NEXUS
[File created by TreeBASE:  7/26/07  20:58:30]
[Matrix accession#: M826]

BEGIN TAXA;
	TITLE M826;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Stylocheilus_longicauda	Phyllaplysia_taylori	Phyllaplysia_sp.	Petalifera_ramosa_Philippines	Petalifera_ramosa_Canary_Islands	Notarchus_indicus_Philippines	Notarchus_indicus_Japan	Dolabrifera_dolabrifera	Dolabella_auricularia_Mexico	Dolabella_auricularia_Guam	Bursatella_leachii	Aplysia_punctata	Aplysia_cervina	Akera_bullata	Haminoea_virescens	Bulla_gouldiana
	;
END;

BEGIN CHARACTERS;
	TITLE M826;
	DIMENSIONS NCHAR=377;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Stylocheilus_longicauda                AAGGAGCNAAAA-TAGTCTATCTAAGCACTCAATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-CTAAA---CCAGGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAACGATAG-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
		Phyllaplysia_taylori                   AAGGAGCTAAAA-TAAAATATCTAAGCACT-AATGCTAATGAATG------------CAAAGCTAAAACTTAAAGGACATGGCGGCGGAAATTAAATTT-AGGGGAATTTACCAGGTAATTGACAACCCTCAAGAAAAG-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGGCCCGAAAGGG-TAAAG---CCAGGAAGACAGGTCATGGTGCAGCTAATGTAAAGGACAT-TAAGGTGAGTTACAATAAAGAATTATTTCGGAATGAAGATGTAACAGCGACAG-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATACG-CTTTGAATTACAAAAATTTTC-GTGC
		Phyllaplysia_sp.                       AAGGAGCTAAAA-TAAAATATCTAAGCACT-AATGCTAAAATATG-------------AAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGGCCCGAAAAGG-TTCAG---CCAGGAAGACAGGTCATGGTGCAACCTATGTAAAAGACT-GTAAGGTGAGTTACAATAAAAACTTTTTTCGGAATAAAGATGTAAGAACAATAA-GAAGATGGACTT-AAAAGTAATTGCTAAAG-AAATACG-CTTTGAATTACAAAAATTTTC-GTGC
		Petalifera_ramosa_Philippines          AAGGAGCCAAAAA-TAATCATCTAAGCACT-AATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-ATAAA---CCAAGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAGCGATAG-GAAGATGGACTT-AAAAGTAATTGCTAGAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
		Petalifera_ramosa_Canary_Islands       AAGGAGCCAAAAA-TAGTCATCTAAGCACT-AATGCT---------TC---GGC---CATAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGAAGGGCCCGAAAAGG-CTAAA---CCAGGAAGACAGGTCATGGTGCAGCCTATGTAGAGGACAT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATAGAGATGTAATAACGATAG-GAAGATGGACTT-AAAAGTAATTGCTAGAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
		Notarchus_indicus_Philippines          AAGGAGCTACAA--TAATAATCTAAGCACT-AAGGCT------------------ATAGTAGCTAAAACTTAAAGAACATGGCGGCAAGAATAATTTTT-AGGGGAACTTACCAGGTAATAGACAACCCGCAAAAAACA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCTC-TCT-TGAGAAGGGCCCGCTAA-----------CC-AAAAGACAGGTCATGGTGCAGCCAATATAAAGGACTA-TAAGGTGAGTTACAATAAAGAATGTTTTCGGAATTGAAATGTAAAAGTGATAA-GAAGATGGACTT-AACAGTAATTGCTAAAG-AAATATG-CTTTGAAGTATAAAGATTCTC-GTGC
		Notarchus_indicus_Japan                AAGGAGCCACAA--TAATAATCTAAGCACT-AAGGCT------------------ATAGTAGCTAGAACTTAAAGAACATGGCGGCAAGAATAATTTTT-AGGGGAACTTACCAGGTAATAGACAACCCGCAAAAAACA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCTC-TCT-TGAGAAGGGCCCGCTAA-----------CC-AAAAGACAGGTCATGGTGCAGCCAATATAAAGGACTA-TAAGGTGAGTTACAATAAAGAATGTTTTCGGAATTGAAATGTAAAAGTGATAA-GAAGATGGACTT-AACAGTAATTGCTAAAG-AAATATG-CTTTGAAGTATAAAGATTCTC-GTGC
		Dolabrifera_dolabrifera                AAGGTGCTAAAAAC--AATATCTAAGCACT-AATGCTAAAAATTG-----------CCAAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TAAAAGTTTGTATACCGCCGTCTAGGGCCC-TTT-TGAGAAGGACCCGAAAAGG-TTAAG---CCAAAAAGACAGGTCATGGTGCAGCCTATGTGAAGGACAT-TAAGGTGAGTTACAATAAAAACTTTTTTCGGAATAGAGATGTAAGAATAATAA-GAAGATGGACTT-AAAAGTAATTGCTATAG-AAATATG-CTTTGAATTACAAAAATTTTC-GTGC
		Dolabella_auricularia_Mexico           AGGGAGCAAAAA-TATATAATCTAAGCACT-AATGCCTAAC---------------GTAAGGCTAAAACTTAAAGNACATGGCGGCGAGAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTAT----TCAAAGTTTGTATACCGCCGTCTAGGGCCC-TCT-CGAGAAGGACCCGAAAAGAATAAAAATTTCCATAAGACAGGTCATGGTGCAGCCTATATAAAGGTCA-GTAAGGTGAGTTACAATAAATAATTTTTTCAGAGTAAAGATATAATAGCAGAAACAAAGATGGACTT-AACAGTAATTATTAAAG-AAATATA-TTTTGAAG--TAAAAATTCTC-GTGC
		Dolabella_auricularia_Guam             AAGGAGTAGAAA-TACATAATCTAAGCACT-AATGCCTAAC---------------GCAAGGCTAAAACTTAAAGAACATGGCGGCGAGAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCCCAAAAGAAA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTAGGGCCC-TCT-CGAGAAGGACCCGAAAAGAATAAAAA-TTCTATAAGACAGGTCATGGTGCAGCCCATATAAAGGTCA-GTAAGGTGAGTTACAATAAATAGTTTTTTCGGAGTAAAGATGTAACAGCAAAAACAAAGATGGACTT-AACAGTAATTATTAGAG-AAATATA-TTTTGAAGAA-AAAAATTCTC-GTGC
		Bursatella_leachii                     AAGGAGCCAAAAA-TAAATATCTAAGCACT-AATACTTTA------TC--------ATAAAGTTAAAACTTAAAGAACATGGCGGCGGAAATTAAATTT-AGGGGAACTTACCAGATAATTGACAACCCTCAAGAAAAA-TCACCTTTAC----TCAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TAAGGAGGGCCCGAAATGA-GTAAG---TCAGGAAGACAGGTCATGGTGCAGCCTATGTAAAGGACTT-TAAGGTGAGTTACAATAAAAATTTCTTTCGGAATGAAGATGTAATAACTAAAG-GAAGATGGACTT-AAAAGTAATAGCTAAAG-AAGTATG-CTTTGAATTACAAAAATTTTC-GTGC
		Aplysia_punctata                       CGGGAGTGAAAA-TAAAATATCTAAGCACT-AAGGCTTACCAGTGAATAAAAGCTAACAAAGCTAAAACTTAAAGAACATGGCGGCGGAAATTAAGTTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTTT----TAAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TAAGGAGGGCCCGAAATGG-ATTAA---CCGTCAAGACAGGTCATGGTGCAGCCTATATAAAGGACTAGTAAGGTGAGTTACAATAATAATTTATTTCGGAATAAAAATGTAAAAATTGAAG-GAAGATGGACTT-AACAGTAATTACTAAAG-AAGTATG-TTTTGAAACACAAAAATTTTCGGTGC
		Aplysia_cervina                        AAGGAGTGAAAACTTAAATATCTAAGCACT-AAGGCTTAAAAGTGATTAA--ACTAA-AAAGCTAAAACTTAAAGAACATGGCGGCGGAAATAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCTCAAAAAAAA-TCACCTTTAT----TTAAAGTTTGTATACCGCCGTCTTGGGCCC-TCT-TGAGGAGGGCCCAGAATTATGTA----ATAAATAAGACAGGTCATGGTGCAGCCTATATAAAGGACT-GTAAGGTGAGTTACAATAGTAATTTACTTCGGAATAAAAATGTAAGAATAAAAG-GAAGATGGACTT-AACAGTAATTACTAAAG-AAATATG-TTTTGAAACACAAAGATTTTC-GTGC
		Akera_bullata                          AAGGAGTGAAAA--CAACTACCTAAGCACT-AATACCT--------TC---------CAAGGTTAAAACTTAAAAAGCATGGCGGCGGAAAAAAAATTT-AGGGGAACTTACCAGGTAATTGACAACCCCCAAGGGAAG-TTACCTTTAT----TTAGAGTTTGTATACCGCCGTTTAGGACCC-TCT-TACGGAGGGTCCGAGAAGATTATTC--ATCAAGAAAACAGGTCATGGTGCAGCCAATATAAAGGTCT--TGAGGTGAGTTACAATAAAAATTTTTTTCGGAATAAAAATGTAAGATT-GAAG-GAAGATGGACTT-AACAGTAATTGCTAAAG-GAATACG-CTTTGAAG-AAAAAATTTTTC-GTGT
		Haminoea_virescens                     TAACCCACAAGAA--AAATCCTTAAGCACT-ACAGCTC-------------------TAAAGCTAAAACTTAAATAACATGGCGGC-GAGCTTAAATTTCAGAGGAACCTACCAGGTAAATGATAACCCGCAATTTATTCTTACTTTATC----TAAAAGTTTATATATCGCCGTCTAGTAATC-TTC-CGAGAAGGCTACAAAATGTACTAT---TACAATAAGACAGGTCATGACATAGCATATGATAAAGACT--TGAGGTGGGTTACAATAAGAAATTCTTTCGGAAAAGTTGCCTAAAGGCATGCTCCAAGATGGATTTGAA-AGTAATAGTTAA-GATAAATAGACTTTGAATT-TTTCTAAGTTC-GTGT
		Bulla_gouldiana                        TAGCCCACAAAGA---AAATTCTAAGCACT-ACAGCTA-------------------TAAAGCTAAAACTTAAAGAACATGGCGGC-GGGCTCTAACTTCAGGGGAACCTACCAGATAAATGATAACCCGCAAAATT-----TCTTACTCTCCCTAATAACTTATATATCGCCGTCAGTGTGATCTTTGAAGAAA-ATTACAAAATGTATTAC---TACAAGAAGACAGGTCATGACATAGTAGATGGGAGAGAC--GTAAGGTGGGTTACAATAAAAATTTTTTTCAGAC-GCTGGTTCATAAATCAGCTATAAGATGGACTTGAA-AGTAAATGTTAAAAGAAATATGCAACTGAATC-AATAAGAGCAC-GTGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 377 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;