NEXUS
[File created by TreeBASE:  7/26/07  20:58:14]
[Matrix accession#: M770]

BEGIN TAXA;
	TITLE M770;
	DIMENSIONS  NTAX=43;
	TAXLABELS
		Trebouxia_from_SG1_Letharia_lupina	Trebouxia_from_TC1_Letharia_barbata	Trebouxia_from_K148_Letharia_gracilis	Trebouxia_from_K141_Letharia_gracilis	Trebouxia_from_B1_Letharia_gracilis	Trebouxia_from_T23b_Letharia_lupina	Trebouxia_from_T23a_Letharia_lupina	Trebouxia_from_CL3_Letharia_lucida	Trebouxia_from_CL2_Letharia_barbata	Trebouxia_from_V1_Letharia_rugosa	Trebouxia_from_CL1_Letharia_rugosa	Trebouxia_from_K2_Letharia_gracilis	Trebouxia_from_TC1_Letharia_lupina	Trebouxia_from_TB1_Letharia_lupina	Trebouxia_from_T4_Letharia_lupina	Trebouxia_from_ST2_Letharia_lupina	Trebouxia_from_SH1_Letharia_lupina	Trebouxia_from_MV1_Letharia_lupina	Trebouxia_from_L22b_Letharia_lupina	Trebouxia_from_K2_Letharia_lupina	Trebouxia_from_D1_Letharia_lupina	Trebouxia_from_CL1_Letharia_lupina	Trebouxia_from_AP1_Letharia_lupina	Trebouxia_from_Pseudevernia_consocians	Trebouxia_from_Pseudevernia_cladonia	Trebouxia_from_IT2_Letharia_vulpina	Trebouxia_from_IT1_Letharia_vulpina	Trebouxia_from_AV3_Letharia_vulpina	Trebouxia_from_AV2_Letharia_vulpina	Trebouxia_from_Pseudevernia_furfuracea	Trebouxia_from_CP1_Letharia_rugosa	Trebouxia_from_CP2_Letharia_rugosa	Trebouxia_from_TB1_Letharia_barbata	Trebouxia_from_TB2_Letharia_barbata	Trebouxia_from_SG1_Letharia_lucida	Trebouxia_from_LP1_Letharia_barbata	Trebouxia_from_OC1_Letharia_barbata	Trebouxia_from_D2_Letharia_lucida	Trebouxia_from_L20a_Letharia_lucida	Trebouxia_from_T3_Letharia_lucida	Trebouxia_from_ST1_Letharia_lucida	Trebouxia_from_EP1_Letharia_lucida	Trebouxia_from_ST1_Letharia_barbata
	;
END;

BEGIN CHARACTERS;
	TITLE M770;
	DIMENSIONS NCHAR=360;
	FORMAT DATATYPE = DNA MISSING = n GAP = -  ;
	MATRIX
		Trebouxia_from_SG1_Letharia_lupina           GATGGAcaGGTGGATAA-tCCtCTCC---Cc----ATGA-CAC-TGT-Atg-CT-GTAGTATG-T-AgGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TgA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTgAAAGGTTC
		Trebouxia_from_TC1_Letharia_barbata          GAtGGAcAGGTGGAtCA-TCCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTC-T--TA-T-ATCAACTCC-------------------------TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_K148_Letharia_gracilis        GATGGAcAGGTGGAtCa-tCCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTaGTATG-T-AgGCA-CA-GCtGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AgC--GgA-TTCATCt--AG---CTG--GC--CA-TG----NT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------Cg-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_K141_Letharia_gracilis        GATGgAcaGGTGGAtCA-tCCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTCATCT--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CG-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_B1_Letharia_gracilis          GATGGAcAGGTGGAtaa-TCCtCTCC---Cc----ATGA-CAC-TGT-TTG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GAA-TTTATCC--Ag---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_T23b_Letharia_lupina          GATGGACAGGTGGATCA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTCATCT--AG---CTG--GC--CA-TG----TT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAAcTCCA---------------------CG-TGTGCAT-TTGCAGgTCATcACcATTGgcagtGAaagGTtc
		Trebouxia_from_T23a_Letharia_lupina          GATGGACAGGTGGATCA-TCCTCTCC---CC----ATGA-CAC-tGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCTGGC-AA-TGTtG-TGTCTAGTCC-CTTTCATT--C-TCTG--tGA-Gt-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTCATCT--AG---CTG--GC--CA-TG----TT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAAcTCCA---------------------CG-tGTGCAT-TTGCAGGtCaTcAccAttGGCAgTGaaAGgTtC
		Trebouxia_from_CL3_Letharia_lucida           GATGGAcAGGTGGATAa-tCCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAgTATG-T-AgGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-Tg----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-gTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_CL2_Letharia_barbata          GAtGGAcaGGTGGATAa-TCCtCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTgAAAGGTTC
		Trebouxia_from_V1_Letharia_rugosa            GaTGGAcAGGtGGataA-TcCTcTcC---CC----AtGA-cac-TGT-ttG-cT-GTAGtAtG-T-AGGCA-cA-GCAGGC-AA-tGtTG-tGTcTAGTcC-CTTTCATT--c-TcTG--tGa-Gt-ACCAGGTcTGC--C-CA--CaAtTT--AAGc---------------TTTT-------GTcCC---AGC--GaA-tTTATCC--AG---CTG--GC--CA-TG----aT-ACCACCTG-------TG--TGT--AC------CTcATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGgTCATCACCATTGGCAGtGAAAGgtTC
		Trebouxia_from_CL1_Letharia_rugosa           GATGGAcAGGTGGAtaA-tCCTCTCC---Cc----ATGA-CaC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_K2_Letharia_gracilis          GATGGAcaGGTGGataa-TcCTCTCC---cC----ATGA-CAC-tGT-ATG-CT-GTAgTATG-T-AgGCA-CA-GCAgGC-AA-TGTtG-TGTCTAgTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--Ag---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TgT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TgTGCAT-TTGCAGGTCATCACCaTtGGCAGTGAAAGGTTC
		Trebouxia_from_TC1_Letharia_lupina           gaTGGGcAGGTGGATAA-tCCTCTCC---Cc----ATGA-CAC-TGT-TTG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_TB1_Letharia_lupina           GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-TTG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-tGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-Gt-ACCAGGTCTGC--T-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGgTCAtcACcaTTGgcAGtGAAAGgTtc
		Trebouxia_from_T4_Letharia_lupina            GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGgTCatCACcATtGGcagtGAAAGgttc
		Trebouxia_from_ST2_Letharia_lupina           GAtgGAcaGgTgGAtaa-TCcTCTCC---Cc----ATGA-CAC-TGT-ATG-Ct-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_SH1_Letharia_lupina           GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAAcTCCA---------------------CC-TGTGCAT-TTGcAGgTCAtcAccatTGGCAgTGAAAGgtTC
		Trebouxia_from_MV1_Letharia_lupina           GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_L22b_Letharia_lupina          GAtGGAcaGgTgGAtaa-TCCtCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--Ag---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_K2_Letharia_lupina            GATGGAcAGGTGGAtaa-TCCtCTCC---Cc----ATGA-CAC-TGT-TTG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GAA-TTTATCC--Ag---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_D1_Letharia_lupina            GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGgTCatCACcATtGGcagtGAAAGgttc
		Trebouxia_from_CL1_Letharia_lupina           GATGGACAGGTGGATAA-TNCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTtG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-tGTGCAT-TTGCAGgTCATCACcaTTGGCAGtGAAAGgTtc
		Trebouxia_from_AP1_Letharia_lupina           GATGGACAGGTGGATAA-TCCTCTCC---CC----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGG--GAA-TTTATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAAcTCCA---------------------CC-tGTGCAT-TTGcAgGTCatcAccattGgcagtGaAaGgttc
		Trebouxia_from_Pseudevernia_consocians       GATGGCcAGGT--atCccTTttTAGC-TGC-----AAgAGCACAT--CA-------TAGCATG-T-AG-CAGC-TGCAG-CAAACTGC-GCAGCATA-TGC-C-T--AGTAACCTGTTT-TGGTGGGATCTGAT--G-g-TGCTGGCTGATCA-AAGC-----T--CACTTGG---CCA--TA---C---AGAGCACTGA---AA--CAAA--TACTG-TGCAGCA-TGCTT-ATGA--AG--G-TACAAGTG-CTGTACGC-ATG--TGTAACAG-TTG--CT---CA--TACAG--------------------CT-TATG-ATaTTGCAGGTCATCACCATTGGCAGCGAAAGGTTC
		Trebouxia_from_Pseudevernia_cladonia         GATGGCcAGGT--atCccTTttTAGC-TGC-----AAgAGCACAT--CA-------TAGCATG-T-AG-CAGC-TGCAG-CAAACTGC-GCAGCATA-TGC-C-T--AGTAACCTGTTT-TGGTGGGATCTGAT--G-g-TGCTGGCTGATCA-AAGC-----T--CACTTGG---CCA--TA---C---AGAGCACTGA---AA--CAAA--TACTG-TGCAGCA-TGCTT-ATGA--AG--G-TACAAGTG-CTGTACGC-ATG--TGTAACAG-TTG--CT---CA--TACAG--------------------CT-TATG-ATaTTGCAGGTCATCACCATTGGCAGCGAAAGGTTC
		Trebouxia_from_IT2_Letharia_vulpina          GACGGCCAGGT--G-AA-TTT---GCCTGCCTGCCATGT-C-------A-GATT-GTCACA-G-T-GG-CTGCA-CCTG-CTAG-TATT-CTGCC-----CACAC-CA-C--C-TGTGC-TGGTGTGAT-AG-T-TATTTTGTAG-CAAATCACAAGCAT--GTGCCA-GTGGTGTTCAAT---GGCTCT-TGA--C-TTTCTC-TCCACAGAC-CTGATGCGACAG-G-TGGATGTTTTG--G-TCCTA-TGACAGCAC----TGGGCACAGCTG-TATTGA----CA--T---GG-------------------CTTTGTT-TTGCTGCAGgTCATTACCATTGGCAgTGAAAGgTTC
		Trebouxia_from_IT1_Letharia_vulpina          GAtGGCcAGgT--a-aA-tTT---GCaTGcCTGCcatgT-CTCAtGTCa-gATt-GtCaCA-G-T-GG-ctGca-CCtG-CtAG-taTT-CtGCC-----CaCAt-CA-t--C-TGTGC-TgGTGTGAT-ag-T-tACgTTGtag-CaACTCacaagCat--gTGCCa-gTGGTTTTCAat---GgcTC-AtGAg-A-Tt-TtT--CCGCAgAT-CtgATgCgACag-G-TTGATgTTCTG--G-TCCtA-TGAca-c-CGCcA-GG-TGCAGCTg-TaTtTa----Ca--T---gg-------------------CTttatt-tTGctgCaGgCTaTCaCCaTtgGCAgTGAAAGgTTC
		Trebouxia_from_AV3_Letharia_vulpina          gATGGCcagGt--a-AA-Ttt---gcaTgcCTGCCATGT-CTCATGTCA-GAtT-GTcaCA-G-T-GG-cTgCA-CCTG-CTAG-TAtT-CTGCc-----CACAT-CA-T--C-TGTGC-TGGTGTGAT-AG-T-TACGTTGTAg-CAACTCACAAGCAT--GTGCCA-GTGGTTTTCAAt---GGCTC-ATGAG-A-TT-TTT--CCGCAgAT-CTGATGCgACAG-G-TTGATGTTCTG--G-tCCTA-tgACA-C-CGCCa-GG-TGCagCTG-TaTTTA----CA--T---GG-------------------CTTTATT-TTGCTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_AV2_Letharia_vulpina          gATGGCcagGt--a-AA-Ttt---gcaTgcCTGCCATGT-CTCATGTCA-GAtT-GTcaCA-G-T-GG-cTgCA-CCTG-CTAG-TAtT-CTGCc-----CACAT-CA-T--C-TGTGC-TGGTGTGAT-AG-T-TACGTTGTAg-CAACTCACAAGCAT--GTGCCA-GTGGTTTTCAAt---GGCTC-ATGAG-A-TT-TTT--CCGCAgAT-CTGATGCgACAG-G-TTGATGTTCTG--G-tCCTA-tgACA-C-CGCCa-GG-TGCagCTG-TaTTTA----CA--T---GG-------------------CTTTATT-TTGCTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_Pseudevernia_furfuracea       GATGGCCAGGT--G-AA-TTt---GCTTGCCTGGCATGT-CGCA----A--AAT-GTCACAGGATTGG-CGGGATAC-G--AAG-T-CCGCACCC---------T-CAGG--C--GATCATGGCAGG--CAGTTGTACAAT-CAGTcTGCCCACAT-CAACAGTGCTG-GTG-TTAG-AATTATGT-T--ATGAC-AGAT-AAAA--AGCATATGCC-----AGTGGTGCT-GAAGTGCTGTTGATCCTTGT--cTACATACC-TGA-TGCAACAGGTAAAGCGA--CACCTCCAGGTGCAGCTGTAATTACATGGcTTTGTT-TTGCTGCGAGTCATTACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_CP1_Letharia_rugosa           GATGGAcAGGTGGATAA-tCCTCTCC---cC----ATGA-CaC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_CP2_Letharia_rugosa           GAtGGAcAGGTGGAtaa-tCcTCTCC---Cc----ATGA-CAC-TGT-ATG-Ct-GTagTATG-T-AgGCA-CA-GCTGGc-aA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGgTCATCACCATTGGCAGTgAAAGGTTC
		Trebouxia_from_TB1_Letharia_barbata          GATGGAcaGGTGGATAA-tCCtCTCC---Cc----ATGA-CAC-TGT-Atg-CT-GTAGTATG-T-AgGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TgA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTgAAAGGTTC
		Trebouxia_from_TB2_Letharia_barbata          GATGGAcaGGTGGATAA-tCCtCTCC---Cc----ATGA-CAC-TGT-Atg-CT-GTAGTATG-T-AgGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TgA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTgAAAGGTTC
		Trebouxia_from_SG1_Letharia_lucida           GATGGAcAGGTGGAtaa-tCCTCTCC---Cc----ATGA-CaC-TGT-ATG-CT-GTAgTATG-T-AGGCA-CA-GCTGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTTCC---AGC-TGGA-TAAATCC---G---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CC-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_LP1_Letharia_barbata          GATGGACAGGTGAaTAa-tTCTCTCC---CC----AtgA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAgGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCACgTCTGC--C-CA--AAATTT--AAGC---------------TtTT-------GTCTC---AgG--AgA-tTCaTCC--ag---cTG--GC--Ca-Tg----At-ACCacCTG-------TG--TGT--aC------CTCAtCTG-T-gTA-C-ATCaACTCCa---------------------Cg-TgTGCaT-TTGCAggTcatCacCATTgGCAgTgAAAgGTtC
		Trebouxia_from_OC1_Letharia_barbata          GATGGAcAGGTGAaTAA-TtCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-GTAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TgA-GT-ACCACGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCTC---AGG--AGA-TTCATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-C-ATCAACTCCA---------------------CG-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTtC
		Trebouxia_from_D2_Letharia_lucida            GATGGACAGGtGaATAA-TCCTcTCC---CC----ATGA-CAC-TGt-ATG-CT-GTAGTGTG-T-AGGTA-CA-GCAGgC-AA-TGTtG-tGTCTAGTCC-CTTTCATT--C-TCTG--TGA-GT-ACCaGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTcATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAAcTCCA---------------------CG-tGTGCaT-TTGcaGGtcATcaccAtcGGcaGtgaAAggTtc
		Trebouxia_from_L20a_Letharia_lucida          GATGGAcAGGTGaATAA-tCctCTCc---CC----ATGA-CAC-TGT-ATG-CT-GTAGTgTG-T-AgGTA-CA-GCAgGC-aA-TGTTG-TGTCTAgTCC-CTTTCAtT--C-TCTG--TGA-GT-ACCAGGTCTGC--C-CA--caATTT--aAGC---------------TTTT-------GTCCC---AGC--GGA-TTCATCC--AG---cTG--Gc--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-AtCaACtCCA---------------------CG-TGTGcat-tTGCagGTCaTCACCAtCgGcaGTgaAAggTtc
		Trebouxia_from_T3_Letharia_lucida            GATGGAcAGGTGAAtAa-tCCTCTCC---Cc----ATGA-CAC-TGT-ATG-CT-gTAGTgTG-T-AGGTA-CA-GCAGGC-AA-TGTTG-TGTCTAGTCC-CTTTCATT--C-TCTG--TgA-GT-ACCAGGTCTGC--C-CA--CAATTT--AAGC---------------TTTT-------GTCCC---AGC--GGA-TTCATCC--AG---CTG--GC--CA-TG----AT-ACCACCTG-------TG--TGT--AC------CTCATCTG-T-GTA-T-ATCAACTCCA---------------------CG-TGTGCAT-TTGCAGGTCATCACCATCGGCAGTgAAAGGTTC
		Trebouxia_from_ST1_Letharia_lucida           GATGGACaGGTgAGTAa-TCCcCTCC---Cc----ATgA-CAC-TGT--T-A----TAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTC-----C-CTTTCATT--C-TCTG--TGA-GT-AACAGGGCTG-TTTG----CAAGTC--AAGG---------------TTTT-------GTCCC---AGC--AgA-TTCATCC--AG---CTG--GC--CA-Tg----AT-ACCACCTG-------TG--TGC--AC------CCCATCTG-T-GTA-T-GTGAACTCC-G--------------------CG-TGTGCAT-TTGCAGGTCATCACCATTGGCAGTGAAAGGTTC
		Trebouxia_from_EP1_Letharia_lucida           GATGGACAGGTGAGTAA-TCCCCTCC---CC----ATGA-CAC-TGT--T-A----TAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTTG-TGTC-----C-CTTTCATT--C-TCTG--TGA-GT-AACAGGGCTG-TTTG----CAAGTC--AAGG---------------TTTT-------GTCCC---AGC--AGA-TTCATCC--AG---CTG--GC--TA-TG----AT-ACCACCTG-------TG--TGC--AC------CccATCTG-T-GTA-T-GTCAACTCC-G--------------------CG-TGTGCAT-TTGCAgGTCATCACCATTGGCAgTGAAAGgTTC
		Trebouxia_from_ST1_Letharia_barbata          GATGGACAGGTGAGTAA-TCCCCTCC---CC----ATGA-CAC-TGT--T-A----TAGTATG-T-AGGCA-CA-GCAGGC-AA-TGTtG-tGTC-----C-CTTTCATT--C-TCtG--tGA-GT-AACAGGGCTG-TTTG----CAAGTC--AAGG---------------TTTT-------GTCCA---AGC--AGA-TTCATCC--AG---CTG--GC--CA-TG----AT-ACCACCtG-------TG--TGC--AC------CCCATCTG-T-GTA-T-GTCAACTCC-G--------------------CG-TGTGCATT-TGCAgGTCAtCACcAttGGcagtGaAaGgttc
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 360 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;