NEXUS
[File created by TreeBASE:  7/26/07  20:57:28]
[Matrix accession#: M637]

BEGIN TAXA;
	TITLE M637;
	DIMENSIONS  NTAX=39;
	TAXLABELS
		Rana_temporaria	Rana_catesbeiana	Trachemys_scripta_elegans	Eudromia_elegans	Gallus_gallus	Lophura_nycthemera	Anas_platyrhynchos	Turdus_merula	Columba_livia	Sterna_fuscata	Crotophaga_sulcirostris	Opisthocomus_hoazin	Didelphis_marsupialis	Macropus_rufus	Dasypus_novemcinctus	Cabassous_unicinctus	Cyclopes_didactylus	Tamandua_telradactyla	Bradypus_tridactylus	Choloepus_didactylus	Loxodonta_africana	Oryctolagus_cuniculus	Homo_sapiens	Pan_troglodytes	Macaca_mulatta	Colobus_guereza	Cebus_albifrons	Leontopithecus_rosalia	Tarsius_syrichta	Propithecus_sp.	Galago_crassicaudatus	Tupaia_glis	Spalax_ehrenbergi	Mus_musculus	Rattus_norvegicus	Mesocricetus_auratus	Tonatia_silvicola	Pteropus_hypomelanus	Bos_taurus
	;
END;

BEGIN CHARACTERS;
	TITLE M637;
	DIMENSIONS NCHAR=145;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Rana_temporaria                 CCGCCGCTACCGCCTCCCCTCCAACCTGGACCAATCCTCTATCAGCTGCTCACTCTCTGCCGATGGCATTCTGACCTTCAGCGGACCAAAAATGATGTCAAACCTGGTCTCCAGCCACAGCGAGAGGCCCATCCCTGTGTCCAGA
		Rana_catesbeiana                CCGCCGCTACCGCCTCCCCTCCAACCTGGACCAATCCTCTATCAGCTGCTCACTCTCTGCTGATGGCATTTTGACCTTCAGCGGACCAAAAATGATGTCAGGCCTGGACTCCAGCCACAGCGAGAGGCCTATCCCTGTGTCCAGA
		Trachemys_scripta_elegans       CCGCAGATACCGCCTGCCTTCCAACGTGGACCAATCTGCCATCACCTGCTCCCTGTCTGCTGATGGCATGCTGACTTTCTCTGGCCCAAAAGTCCAGTCCAACATGGACACCAGCTATAGCGAGAGACCCATTCCTNNNNNNNNN
		Eudromia_elegans                CCGCCGGTACCGCCTGCCCTCCAACGTGGACCAGTCTGCCATCACCTGCTCCCTCTCCAGTGACGGCATGCTGACCTTCTCCGGCCCCAAGGTCCAGGCCAACATGGACCCCAGCCACAGCGAGAGACCCATCCCTNNNNNNNNN
		Gallus_gallus                   CCGCCGGTACCGCCTGCCTGCTAACGTGGACCAATCCGCCATCACCTGTTCCCTGTCCAGCGACGGCATGCTGACCTTCTCGGGCCCAAAGGTCCCCTCCAATATGGACCCCAGCCACAGCGAGAGGCCCATCCCCGTGTCCCGG
		Lophura_nycthemera              CCGCCGGTACCGCCTGCCCGCCAATGTGGACCAGTCTGCCATCACCTGTTCCTTGTCCAGCGACGGCATGCTGACCTTCTCGGGCCCAAAGGTCCCTTCCAATATGGACCCCAGCCACAGCGAGAGGCCCATCCNNNNNNNNNNN
		Anas_platyrhynchos              CCGCCGGTACCGCCTGCCCGCCAACGTGGACCAGTCTGCCATCACCTGCTCCCTCTCCGGCGACGGCATGCTGACCTTCTCAGGCCCCAAGGTCCCCTCCAACATGGACCCCACCCACAGCGAGAGGCCCATCCCCNNNNNNNNN
		Turdus_merula                   CCGCCGCTACCGCCTGCCCGCCAACGTGGACCAGGCTGCCATCACCTGCTCCCTGTCCAACGATGGCATGCTGACCTTCTCGGGCCCCAAGGTCCCCTCCAACATGGACGCCAGCCACAGCGAGAGGCCCATCCNNNNNNNNNNN
		Columba_livia                   CCGCCGGTACCGCCTGCCCGCCAACGTGGACCAGGCTGCCATCACCTGCTCCCTGTCCAACGACGGCATGCTGACCTTCTCGGGCCCCAAGGTCCCCGCCAACATGGACGCCAGCCACGGCGAGAGGCCCATCCCCNNNNNNNNN
		Sterna_fuscata                  CCGCCGGTACCGCCTGCCCGCCAACGTGGACCAGGCTGCCATCACCTGCTCCCTGTCCAACGACGGCATGCTGACCTTCTCTCGCCCCAAGGTCCCCGCCAACATGGACGCCAGCCACAGCGAGAGGCCTATCCNNNNNNNNNNN
		Crotophaga_sulcirostris         CCGCCGGTACCGCCTGCCTGCCAACGTGGACCAGGCTGCCATCACCTGCTCCCTGTCGAACGACGGCATGCTGACCTTCTCGGGCCCCAAGGTTCCCTCCAACATGGACACCAGCCACGTCGAGAGACCCATCCNNNNNNNNNNN
		Opisthocomus_hoazin             CCGCCGGTACCGCCTGCCCGCCAACGTGGACCAGGCTGCCATCAGCTGCTCCCTGTCCAGCGACGGCATGCTGACCTTCTCGGGCCCCAAGGTCCCCTCCAACATGGACGCCGGCCACGTCGAGAGGCCCATCCNNNNNNNNNNN
		Didelphis_marsupialis           TCGCCGATACCGCCTGCCTTCCAATGTGGACCAGGCCTCCATTTCCTGCTCCCTGTCTGCTGATGGCATGCTGACCTTCTCTGGTCCCAAGATCCACTCTAACATGGAATCAAGCCACAGTGATCGGTCCATCCCTGTATCTCGT
		Macropus_rufus                  TCGTCGATACCGTCTGCCTTCCAACGTGGATCAGGCCTCCATTTCCTGCTCCCTGTCTGCTGATGGCATGCTGACCTTCTCTGGTCCCAAGATCCACTCCAACATGGATGCAAGCCACAGTGATCGATCCATCCCTGTATCTCGT
		Dasypus_novemcinctus            CCGCCGCTACCGCCTGCCGCCCTCGGTGGACCAGTCGGCGCTCTCCTGCTCCCTGTCGGCCGACGGCATGCTGACCTTCTCGGGCCCCAAGGC---------CGTGGAGCCCGGCCACGGCGAGCGGCCCATCCCCGTGTCCCGG
		Cabassous_unicinctus            CCGCCGCTACCGCCTGCCCACCGCCGTGGACCAGTCCGCGCTGACCTGCTCCTTGTCGGCCGACGGCATGCTGACCTTCTCTGGCCCCAAGAC---------CGTGGATCCCAGCCACAGCGAGCGGCCCATCCCTGTGTCCCGG
		Cyclopes_didactylus             CCGCCGCTACCGCCTGCCCACAGCCGTGGACCAGTCTGCGCTGTCCTGCTCCCTGTCGGCCGACGGCATGCTGACCTTCTCGGGCCCCAAGCT---------CGTGGACCCCAGCCACAGCGAGCGGGCCATCCCCGTGTCCCGG
		Tamandua_telradactyla           CCGCCGCTACCGCCTGCCCACAGCCGTGGACCAGTCCGCGCTGTCCTGCTCCCTGTCGGCCGACGGCATGCTGACCTTCTCGGGCCCCAAGCT---------CGTGGACCCCAGCCACGGCGAGCGGACCATCCCCGTGTCCCGG
		Bradypus_tridactylus            CCGCCGCTACCGCCTGCCCACGGCTGTGGACCAGTCTGCACTGTCCTGCTCCCTGTCGGCCGACGGCATGCTGACCTTCTCGGGCCCCAAGAT---------CGTGGACCCCAGCCACAGCGAGCGCCCCATCCCCGTGTCCCGG
		Choloepus_didactylus            CCGCCGCTACCGCCTGCCCACGGCCGTGGACCAGTCCGCGCTGTCCTGCTCCCTGTCGGCCGACGGCATGCTGACCTTCTCGGGCCCCAAGAT---------CGTGGACCCCAGCCACAGCGAGCGCACCATCCCCGTGTCCCGG
		Loxodonta_africana              NNNNNNNNNNNNNNNNCCCTCCAACGTGGACCAGTCTGCACTCTCTTGCTCCCTGTCTGCGGACGGCATGCTGACCTTCTGTGGCCCCAAGATCCAGTCTGGCATGGATGCCAGCCACAGTGAGAGAGCCATCCCCGTGTCCCGG
		Oryctolagus_cuniculus           CCGGCGCTACCGCCTGCCTTCCAACGTGGACCAGTCGGCGCTGTCCTGCTCGCTCTCCGCGGACGGCATGCTCACCTTCTCCGGCCCCAAGGTGCAGTCCGGCCTGGACGCTGGCCACAGCGAGCGAGCCATCCCCGTGTCCCGG
		Homo_sapiens                    CCGCCGCTACCGCCTGCCGTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCTGCCGATGGCATGCTGACCTTCTGTGGCCCCAAGATCCAGACTGGCCTGGATGCCACCCACGCCGAGCGAGCCATCCCCGTGTCGCGG
		Pan_troglodytes                 NNNNNNNNNNNNNNNNCCGTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCCGCCGATGGCATGCTGACCTTCTGTGGCCCCAAGATCCAGACTGGCCTGGATGCCACCCACGCCGAGCGAGCCATCCCCGTGTCGCGG
		Macaca_mulatta                  NNNNNNNNNNNNNNNNNNNTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCCGCCGACGGCATGCTGACCTTCTCTGGCCCCAAGATCCAGACTGGCCTAGACGCCACCCATG---AGCGAGCCATTCCCGTGGCGCGG
		Colobus_guereza                 NNNNNNNNNNNNNNNNCCGTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCCGCCGATGGCATGCTGACCTTCTCTGGCCCCAAGATCCAGACTGGCCTAGATGCCACCCACG---AGCGAGCCATTCCCGTGGCGCGG
		Cebus_albifrons                 NNNNNNNNNNNNNNNNCCGTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCCGCTGACGGCATGCTGACCTTCTCTGGCCCCAAGATCCAGACTGGCCTGGACACCACCCACGGCGAGCGAGCCATCCCCGTGTCGCGG
		Leontopithecus_rosalia          NNNNNNNNNNNNNNNNCCGTCCAACGTGGACCAGTCGGCCCTGTCCTGCACCCTGTCCGCCGACGGCATGCTGACCTTCACTGGCCCCAAGATCCAGACTGGCCTGGACGCCACCCACGGCGAGCGAGCCATCCCCGTGTCGCGG
		Tarsius_syrichta                NNNNNNNNNNNNNNNNCCGTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCCGCCGATGGCATGCTGACCTTCTCTGGCCCCAAGATCCAGTCCGGCCTGGACGCCGGCCACAGCGAGCGAGCCATCCCCGTGTCACGG
		Propithecus_sp.                 NNNNNNNNNNNNNNNNCCCTCCAACGTGGACCAGTCGGCGTTGTCCTGCTCCCTGTCCGCGGACGGCATGCTGACGTTCTCCGGCCCCAAGATCCCGTCTGGCCTGGACGCCGGCCACAGCGAGCGAGCCATCCCCGTGTCGCGG
		Galago_crassicaudatus           NNNNNNNNNNNNNNNNCCTTCCAACGTGGACCAGTCGGCCCTGTCCTGCTCCGTGTCCGCAGACGGCATGCTGACATTCTCTGGCCCCAAGGTCCAGTCCGGCCTGGATGCCGGCCACAGCGAGCGAGCCATCCCCGTGTCGCGG
		Tupaia_glis                     NNNNNNNNNNNNNNNNCCTTCCAACGTGGACCAGTCGGCCCTCTCCTGCTCCCTGTCAGCAGACGGCATGCTGACCTTCTCGGGCCCCAAGGTCCAGTCGGGCCTGGACGCTGGCCACAGCGAGCGACCCATCCCCGTGTCCCGA
		Spalax_ehrenbergi               CCGCCGATACCGCCTGCCTTCCAGTGTGGACCAGTCTGCCCTTTCCTGCTCCCTGTCTGCAGATGGCATGCTGACCTTCTCTGGCCCCAAAGTCCAATCTGGCCTGGATGCTGGCCACAGTGAAAGGGCCATTCCTGTGTCTCAG
		Mus_musculus                    CCGTCGCTACCGTCTGCCTTCCAATGTGGACCAGTCCGCCCTCTCCTGCTCCCTGTCTGCTGATGGCATGCTGACCTTCTCTGGCCCCAAAGTCCAGTCCGGTTTGGATGCTGGCCACAGCGAGAGGGCCATTCCTGTGTCACGG
		Rattus_norvegicus               CCGTCGCTACCGTCTGCCTTCCAATGTGGACCAGTCCGCCCTCTCCTGCTCCTTGTCTGCGGATGGCATGCTGACCTTCTCTGGCCCCAAGGTCCAGTCTGGCTTGGATGCTGGCCACAGCGAGAGGGCCATTCCCGTGTCACGG
		Mesocricetus_auratus            CCGTCGCTACCGTCTGCCTTCCAATGTGGACCAGTCTGCCCTCTCCTGCTCCCTGTCTGCGGATGGCATGCTGACCTTCTCTGGCCCAAAGGTCCAGTCCGGCTTGGATGCTGGCCACAGTGAGAGGGCCATTCCTGTGTCACGG
		Tonatia_silvicola               NNNNNNNNNNNNNNNNCCCTCCAACGTGGACCAGTCGGCCCTCTCTTGCTCCCTGTCAGCCGACGGCATGCTGACCTTCTCTGGCCCCAAGATCCAGTCTGGCCTGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
		Pteropus_hypomelanus            NNNNNNNNNNNNNNNNCCCTCCAACGTGGACCAGTCGGCGCTGTCCTGCTCCCTGTCCGCCGACGGCATGCTGACCTTCTCCGGCCCCAAGGTCCCATCTGGCGTGGACGCCGGCCACAGCGAGCGAGCCATCCCCGTGTCGCGG
		Bos_taurus                      CCGCCGCTACCGCCTGCCTTCCAACGTGGACCAGTCCGCACTCTCCTGCTCCCTGTCCGCTGATGGCATGCTGACCTTCTCTGGCCCCAAGATCCCATCTGGCGTGGACGCCGGCCACAGCGAGCGGGCCATCCCCGTGTCCCGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 145 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 END;