NEXUS [File created by TreeBASE: 7/26/07 20:58:32] [Matrix accession#: M844] BEGIN TAXA; TITLE M844; DIMENSIONS NTAX=22; TAXLABELS Hypochilus_thorelli_isolate_THOR_3 Hypochilus_thorelli_isolate_THOR_4 Hypochilus_thorelli_isolate_THOR_2 Hypochilus_thorelli_isolate_THOR_1 Hypochilus_pococki_isolate_POCK_3 Hypochilus_pococki_isolate_POCK_1 Hypochilus_pococki_isolate_POCK_2 Hypochilus_pococki_isolate_POCK_4 Hypochilus_sheari_isolate_SHEA_1 Hypochilus_sheari_isolate_SHEA_2 Hypochilus_coylei Hypochilus_gertschi_isolate_GERT_1 Hypochilus_gertschi_isolate_GERT_2 Hypochilus_kastoni_isolate_KAST_2 Hypochilus_kastoni_isolate_KAST_1 Hypochilus_petrunkevitchi_isolate_PETR_2 Hypochilus_petrunkevitchi_isolate_PETR_1 Hypochilus_bernardino Hypochilus_bonnetti Hypochilus_sp._South_Fork_Colorado Hypochilus_jemez Sphodros_abbotti ; END; BEGIN CHARACTERS; TITLE M844; DIMENSIONS NCHAR=349; FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = - ; MATRIX Hypochilus_thorelli_isolate_THOR_3 GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGVIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENLAKLQFFVMFVGVNLTFFPQHFLGLNGM Hypochilus_thorelli_isolate_THOR_4 GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGVIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSL------------------------------------- Hypochilus_thorelli_isolate_THOR_2 GAPDMAFPRMNNLSFWLLPPSLVLLLLSSLNEVGAGTGWTIYPPLSGIIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNESLAKLQFFVMFVGVNLTFFPQHFLGLNGM Hypochilus_thorelli_isolate_THOR_1 GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEVGAGTGWTIYPPLSSVIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGISMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTY----------------------------------------------------------------- Hypochilus_pococki_isolate_POCK_3 --------RMNNLSFWLLPPSLILLLLSSLNETGVGTGWTIYPPLSSAIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSSLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_pococki_isolate_POCK_1 --------RMNNLSFWLLPPSLVLLLLSSLNETGVGTGWTIYPPLSSAIAHAGISVDMAIFSLHLAGASSIMGAINFITTIVNMRVKGVSMEKVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFTLFFGVSLNEKMAKLQFFVMFLGVNLTFFPQHFLGLNGM Hypochilus_pococki_isolate_POCK_2 GAPDMAFPRMNNLSFWLLPPSLILLLVSSLNETGAGTGWTIYPPLSSSIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_pococki_isolate_POCK_4 --------RMNNLSFWLLPPSLILLLLSSLNETGVGTGWTIYPPLSSAIAHAGASVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMESVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGISLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_sheari_isolate_SHEA_1 GAPDMAFPRMNNLSFWLLPPSLVLLLASSLSEMGAGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTILNMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPVLFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_sheari_isolate_SHEA_2 ---------MNNLSFWLLPPSLVLLLASSLSEMGAGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTILNMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPVLFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGMTYWFSLFFGVSLNENMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_coylei GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEAGAGTGWTIYPPLSGAIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMEKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYYKFNSSLLWS----------------------------------------------------------------------------------------------- Hypochilus_gertschi_isolate_GERT_1 ---------MNNLSFWLLPPSLILLLLSSLSEMGVGTGWTIYPPLSSSIAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVSMDKVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFSLFFGVSLNDKMAKLQFYVMFIGVNMTFFPQHFLGLNGM Hypochilus_gertschi_isolate_GERT_2 GAPDMAFPRMNNLSFWLLPPSLILLLLSSLNEMGAGTGWTIYPPLSSSIAHAGVSVDLAIFSLHLAGASSIMGAINFITTIINMRLKGVSMDKVPLFVWSVFITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGAYFKFNSPLLWSMGFIFLFTLGGVTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFSLFFGVSLNEKMAKLQFFVMFIGVNLTFFPQHFLGLNGM Hypochilus_kastoni_isolate_KAST_2 GAPDMAFPRMNNLSFWLLPPSFMLLLMSSLNEIGAGTGWTIYPPLSGGMAHAGVSVDMAIFSLHLAGASSIMGAINFITTIINMRLKGVTMESVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHVISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKFRAPLLWSVGFVFLFTLGGVTGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFYGVNLNERLSKLQFSIMFIGVNMTFFPQHFLGLNGM Hypochilus_kastoni_isolate_KAST_1 GAPDMAFPRMNNLSFWLLPPSLILLLMSSLNEIGAGTGWTIYPPLSGGVAHAGVSVDMAIFSLHLAGASSIMGAINFITTIVNMRIKGVTMESVPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKFSAPLLWSVGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNERLSKLQFSIMFIGVNMTFFPQHFLGLNGM Hypochilus_petrunkevitchi_isolate_PETR_2 GAPDMAFPRMNNLSFWLLPPSLILLLMSSLNEVGVGTGWTIYPPLSSTVAHSGVSVDMAIFSLHLAGASSIMGAINFITTIFNMRLKGVSMEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGVYFKFNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNEYLSKLQFFVMFIGVNMTFFPQHFLGLNGM Hypochilus_petrunkevitchi_isolate_PETR_1 GAPDMAFPRMNNLSFWLLPPSLVLLLMSSLNEVGAGTGWTIYPPLSGVNGHSGVSVDMAIFSLHLAGASSIMGAINFITTIFNMRLKGVSMESVPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGVYFKFNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGVNLNEFLSKLQFFIMFVGVNMTFFPQHFLGLNGM Hypochilus_bernardino GAPDMAFPRMNNLSFWLLPPSLVLLLMSSLNEVGVGTGWTIYPPLSGVIAHSGVSVDMAIFSLHLAGASSIMGAINFITTVFNMRLKGVSMEKMPLFVWSVLITAVLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSAGKREPFGVLGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKIFSWMATLHGSYFKLNTPLLWSVGFIFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFTIMAGITYWFPLFFGIYLNEYLSKLQFFVMFVGVNMTFFPQHFLGLNGM Hypochilus_bonnetti GAPDMAFPRMNNLSFWLLPPSLVLLLVSSMVESGVGAGWTIYPPLSSMEGHSGISVDLAIFSLHLAGASSIMGAINFISTILNMRVMGMSMDKVSLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLYGAYFKVDTPLMWCMGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGVYLNEFLSKIQFCVMFIGVNLTFFPQHFLGLNGM Hypochilus_sp._South_Fork_Colorado GAPDMAFPRMNNLSFWLLPPSLILLLVSSMVESGVGAGWTIYPPLSSVEGHSGISVDLAIFSLHLAGASSIMGAINFISTILNMRVVGMSMDKVSLFVWSVLVTAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLHGAYFKIDTPLMWCMGFVFLFTLGGITGVVLANSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGMKLNEFLSKIQFCVMFMGVNLTFFPQHFLGLNGM Hypochilus_jemez GAPDMAFPRMNNLSFWLLPPSLILLLISSMVESGVGAGWTIYPPLSGMEGHSGISVDLAIFSLHLAGASSIMGAINFISTIFNMRVAGMNMDKVSLFVWSVLITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILFQHLFWFFGHPEVYILILPGFGIVSHIISYSVGKREPFGVMGMIYAMAGIGGMGFVVWAHHMFSVGMDVDTRAYFTAATMVIAVPTGIKVFSWMATLHGAYFKIDTPLMWCMGFVFLFTLGGITGVVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGITYWFPLFFGVYLNDFLSKIQFCVMFIGVNLTFFPQHFLGLNGM Sphodros_abbotti GAPDMAFPRLNNLSFWLLPPSLFFLMLSSFLDVGVGTGWTLYPPLSSLMGQSGVSLDFAIFSLHLAGASSILGAINFISTILNMRSFGMSMDKVPLFVWSVMVTAVLLLLSLPVLAGAITMLLTDRNFNTTFFDPSGGGDPILFQHLFWFFGHPEVYILILPGFGMISHIVSSSVGKREPFGSLGMIYAMVGIGGMGFVVWAHHMFSVGMDVDTRAYFTSATMIIAVPTGIKIFSWMATLYGSYFKLDASILWSIGFIFLFTIGGITGVVLANSSLDVVLHDTYYVVAHFHYVLSMGAVFAIMGGMVYWFPLFFGLVINAKHLVLQFVIMFVGVNLTFFPQHFLGLNGM ; END; BEGIN CODONS; CODESET * UNTITLED = mtDNA.dros: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;