTATCCCC
		Oryctolagus                     ATGACCAACATTCGCAAAACCCACCCCCTATTAAAAATTGTTAACCACTCCCTAATTGACCTTCCTGCTCCATCAAACATCTCTGCCTGATGAAACTTTGGCTCTCTACTAGGCCTGTGCCTTATAATTCAAATTTTCACTGGCCTATTCTTAGCCATACACTACACCTCTGACACAACAACAGCATTCTCATCAGTAACCCATATTTGCCGAGATGTTAACTATGGCTGACTTATCCGATACCTCCACGCTAACGGAGCATCTATATTCTTTATTTGCCTCTACATACACGTAGGCCGCGGAATCTACTATGGATCATACACATACCTAGAGACCTGAAACATTGGCATCATCCTCCTATTCGCAGTAATAGCCACAGCATTTATCGGTTATGTCCTCCCATGAGGACAAATATCATTATGGGGAGCAACCGTAATCACTAACCTCCTATCAGCAATCCCATATATCGGAACAACCTTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGATAAAGCCACTCTTACCCGATTCTTCGCTTTTCACTTCATCTTGCCATTTATCATTGCAACTTTAGTCTTAATTCACCTCCTCTTTCTACATGAAACTGGCTCCAACAACCCAACAGGAATTCCTTCAAACTCAGATAAAATCCCTTTCCACCCCTACTACACAATCAAAGACACCCTAGGTTTCCTACTC
		Lepus_europaeus_Sib.            ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCTCTAATCGACCTTCCCGCCCCCTCAAACATCTCTGCCTGATGAAACTTCGGCTCTCTATTAGGATTATGCCTAATAATCCAGATCCTAACTGGCTTATTTCTAGCCATACACTACACATCAGACACAGCTACAGCATTCTCCTCAGTTACACATATTTGCCGAGATGTAAACTACGGCTGACTCATTCGTTACTTACACGCTAATGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAACATTGGCATTATTCTACTATTCGCAGTAATGGCTACAGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAATCTTCTATCAGCCATTCCTTATATCGGAACAACTCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGATAAAGCCACACTTACCCGATTTTTCGCTTTTCACTTTATCCTCCCATTTATTATTGCAGCTCTAGTGATAATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATCCCATCAGACTCTGATAAAATCCCATTCCACCCCTACTACACAATTAAAGACGCGCTAGGATTTCTTATA
		Lepus_europaeus_Ven.            ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCTCTAATCGACCTTCCCACCCCCTCAAACATCTCTGCCTGATGAAACTTCGGCTCTCTATTGGGATTATGCCTAATAATCCAGATCCTAACTGGCTTATTTCTAGCCATACACTACACATCAGACACAGCTACAGCATTCTCCTCAGTTACACATATTTGCCGAGATGTAAACTACGGCTGACTCATTCGTTACTTACACGCTAATGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAACATTGGCATTATTCTACTATTCGCAGTAATGGCTACAGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAATCTTCTATCAGCCATTCCTTATATCGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGATAAAGCCACACTTACCCGATTTTTCGCTTTTCACTTTATCCTCCCATTTATTATTGCAGCTCTAGTGATAATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATCCCATCAAACTCTGATAAAATTCCATTCCACCCCTACTACACAATTAAAGACGCGCTAGGATTTCTTATA
		Lepus_timidus_Russia            ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTGACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA
		Lepus_arcticus                  ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA
		Lepus_timidus_UK                ?????????????????????????CCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGGAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACACATTTGCCGAGACGTAAACTACGGCTGACTCATTCGTTACCTACACGCTAACGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGACAAATATCATTCTGAGGCGCTACCGTAATTACTAATCTTTTATCAGCTATTCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA
		Lepus_saxatilis                 ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCTTCAAACATCTCAACCTGATGAAACTTTGGATCTCTGTTAGGCCTATGCCTAATAATTCAAATCCTAACTGGCCTATTCCTAGCCATACACTACACATCAGACACAGCAACAGCATTCTCCTCAGTTACACACATTTGTCGAGACGTAAATTACGGCTGACTCATCCGTTATCTACACGCTAACGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATACACTTATCTCGAAACCTGAAATATTGGCATTATCCTATTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGGCAAATATCTTTCTGAGGGGCCACCGTAATTACTAATCTTCTATCAGCCATTCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTTTTCGCTTTCCACTTCATCCTCCCATTCATCATCGCAGCACTAGTAATAATCCATTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGCATTCCATCAGACTCCGACAAAATTCCATTCCACCCTTATTATACAATCAAAGATATTCTAGGGTTTCTAGTT
		Lepus_townesendii               ATGACCAACATTCGTAAAACTCCACCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTCTTCCTAGCTATACACTATACATCAGACACAGCAACAGCATTTTCTTCAGTCACACACATTTGCCGAGACGTAAACTATGGCTGACTCATTCGTTACCTACACGCTAACGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGAAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTCATAGGCTATGTCCTCCCATGAGGACAAATATCATTCTGAGGCGCTACCGTAATTACTAATCTTTTATCAGCTATTCCCTACATTGGAACAACCCTAGTTGAATGAATTTGGGGAGGGTTCTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCCTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAATCCATCAGGTATCCCATCAGACTCTGATAAAATTCCATTCGACCCCTATTATACAATTAAAGACCTCCTAGGATTTCTCGTA
		Lepus_capensis                  ATGACCAACATTCGTAAAACT??CCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTCGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATCCTAACTGGCCTGTTCCTAGCTATACACTACACATCAGACACAGCAACAGCGTTTTCCTCAGTCACACATATTTGTCGAGACGTAAACTACGGTTGACTTATCCGTTACCTACACGCCAACGGAGCATCAATATTCTTTATTTGCTTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATACACTTATCTAGAAACCTGAAACATTGGCATTATTCTGTTATTCGCAGTAATAGCAACAGCGTTCATAGGCTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGTGCCACCGTAATTACTAATCTTCTATCAGCCATTCCTTACATCGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTCGACAAAGCCACACTAACCCGATTCTTCGCTTTCCATTTCATCCTACCATTTATCATCGCAGCTCTAGTAATAATCCATTTACTTTTCCTCCATGAAACCGGTTCTAATAATCCATCAGGAATCCCATCAGACTCTGATAAAATCCCATTTGACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTT???
		Lepus_californicus_TX           ATGACCAACATTCGTAAAACTC???CCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTCGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATCCTAACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATCGGGATTATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGACAAATCCACACTAACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGAGGCCCTAGGATTTCTTATA
		Lepus_americanus_ME             ATGACCAACATTCGTAAAACT???CCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCTCTACTAGGCCTATGCCTAATGATCCAAATCTTAACTGGCCTGTTCCTTGCTATACACTATACATCGGACACAGCAACAGCATTCTCCTCAGTCACTCATATCTGCCGAGACGTAAACTACGGCTGACTTATCCGTTATCTACACGCTAACGGAGCATCAATGTTCTTTATTTGTCTATACATACACGTAGGCCGTGGAATTTATTATGGATCATATACTTATCTGGAAACCTGAAATATTGGTATCGTTCTCCTATTTGCAGTAATAGCCACGGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAACCTCCTATCAGCTATCCCCTACATTGGGACAACCCTAGTTGAATGAATCTGAGGTGGATTTTCAGTTGATAAAGCCACTCTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCGCTAGTAATAATTCACTTACTTTTCCTTCATGAAACCGGCTCCAATAACCCATCAGGCATCCCATCAGACTCCGACAAAATCCCATTCCACCCCTATTATACAATCAAAGACGTCCTAGGATTTCTCATA
		Lepus_othus                     ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGGAACTTTGGCTCCCTATTAGGACTATGCCTAATAATCCAAATCCTAACTGGCCTATTCCTAGCTATACACTACACATCAGACACAGCAACAGCATTTTCTTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATTCGTTACCTGCACGCCAATGGAGCATCAATATTTTTTATCTGCTTATATATACATGTAGGTCGTGGAATCTACTACGGCTCATATACTTACCTAGAAACCTGGAATATTGGCATTATTCTACTATTTGCAGTAATAGCCACAGCATTTATAGGCTATGTTCTCCCATGAGGACAAATATCATTCTGAGGCGCTACTGTAATTACCAATCTTTTATCAGCTATCCCCTACATTGGAACAACCCTAGTTGAATGAATTTGAGGAGGATTTTCAGTCGACAAAGCTACACTCACCCGATTCTTCGCTTTCCACTTCATTCTCCCATTCATCATCGCAGCACTAGTGATGATTCACTTACTTTTCCTCCATGAAACTGGCTCCAATAACCCATCAGGTATCCCATCAGACTCTGATAAGATTCCATTCCACCCCTATTACACAATTAAAGACCTTCTAGGATTTCTCGTA
		Lepus_callotis_2                ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTCATCCGTTACCTGCACGCTAACGGAGCGTCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATACACTTACTTAGAAACCTGAAATATTGGTATTATTCTACTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTATCAGCCATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTTATCATTGCAGCATTAGTCATAATTCACTTACTCTTTCTCCACGAAACGGGCTCCAACAACCCATCAGGCATTCCATCAGATTCTGATAAAATCCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA
		Lepus_callotis_1                ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTCATCCGTTACCTGCACGCTAACGGAGCGTCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATACACTTACTTAGAAACCTGAAATATTGGTATTATTCTACTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTATCAGCCATCCCCTACATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTTATCATTGCAGCATTAGTCATAATTCACTTACTCTTTCTCCACGAAACGGGCTCCAACAACCCATCAGGCATTCCATCAGATTCTGATAAAATCCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA
		Lepus_californicus_NM           ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTCCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTAACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTCTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATCGGGATTATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGACAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTCCTGTCAGCTATCCCCTATATTGGGACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTAACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTTATA
		Lepus_americanus_AK             ATGACCAACATTCGTAAAACGCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATCTCAGCCTGATGAAACTTTGGCTCTCTACTAGGCCTATGCCTAATGATCCAAATCTTAACTGGCCTGTTCCTTGCTATACACTATACATCGGACACAGCAACAGCATTCTCCTCAGTCACTCATATCTGCCGAGACGTAAACTACGGCTGACTTATCCGTTACCTACACGCTAACGGAGCATCAATGTTCTTTATTTGTCTATACATACACGTAGGCCGTGGAATTTATTATGGATCATATACTTATCTGGAAACCTGAAATATTGGTATCGTTCTCCTATTTGCAGTAATAGCCACGGCATTCATAGGCTACGTCCTCCCATGAGGACAAATATCATTCTGAGGGGCTACCGTAATTACTAACTTCCTATCAGCCATCCCCTACATTGGGACAACCCTAGTTGAATGAATCTGAGGTGGATTTTCAGTTGATAAAGCCACTCTCACCCGATTCTTCGCTTTCCACTTCATCCTCCCATTCATCATTGCAGCGCTAGTCATAATTCACTTACTTTTCCTTCATGAAACCGGCTCCAATAACCCATCAGGCATCCCATCAGACTCCGACAAAATCCCATTCCACCCCTATTATACAATTAAAGACGTCCTAGGATTTCTCATA
		Lepus_alleni_tiburonensis       ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTTTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATCTACTACGGCTCATATACTTATTTAGAAACCTGAAATATTGGGATCATTCTGCTATTCGCAGTAATAGCCACAGCATTTATAGGTTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCCATTCACTATATTGGAACAACCCTAGTTGAATGAATCTGAGGGGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAATCGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGGTTTCTTATA
		Lepus_alleni_alleni             ATGACCAACATTCGTAAAACTCACCCCCTACTAAAAATTGTTAACCACTCCCTAATTGACCTTCCCGCCCCCTCAAACATTTCAGCCTGATGAAACTTTGGCTCTCTATTAGGCCTATGCCTAATAATCCAAATTCTGACTGGTCTCTTCCTAGCTATACACTATACATCAGACACAGCGACAGCATTTTCCTCAGTCACACATATTTGCCGAGACGTAAACTATGGCTGACTTATCCGTTACCTGCACGCTAACGGAGCATCAATATTCTTTATTTGCCTATATATACATGTAGGCCGTGGAATTTACTACGGCTCATATACTTATTTAGAAACCTGAAATATTGGGATCATTCTGCTATTCGCAGTAATAGCCACAGCATTCATAGGTTATGTCCTCCCATGAGGGCAAATATCATTCTGAGGAGCTACCGTAATTACTAATCTTCTATCAGCCATTCCCTATATTGGAACAACCCTAGTTGAATGAATCTGAGGAGGATTTTCAGTTGACAAAGCCACACTCACCCGATTCTTCGCTTTCCACTTTATTCTCCCATTCATCATTGCAGCATTAGTAATAATTCACTTACTCTTCCTCCATGAAACGGGCTCCAATAACCCTTCAGGCATTCCATCAGATTCCGATAAAATTCCATTCCACCCCTATTATACAATTAAAGATGTCCTAGGATTTCTTATA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 1: 1 - 700 \ 3 , 
 2: 2 - 701 \ 3 , 
 3: 3 - 702 \ 3 702 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
USERTYPE 2_1 STEPMATRIX = 4 
 A C G T 
 . 2 1 2 
 2 . 2 1 
 1 2 . 2 
 2 1 2 . 
 ; 
 
 USERTYPE 3_1 STEPMATRIX = 4 
 A C G T 
 . 3 1 3 
 3 . 3 1 
 1 3 . 3 
 3 1 3 . 
 ; 
 
 USERTYPE 1_0 STEPMATRIX = 4 
 A C G T 
 . 1 0 1 
 1 . 1 0 
 0 1 . 1 
 1 0 1 . 
 ; 
 
 USERTYPE 10_1 STEPMATRIX = 4 
 A C G T 
 . 10 1 10 
 10 . 10 1 
 1 10 . 10 
 10 1 10 . 
 ; 
 
 USERTYPE 20_1 STEPMATRIX = 4 
 A C G T 
 . 20 1 20 
 20 . 20 1 
 1 20 . 20 
 20 1 20 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;