NEXUS
[File created by TreeBASE:  7/26/07  20:58:15]
[Matrix accession#: M771]

BEGIN TAXA;
	TITLE M771;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Fusarium_sambucinum	Curvicladium_cigneum_MUCL40269	Xenocylindrocladium_serpens_MUCL39315	Cylindrocladium_spathiphylli_ATCC44730	Cylindrocladium_sp._Dom4_MT2	Cylindrocladium_spathiphylli_IMI167983	Cylindrocladium_citri_CBS_18636	Cylindrocladium_spathulatum_ATCC62616	Cylindrocladium_floridanum_ATCC22677	Cylindrocladium_floridanum_ATCC18882	Cylindrocladium_pseudogracile_PPRI4176	Cylindrocladium_gracile_ATCC22833	Cylindrocladium_sp.Slu2_MT1	Cylindrocladium_pteridis_IMI354530	Cylindrocladiella_parva_MUCL636	Cylindrocladiella_camelliae_MUCL31395
	;
END;

BEGIN CHARACTERS;
	TITLE M771;
	DIMENSIONS NCHAR=410;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Fusarium_sambucinum                          CCGAGTTTACAACTCCCAAACCCC-TGTGAAC-ATACCTTAA-TGTTGCCTCGGCGGATCAGCCCGCGCCCCGTAAAAC-GGGACG-GCCCGCCAGAGGACCCAA---ACTCTAATGTTTCT---TATTGTAACTTCTGAGTAAAACAAACAAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGTTTGGTGTTGGGGATCGGCT---CTGCCCTTCTGGCGGT---GCCGC-CCCCGAAATACATTGGCGG
		Curvicladium_cigneum_MUCL40269               CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTCAAACGTTCCCTCGGCGG---------TGTCCCGCGCTCCGGCAAGG-GCCCGCCAGAGGACCCAACAAACTCTTT-GTATTTCAATCTAGTATCTTCTGAGTGAAAACAAACAATAAATAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCTCTTCT--GGCTTGGTGTTGGGGATCGGCACGGGCGCCCTCAGGGGCGCT--GCCGTTCCCCCAAATCTAGTGGCGG
		Xenocylindrocladium_serpens_MUCL39315        CCGAGTTTACAACTCCCAAACCCAATGTGAACTATACCTGTT-CGTTCCCTCGGCGG---------TGTTCGCTGCTTCGGCAGAG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATCT---TT-AGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGACGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAATTCCTCTTTTGGGATTGGTGTTGGGGATCGGCA-AGGCGACCTTCGGGCCGC---GCCGT-CCCCTAAATCTAGTGGCGG
		Cylindrocladium_spathiphylli_ATCC44730       CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG
		Cylindrocladium_sp._Dom4_MT2                 CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATATTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG
		Cylindrocladium_spathiphylli_IMI167983       CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATATTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCT-------GCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATATAGTGGCGG
		Cylindrocladium_citri_CBS_18636              CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GAAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_spathulatum_ATCC62616        CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTAAAAAACA--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-AGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_floridanum_ATCC22677         CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTAAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATCTAGTGGCGG
		Cylindrocladium_floridanum_ATCC18882         CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCACCTTCGGGAGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTTCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_pseudogracile_PPRI4176       CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_gracile_ATCC22833            CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_sp.Slu2_MT1                  CCGAGTTTACAACTCCCAAACCCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAAACAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladium_pteridis_IMI354530           CCGAGTTTACAACTCCCAAAACCCATGTGAAC-ATACCTGTTTCGTTCCCTCGGCGG---------TGTCCG--------GCAACG-GCCCGCCAGAGGACCCAACAAACTCTTTTGAATTT---TTCAGTATCTTCTGAGTGAAAAAAA-CAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTC-------AGCTTGGTGTTGGGGATCGGCA-GGGCGTCCTCCGGGTCGC---GCCGT-CCCCCAAATTTAGTGGCGG
		Cylindrocladiella_parva_MUCL636              CCGAGTTTACAACTCCCAAACCCC-TGTGAACTATACCTTTA-CGTTGCCTCGGCGG---------CGTCC---GCTTCGGCG----GCCCGCCAGAGGACCCAA---ACTCTT--GTATTTGAATTGAGTATTCTCTGAGTGATACAAG-CAATAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCCCC----GGGCTTGGTGTTGGAGATCGGCA-ACTGCCCCTTGCGGGTGC---GCCGT-CTCCCAAATCTAGTGGCGG
		Cylindrocladiella_camelliae_MUCL31395        CAGAGTTTACAACTCCCAAACCCC-TGTGAACT-TACCATGT-CGTTGCCTCGGCGG---------TGTCTT--GCTTCGGCGA---GCCCGCCAGAGGACCCAACAAACTCTT--GTTTTT----TTAGTATTATCTGAGTGACAAGTT-TAATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTT-GAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAACCCCC----GGGTTTGGTGTTGGAGATCGACA-TGAAGCCCTTCTGGGTGTGAAGTCGT-CTCCCAAATATAGTGGCGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 410 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;