NEXUS
[File created by TreeBASE:  7/26/07  20:58:32]
[Matrix accession#: M844]

BEGIN TAXA;
	TITLE M844;
	DIMENSIONS  NTAX=22;
	TAXLABELS
		Hypochilus_thorelli_isolate_THOR_3	Hypochilus_thorelli_isolate_THOR_4	Hypochilus_thorelli_isolate_THOR_2	Hypochilus_thorelli_isolate_THOR_1	Hypochilus_pococki_isolate_POCK_3	Hypochilus_pococki_isolate_POCK_1	Hypochilus_pococki_isolate_POCK_2	Hypochilus_pococki_isolate_POCK_4	Hypochilus_sheari_isolate_SHEA_1	Hypochilus_sheari_isolate_SHEA_2	Hypochilus_coylei	Hypochilus_gertschi_isolate_GERT_1	Hypochilus_gertschi_isolate_GERT_2	Hypochilus_kastoni_isolate_KAST_2	Hypochilus_kastoni_isolate_KAST_1	Hypochilus_petrunkevitchi_isolate_PETR_2	Hypochilus_petrunkevitchi_isolate_PETR_1	Hypochilus_bernardino	Hypochilus_bonnetti	Hypochilus_sp._South_Fork_Colorado	Hypochilus_jemez	Sphodros_abbotti
	;
END;

BEGIN CHARACTERS;
	TITLE M844;
	DIMENSIONS NCHAR=349;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = -  ;
	MATRIX
		Hypochilus_thorelli_isolate_THOR_3             GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGVIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENLAKLQFFVMFVGVNLTFFPQHFLGLNGM
		Hypochilus_thorelli_isolate_THOR_4             GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGVIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSL-------------------------------------
		Hypochilus_thorelli_isolate_THOR_2             GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGIIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNESLAKLQFFVMFVGVNLTFFPQHFLGLNGM
		Hypochilus_thorelli_isolate_THOR_1             GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEVGAGTGWTIYPPLSSVIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGISMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTY-----------------------------------------------------------------
		Hypochilus_pococki_isolate_POCK_3              --------RMNNLSFWLLPPSLILLLLSSLNETGVGTGWTIYPPLSSAIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_pococki_isolate_POCK_1              --------RMNNLSFWLLPPSLVLLLLSSLNETGVGTGWTIYPPLSSAIAHAGISVDMAIFSLHLAGASSIMGAINFITTIVNMRVKGVSMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFTLFFGVSLNEKMAKLQFFVMFLGVNLTFFPQHFLGLNGM
		Hypochilus_pococki_isolate_POCK_2              GAPDMAFPRMNNLSFWLLPPSLILLLVSSLNETGAGTGWTIYPPLSSSIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_pococki_isolate_POCK_4              --------RMNNLSFWLLPPSLILLLLSSLNETGVGTGWTIYPPLSSAIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMESVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGISLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_sheari_isolate_SHEA_1               GAPDMAFPRMNNLSFWLLPPSLVLLLASSLSEMGAGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTILNMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPVLFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_sheari_isolate_SHEA_2               ---------MNNLSFWLLPPSLVLLLASSLSEMGAGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTILNMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPVLFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_coylei                              GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEAGAGTGWTIYPPLSGAIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWS-----------------------------------------------------------------------------------------------
		Hypochilus_gertschi_isolate_GERT_1             ---------MNNLSFWLLPPSLILLLLSSLSEMGVGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFSLFFGVSLNDKMAKLQFYVMFIGVNMTFFPQHFLGLNGM
		Hypochilus_gertschi_isolate_GERT_2             GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEMGAGTGWTIYPPLSSSIAHAGVSVDLAIFSLHLAGASSIMGAINFITTIINMRLKGVSMDKVPLFVWSVFITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGVTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFSLFFGVSLNEKMAKLQFFVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_kastoni_isolate_KAST_2              GAPDMAFPRMNNLSFWLLPPSFMLLLMSSLNEIGAGTGWTIYPPLSGGMAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVTMESVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHVISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKFRAPLLWSVGFVFLFTLGGVTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFYGVNLNERLSKLQFSIMFIGVNMTFFPQHFLGLNGM
		Hypochilus_kastoni_isolate_KAST_1              GAPDMAFPRMNNLSFWLLPPSLILLLMSSLNEIGAGTGWTIYPPLSGGVAHAGVSVDMAIFSLHLAGASSIMGAINFITTIVNMRIKGVTMESVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKFSAPLLWSVGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNERLSKLQFSIMFIGVNMTFFPQHFLGLNGM
		Hypochilus_petrunkevitchi_isolate_PETR_2       GAPDMAFPRMNNLSFWLLPPSLILLLMSSLNEVGVGTGWTIYPPLSSTVAHSGVSVDMAIFSLHLAGASSIMGAINFITTIFNMRLKGVSMEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGVYFKFNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNEYLSKLQFFVMFIGVNMTFFPQHFLGLNGM
		Hypochilus_petrunkevitchi_isolate_PETR_1       GAPDMAFPRMNNLSFWLLPPSLVLLLMSSLNEVGAGTGWTIYPPLSGVNGHSGVSVDMAIFSLHLAGASSIMGAINFITTIFNMRLKGVSMESVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGVYFKFNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNEFLSKLQFFIMFVGVNMTFFPQHFLGLNGM
		Hypochilus_bernardino                          GAPDMAFPRMNNLSFWLLPPSLVLLLMSSLNEVGVGTGWTIYPPLSGVIAHSGVSVDMAIFSLHLAGASSIMGAINFITTVFNMRLKGVSMEKMPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKLNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGIYLNEYLSKLQFFVMFVGVNMTFFPQHFLGLNGM
		Hypochilus_bonnetti                            GAPDMAFPRMNNLSFWLLPPSLVLLLVSSMVESGVGAGWTIYPPLSSMEGHSGISVDLAIFSLHLAGASSIMGAINFISTILNMRVMGMSMDKVSLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLYGAYFKVDTPLMWCMGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGVYLNEFLSKIQFCVMFIGVNLTFFPQHFLGLNGM
		Hypochilus_sp._South_Fork_Colorado             GAPDMAFPRMNNLSFWLLPPSLILLLVSSMVESGVGAGWTIYPPLSSVEGHSGISVDLAIFSLHLAGASSIMGAINFISTILNMRVVGMSMDKVSLFVWSVLVTAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLHGAYFKIDTPLMWCMGFVFLFTLGGITGVVLANSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGMKLNEFLSKIQFCVMFMGVNLTFFPQHFLGLNGM
		Hypochilus_jemez                               GAPDMAFPRMNNLSFWLLPPSLILLLISSMVESGVGAGWTIYPPLSGMEGHSGISVDLAIFSLHLAGASSIMGAINFISTIFNMRVAGMNMDKVSLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLHGAYFKIDTPLMWCMGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGVYLNDFLSKIQFCVMFIGVNLTFFPQHFLGLNGM
		Sphodros_abbotti                               GAPDMAFPRLNNLSFWLLPPSLFFLMLSSFLDVGVGTGWTLYPPLSSLMGQSGVSLDFAIFSLHLAGASSILGAINFISTILNMRSFGMSMDKVPLFVWSVMVTAVLLLLSLPVLAGAITMLLTDRNFNTTFFDPSGGGDPILFQHLFWFFGHPEVYILILPGFGMISHIVSSSVGKREPFGSLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTSATMIIAVPTGIKIFSWMATLYGSYFKLDASILWSIGFIFLFTIGGITGVVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFAIMGGMVYWFPLFFGLVINAKHLVLQFVIMFVGVNLTFFPQHFLGLNGM
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = mtDNA.dros: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;