NEXUS
[File created by TreeBASE:  7/26/07  20:58:38]
[Matrix accession#: M861]

BEGIN TAXA;
	TITLE M861;
	DIMENSIONS  NTAX=24;
	TAXLABELS
		Phalacrocorax_chalconotus	Phalacrocorax_punctatus	Phalacrocorax_albiventer	Phalacrocorax_gaimardi	Phalacrocorax_urile	Phalacrocorax_featherstoni	Phalacrocorax_varius	Phalacrocorax_pelagicus	Phalacrocorax_brasilianus	Phalacrocorax_magellanicus	Phalacrocorax_purpurascens	Phalacrocorax_melanoleucos	Phalacrocorax_sulcirostris	Phalacrocorax_capillatus	Phalacrocorax_bougainvillii	Phalacrocorax_aristotelis	Phalacrocorax_auritus	Phalacrocorax_onslowi	Phalacrocorax_capensis	Phalacrocorax_campbelli	Phalacrocorax_penicillatus	Phalacrocorax_carbo	Sula_sula	Morus_serrator
	;
END;

BEGIN CHARACTERS;
	TITLE M861;
	DIMENSIONS NCHAR=1141;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	CHARSTATELABELS
		1 'ATPase 8- (978 of Ramirez etc)', 129 'ATPase 6-', 137 '-ATPase 8', 758 '-ATPase 6', 759 '12S-', 776 '28-', 782 '-28', 792 '28-', 798 '-28', 799 '20-', 802 '-20', 813 '31-', 816 '-31', 823 '31-', 826 '-31', 836 '2-', 839 '-2', 842 'Hickson et al model-', 844 '32-', 854 '-32', 862 '33-', 866 '-33', 869 '34-', 878 '-34', 882 '35-', 885 '-35', 894 '35-', 897 '-35', 906 '36-', 912 '-36', 914 '37-', 916 '-37', 921 '37-', 923 '-37', 924 '38-', 940 '-38', 945 '39-', 950 '-39', 951 '40-', 953 '-40', 957 '40-', 959 '-40', 967 '39-', 972 '-39', 977 '42-', 980 '-42', 983 '42-', 986 '-42', 995 '38-', 1008 '-38', 1013 '36-', 1019 '-36', 1021 '34-', 1031 '-34', 1037 '45-', 1041 '-45', 1045 '45-', 1049 '-45', 1050 potential_indel_site, 1059 potential_indel_site, 1060 '47-', 1065 '-47', 1071 '47-', 1076 '-47', 1079 potential_indel_site, 1088 '33-', 1092 '-33', 1097 '48-', 1104 '-48', 1114 '48-', 1121 '-48', 1132 '32-', 	1141 '-12S'
	;
	MATRIX
		Phalacrocorax_chalconotus         ??TATCCTAYTAACCTCATGACTAACATTTTCACTCCTAATCCAACCAAAACTCCTATCATTCACTACCACCAATCAACCCTCCAACAAAACCGTAACAACCAACAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTCCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGTCTTCCTACTCATAACTAACCTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACCCCAACCCCGCTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTCGACTTACAGCAAAC?TCACAGCAGGCCACCTTCTCATTCAACTAATCTCCACAGCCACAACCGTACTTCTCCCCATCATACCAGCAATCTCAATCCTAACCACATTAATCTTACTA????????????????????????????????????GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCACAATAGTCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGAGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGGGGCACGT
		Phalacrocorax_punctatus           TTCATCCTACTAACCTCATGACTAACATTCTCACTCTTAATCCAACCAAAACTCCTATCATTCACCACTACTAATCCACCCTCAAACAAAACCATAACAACCACCAAAACCAGCCCGTGAACCTGACCATGAACCTAAGCTTCTTCAACCAATTCACAAGCCCATATCTCCTAGGCATCCCCCTAATCCTACTCTCTATGGTACTCCCCGCCCTACTACTCCCCTCACCAGATAACCGATGAATCACCAACCGGCTCTCTACCCTGCAATCGTGACTACTTCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGCCCTCCTACTCATAACCAATTTACTAGGCCTACTCCCCTACACCTTCACCCCAACTACCCAGCTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTTACAGGCTTACGAAACCAACCAACCATCTCACTAGGACATCTCCTACCTGAAGGAACCCCTACACCCCTAATCCCAGCCCTAATTATAATCGAAACCGCTAGCCTACTCATCCGCCCCCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCTACAGCTACAACTGTGCTCCTCCCCATCATACCAACAATCTCAATCCTAACTACACTAATCCTACTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGTCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGAGGACGTGAAACGTCCTCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCTCTTTAAACAGGCCCTGAGGCACGT
		Phalacrocorax_albiventer          TTTATCCTACTAACCTCATGACTAACATTTTCACTCCTAATCCAACCAAAGCTCCTATCATTCACTACCACCAATCAACCCTCCAACAAAACCGTAACAACCAACAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTTCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAATCTTCCTACTCATAACTAACTTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACCCCAACCCCACTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTCGACTCACAGCAAACCTCACAGCAGGGCACCTTCTCATCCAGCTAATCTCCACAGCCACAACCGTACTTCTCCCCATCATACCAGCAGTCTCAATCCTAACCACATTAATCTTACTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCACAATAGTCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGGRGCACGT
		Phalacrocorax_gaimardi            ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGCCCTACTACTTCCCTCACCAAACAACCGATGAATTACCAACCGACTCTCCACCCTCCAATTGTGACTCCTTCACCTCATCACAAAACAACTAATAATGCCTATAAACAAAAAGGGACATAAATGAGCTCTAGTCCTAACATCACTAATAACCCTTCTACTCACAACCAACCTACTCGGCCTACTCCCTTATACATTCACCCCAACTACACAACTATCAATAAACATAGCACTAGCCTTCCCACTCTGACTTGCAACCTTACTCACAGGCTTACGAAACCAACCAACTATCTCACTAGGACATCTCCTACCTGAAGGAACTCCCACCCCACTAATTCCAGCCCTAATCATAATTGAAACCACCAGCCTACTCATTCGCCCTCTCGCGCTGGGCGTCCGACTCACAGCAAATCTCACAGCAGGCCACCTCCTCATCCAACTGATCTCCACAGCCACAACCGTGCTCCTCCCTATCATACCAACAATCTCAATCCTAACTGCATTGATC?TACTA?TACTAACAATCCTAG????????????????????GCCTAGCCCTAAATCTTGACACTTCCCCCACTAAAGTGTCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCAACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAATAACAGTGAGCACAATAGCCCGCTAGCAAGACAGGTCAAGGTATAGCCCATGGGGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGAGATGTGAAACGTCTCCAGAAGGCGGATTTAGCAGTAAAGCAGGACAATAGAGCCCCCTTTAAACCGGCTCTGAGGCACGT
		Phalacrocorax_urile               TTTATCTTACTAACCTCATGACTAACATTTTCTCTCTTAATCCAACCAAAACTTCTATCATTCACCACCACTAACCCACCCTCTAACAAAACTATAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAGTTCACAAGCCCTCACCTCCTAGGTATTCCCCTAATCCTACTCTCTATACTACTCCCCGCCCTACTATTCCCCTCACCAGACAGCCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCATCTTATCACAAAACAACTAATAATACCCCTAAACAAAAAGGGGCATAAATGAGCCCTAATCCTAACATCACTAATAGCCTTCCTACTCGTAACCAACTTACTAGGCTTACTCCCCTATACCTTTATCCCAACTACCCAATTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCCTACTTATAGGCCTACGAAACCAACCAACCATCTCACTAGGACACCTCCTACCTGAAGGAACCCCCACCCCTCTAATCCCAGCCTTAATTATAATCGAAACTACTAGCCTACTCATTCGCCCCCTTGCACTCGGTGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCTACAACTGTGTTACTGCCAATCATACCCGCAGTCTCAATCCTAACTACATTAATCTTACTACTATTAACAATCGTAGAAGTAGCAGTAGC???????GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGTCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAATAATAGTGAGCACAATAGCCCGCTAGTAAGACAGGTCAAGGTATAGCTCATGGGACGGAAGAAATGGGCTACATTTTCTGAAACAGAAAATACGAAAGAGGATGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACTGGCCCTGAGGCACGT
		Phalacrocorax_featherstoni        ??????????????????????????ATTCTCACTCTTAATCCAACCAAAACTCCTATCATTCACCACTACTAATCCACCCTCAAACAAAACCATAACAACCACCAAAACCAGCCCGTGAACCTGACCATGAACCTAA?CTTCTTCAACCAATTCACAAGCCCATATCTCCTA?GCATCCCCCTAATCCTACTCTCTATGGTACTCCCCGCCCTACTACTCCCCTCACCAGATAACCGATGAATCACCAACCGGCTCTCTACCCTGCAATCGTGACTACTTCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGCCCTCCTACTCATAACCAATTTACTAGGCCTACTCCCCTACACCTTCACCCCAACTACCCAGCTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTTACAGGCTTACGAAACCAACCAACCATCTCACTAGGACATCTCCTACCTGAAGGAACCCCTACACCCCTAATCCCAGCCCTAATTATAATCGAAACCGCTAGCCTACTCATCCGCCCCCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCTACAGCTACAACTGTGCTCCTCCCCATCATACCAACAATCTCAATCCTAACTACACTAATCCTASTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAAYTYTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGTCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGAGGACGTGAAACGTCCTCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCTCTTTAAACAGGCCCTGAGGCACGT
		Phalacrocorax_varius              TTCATCCTACTAACCTCATGACTAACATTTTCACTCTTAATCCAACCAAAACTCCTATCATTCACCACCACTAACCCACCCTCCAACAAAACCATAACAACCACCAAAAACAACCCATGAACCTGACCATGAACTTAAGCTTCTTCGACCAATTCACAAGCCCATACTTCCTAGGCATTCCTCTAATCCTACTCTCTATACTACTCCCCGCCCTACTACTACCTACACCAGATAACCGATGAGTCACCAACCGACTCTCTACCCTACAATCGTGACTACTTCATCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGSATAAATGGGCCCTAATTCTAACATCATTAATAGCCCTCCTACTCATAACCAACCTGCTAGGCCTACTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTTCCACTCTGACTTGCAACCTTACTTACAGGTCTACGAAACCAACCAACTATCTCACTAGGACATCTCCTGCCTGAAGGAACTCCCACTCCCCTAATCCCAGCCGTAATTATAATCGAAACTACTAGCCTACTTATCCGCCCCCTTGCACTAGGCGTCCGACTCACAGCAAACGTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCCACAACTGTACTCCTCCCCATCATACCAACAATCTCAATCCTAAGTACACTGATCCTCCTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGGGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGAGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACAGGCCCTGAGGCACGT
		Phalacrocorax_pelagicus           TTTATCCTACTAACCTCATGACTAACATTTTCTCTATTAATCCAACCAAAACTTCTATCATTCACCACCACTAACCCACCCTCTAACAAAACTACAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAGTTCACAAGCCCTCACCTCCTAGGSATTCCCCTAATCCTACTCTCTATACTACTCCCCGCCCTACTACTCCCCTCACCAGACAACCGATGAATCACCAACCGACTCTCCACTCTCCAATCATGATTACTCCATCTTATCACAAAACAACTAATAATACCCCTAAACAAAAAGGGACATAAATGAGCCCTAATCCTAACATCACTAATAGCCCTCCTACTCATAACCAACTTACTAGGCTTACTCCCCTATACCTTTACCCCAACTACCCAACTATCAATAAATATAGCACTAGCATTCCCACTCTGACTTGCAACCCTACTTACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTACCTGAAGGGACCCCCACCCCTCTAATCCCAGCCTTAATTATAATCGAAACTACTAGCCTGCTCATTCGCCCCCTTGCACTCGGTGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCCACAACTGTACTACTGCCAATCATACCAGCAGT?TCAAT?TTAACCACATTAATCTTACTACTATTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGTCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAATAATAGTGAGCACAATAGCCCGCTAGTAAGACAGGTCAAGGTATAGCTCATGAGACGGAAGAAATGGGCTACATTTTCTGAAACAGAAAATACGAAAGAGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACTGGCCCTGAGGCACGT
		Phalacrocorax_brasilianus         TTCATCCTACTAACCTCATGACTAACATTTTCACTCCTAATCCAACCAAAACTCCTATCGTTCRCCACCACTAATYCACCATCCAACAAAACCATAACAACCAACAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATTCTACTCTCTATACTAATTCCTGCCCTACTACTTCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGAGCTTTAATCCTAACATCACTAATAGTCTTCCTACTGATAACAAACTTACTAGGCCTACTCCCCTATACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCCTCCTCACAGGCCTACGAAACCAACCAACCATCTCACTGGGACACCTCCTGCCCGAAGGGACCCCCACCCCACTAATCCCAGCCCTAATTATAATTGAAACCACCAGCCTGCTCATCCGTCCTCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGTCACCTCCTCATCCAACTAATCTCCACGGCCACAACCGTGCTCCTCCCCATCATACCAGCAAT?TCAATCCTAACCACATTAATCCTACTACTATTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAATAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTTTCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCTCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_magellanicus        TTTATCCTACTAACCTCATGACTAACATTTTCACTCCTAATCCAACCAAAACTCCTATCATTCACCACCACTAATCAACCCTCCAACAAAACCGTAACAACCAATAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATCCTACTCTCTATACTACTTCCCACCCTATTACTTCCCTCACCAGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGCCTTCCTACTCATAACTAACTTACTAGGCCTACTCCCTTATACCTTCACTCCAACCACCCAACTATCAATAAACATAGCACTAGCATTTCCACTCTGACTTGCAACTTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGGACCCCAACCCTACTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTTGCACTTGGTGTTCGACTCACAGCAAACCTCACAGCAGGTCACCTTCTCATCCAACTAATCTCCACAGCTACAACCGTACTTCTCCCCATCATACCAGCAGTCTCAATCCTAACCGCATTAATCTTACTACTATTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTTATGGGACGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAGCGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_purpurascens        ???????????????????GACTAACATTTTCACTCCTAATCCAA?CAAAGCTCCTATCATTCACTACCACCAATCAACCCTCCAACAAAACCGTAACAACCAACAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTTCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGTCTTCCTACTCATAACTAACTTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGGCATCTCCTGCCTGAAGGAACCCCAACCCCACTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTCGACTCACAGCAAACCTCACAGCAGGCCACCTTCTCATCCAACTAATCTCCACAGCCACAACCGTACTTCTCCCCATCATACCAGCAGTCTCAATCCTAACCACATTAATCTTACTACTACTAACAATCCTAGAAGTAGCAGTAGCCAT????GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCACAATAGTCCGCTAACAAGACAGGTCAAGGTATAGCCCATGGGGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGGGGCACGT
		Phalacrocorax_melanoleucos        ???????????????????????AACATTCCTACTCTTAATTCAACCAAAACTCCTATCATTCACATCCACCAACACACCCTCCAACAAAACCATAACATCCACCAACACTAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTTACAAGCCCGTGCCTCCTAGGAGTGCCCCTAATCCTACTCTCCATACTACTCCCTGCCCTACTACTCCCTTCACCAAATAACCGTTGAATTACCAACCGACTTTCCACTCTCCAATCATGACTCCTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGACATAAATGAGCCCTAATCCTAACATCACTAATAGCCCTCCTACTTATAACTAATCTACTTGGCCTACTCCCATACACCTTCACCCCAACTACCCAACTATCAATAAATATAGCACTAGCATTCCCACTCTGACTCGCAACATTACTTACAGGCCTACGAAATCAACCAACTGCGTCACTAGGCCACCTACTCCCCGAAGGAACTCCCACCCCGCTAATCCCAGCCCTAATCATAATCGAAACAACTAGCCTACTCATCCGTCCCATTGCGCTAGGTGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTTATCCAACTAATCTCCACAGCCACAATCGCACTCCTTCCTATCATACCAACAATYTCAATCTTAACCGCACTAATCTTACTACTACTGACACTCCTAGAAGTAGCAGTCGCCATAATCGCCTAGCCATAAATCTTGGCACTTCCCCTACCAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATCCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGTCCACCTTTGAGAGGGTAACAGTGAACACAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCCTATGGGGTGGAAGAAATGGGCTACATTTTCTGGAGCAGAAAACACGAAAGGGGATGTGAAACATCCCCTAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_sulcirostris        TTCATCCTACTA?CCTCATGACTAACATTTTCATTCTTAATCCAACCAAAACTCCTATCATTCACTACCACCAACCCACCCTCCAACAAAACCATAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCATACCTCCTASGCATTCCCCTAATTCTACTCTCTATACTACTCCCCGCCCTACTACTACCTGCACCAGATAACCGATGAATCACCAACCGACTCTCTACCTTACAATCATGACTACTTCACCTAATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCCCTAATCCTAACATCATTAATAGCCCTCCTACTCATAACCAACCTACTAGGCCTACTCCCCTATACTTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCCTACTTACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACTCCCACTCCCCTAATCCCAGCTTTAATTATAATCGAAACTACTAGCCTACTCATCCGCCCACTTGCACTTGGCGTACGACTCACAGCAAACCTCACAGCAGGTCACCTCCTCATCCAACTAATCTCTACAGCCACAACTGTACTCCTCCCCATCATACCAACAATCTCAATCCTAACTACACTGATCCTACTACTACTAACAATCCTAGAAGTAGCAGTAGCCAT????GCCTAGCCCTAAATCTTGGCACTTACCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACAGGCCCTGAGGCACGT
		Phalacrocorax_capillatus          ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATACTACTCCCCGCCCTACTACTCCCCTCACCAGACAACCGATGAGTTACCAACCGATTCTCTACCCTACAATCATGACTACTCCACCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGAGCCCTAATCCTGACATCATTAATAGCTCTCCTACTCATAACCAACCTACTAGGCTTACTCCCCTATACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTATGACTTGCAACTTTACTTACAGGCCTACGAAACCAACCAACCATCTCACTAGGACACCTCCTGCCCGAAGGGACCCCCACCCCCCTAATCCCGGCCCTAATTATAATCGAAACTACCAGCCTACTTATCCGCCCCCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCTACAACCGTACTCCTCCCCATCATGCCAACAGTCTCAATCCTAACTACATTAATCCTACTACTATTGACAATCCTAGAGGTAGCAGTAGCCATA???GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCGCAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAATAAGACAGGTCAAGGTATAGCTCATGGAGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_bougainvillii       ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TAATCCTACTCTCCATACTACTTCCCGCCCTACTACTCCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGTCTTCCTACTCATAACTAACTTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACCCAGCTATCAATAAACATAGCACTAGCATTCCCACTATGACTTGCAACTTTACTCACAGGTCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACCCCAACCCCACTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTYGACTCACAGCAAACCTCACAGCAGGCCACCTT?TCATCCAACTAATCTCCACAGCCACAACCGTACTT?TCCCCATCATACCAGCAGT?TCAATCCTAACCACATTAATCTTA?TA?TACTAACAATCCTAG????????????????????GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAA?CCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCACAATAGTCCACTAACAAGACAGGTCAAGGTATAGCTCATGGGATGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGTGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_aristotelis         TTTATCATACTGATCTCATGACTAACATTTTCACTCCTAATTCAACCAAAACTACTATCCTTCACCACCACCAACCCACCCTCCAACAAAGCCATAACAATCGCCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACTTCCTAGGCATTCCCCTAATCCTACTCTCCATACTACTCCCTGCCTTACTACTCCCTTCACCAGACAACCGATGAATCACCAACCGACTCTCAACCCTACAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGACATAAATGGGCTCTAATCCTAACATCCCTAATGGTCTTCCTACTCATAACCAACTTACTAGGCCTCCTCCCCTATACCTTCACCCCAACTACCCAATTATCAATAAATATGGCACTAGCATTCCCACTCTGACTCGCAACTCTACTCACAGGCCTACGAAACCAACCAACTATCTCACTAGGACACCTCTTGCCCGAAGGAACCCCAACCCCCTTAATCCCAGCCCTAATTATAATTGAAACTGCCAGCCTGCTCATCCGCCCTCTCGCACTTGGCGTCCGACTCACAGCAAATCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCTACAACTGTGCTCCTCCCCATCATACCAGCAATCTCAATCCTAACCACGTCAATCCTACTG?TGCT?ACAATCG???????????????????????GCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAAAAATAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAATACGAAAGAGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGGGCCCCCTTTAAACTGGCCCTGGGGCACGT
		Phalacrocorax_auritus             TTCATCCTACTAGCCTCATGACTAACATTTTCACTCCTAATCCAACCAAAACTCCTATCATTCACCACCACTAATCCACCATCCAACAAAACCATAACAACCAACAAAAACAACCCATGAACCTGACCATGAACTTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCTCTAATTCTACTCTCTATACTAATTCCCGCCCTACTACTTCCCTCGCCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTCATCACAAAACAACTAATAATACCCCTAAACAAAAAAGGGCATAAATGAGCTCTAATCCTAACATCACTAATAATCTTCCTACTTATAACAAACTTACTAGGCCTACTCCCCTATACCTTCACCCCAACTACCCAGCTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCCTGCTCACAGGCCTACGAAACCAACCAACCATCTCACTGGGACACCTCCTGCCCGAAGGGACCCCCACCCCACTAATCCCGGCCCTAATTATAATTGAAACCACTAGCCTGCTCATCCGTCCTCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGTCACCTCCTCATCCAACTAATCTCCACGGCCACAACCGTACTCCTCCCCATCATACCAGCAATTTCAATCCTAACCACATTAATCCTACTACTATTAACAATCGTAGAAGTAGCAGTAGCTATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCCACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCCCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_onslowi             ?????CCTACTAACCTCATGACTAAYATTTTCACTCCTAATCCAACCAAAACTCCTATCATTCACTACCACCAATCAACCCTCCAACAAAAYCGTAACAACCAACAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTA?GCATCCCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTCCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGTCTTCCTACTCATAACTAACCTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACCCCAACCCCGCTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTCGACTTACAGCAAACCTCACAGCAGGCCACCTTCTCATTCAACTAATCTCCACAGCCACAACCGTACTTCTCCCCATCATACCAGCAATCTCAATCCTAACCACATTAATCTTACTACTACTAACAATCGTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAAYTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCACAATAGTCCGCTAACAAGACAGGTCAAGGTATAGCTCATGGAGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGGGGCACGT
		Phalacrocorax_capensis            ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTCCCCTCACCAGACAACCGATGAGTTACCAACCGACTCTCTACCTTACAATCGTGACTACTCCACCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTCTAATCCTAACATCATTAATAGCCTTCCTACTCATAACCAACTTACTAGGCCTACTCCCCTATACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTATGACTTGCAACTTTACTTACAGGTATACGAAACCAACCAACCATCTCACTAGGGCACCTCCTACCTGAAGGGACTCCCACCCCCCTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTGCTCATTCGCCCCCTTGCACTCGGTGTCCGACTCACAGCAAACCTCACAGCAGGCCATCTCCTCATCCAATTAATCTCCACAGCTACAACTGTGCTCCTCCCCATCATACCAACAATCTCAATCCTAACTACACTAATCCTAATACTTTTGACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCTTCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAACAAGACAGGTCAAGGTATAGCCCATGGAGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGRGCCCCCTTTAAACTGGCCCTGAGGCACGT
		Phalacrocorax_campbelli           TTTATCCTACTAACCTCATGACTAACATTTTCACTCCTAATCCAACCAAAACTCCTATCATTCACTAC?ACCAATCAACCCTCCAACAAAACCGTAACAACCAACAAAAATAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCACACCTCCTAGGCATCCCCCTAATCCTACTCTCCATACTACTTCCCGCCCTACTACTCCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGACTACTCCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGGGCTTTAATCCTAACATCATTAATAGTCTTCCTACTCATAACTAACCTACTAGGTCTACTCCCTTACACCTTCACCCCAACTACTCAACTATCAATAAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTCACAGGCCTACGAAACCAACCAACCATCTCACTAGGACATCTCCTGCCTGAAGGAACCCCAACCCCACTAATCCCAGCCCTAATTATAATTGAAACTACCAGCCTACTCATCCGCCCTCTCGCACTTGGCGTTCGACTAACAGCAAACCTCACAGCAGGCCACCTTCTCATCCAACTAATCTCCACAGCCACAACCGTACTTCTCCCCATCATACCAACAATCTCAATCCTAACCRCATTAATCTTACTACTACTAACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGTCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCACCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGGACAACAGTGAGCACAATAGTCCACTAACAAGACAGGTCAAGGTATAGCTCATGGGGTGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGAACGTGAAACGTCCCCAAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGGGGCACGT
		Phalacrocorax_penicillatus        ???ATCTTACTAACCTCATGACTAACATTTTCTCTCTTAATACAACCAAAACTCCTATCATTCACCACCACTAATCCCCCCTCTAACAAAACCATAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCCCACCTCCTAGGTATTCCCCTAATCCTACTCTCTATACTACTCCCTGCCCTACTACTCCCCTCACCGGACAACCGATGAATCACCAACCGACTCTCCACCCTCCAATCATGATTACTTCACCTTATCACAAAACAACTAATAATGCCCCTAAACAAAAAAGGACATAAATGAGCCCTAATCCTAACATCATTAATAGCTTTCCTACTCATAACCAACTTACTAGGCTTACTCCCTTATACCTTTACCCCAACTACCCAACTATCAATGAACATAGCACTAGCATTCCCACTCTGACTTGCAACCTTACTTACGGGCCTACGAAACCAACCAACTATCTCACTAGGACATCTCCTACCTGAAGGAACTCCCACCCCCCTAATCCCAGCCTTAATTATAATCGAAACTACTAGCCTACTCATCCGCCCCCTTGCACTCGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTAATCCAATTAATCTCCACAGCCACAACTGTACTACTCCCTATCATACCAACAATCTCAATCCTAACCACATTAATCCTACTACTATTGACAATCCTAGAAGTAGCAGTAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGTCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAGCAACAGTGAGCGCAATAGCTCGCTAGCAAGACAGGTCGAGGTATAGCCCATGGGGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAATACGAAAGGGGGCGTGAAACGCCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Phalacrocorax_carbo               TTCATCCTACTAGCCTCATGACTAACATTCTCATTCTTAATCCAACCAAAACTCCTATCATTCACTACCACCAACCCACCCTCCAACAAAACCATAACAATCACCAAAAACAACCCATGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCACAAGCCCATAYCTCCTAGGCATTCCCCTAATYCTACTCTCTATACTACTCCCCGCCCTACTACTCCCCTCACCAGACAACCGATGAGTTACCAACCGATTCTCTACCCTACAATCATGACTACTCCACCTCATCACAAAACAACTAATAATGCCCCTAAACAAAAAGGGGCATAAATGAGCCCTAATCCTGACATCATTAATAGCTCTCCTACTCATAACCAACCTACTAGGCTTACTCCCCTATACCTTCACCCCAACTACCCAACTATCAATAAACATAGCACTAGCATTCCCACTATGACTTGCAACTTTACTTACAGGCCTACGAAACCAACCAACCATCTCACTAGGACACCTCCTGCCCGAAGGGACCCCCACCCCCCTAATCCCGGCCCTAATTATAATCGAAACTACCAGCCTACTTATCCGCCCCCTTGCACTTGGCGTCCGACTCACAGCAAACCTCACAGCAGGCCACCTCCTCATCCAACTAATCTCCACAGCTACAACCGTACTCCTCCCCATCATGCCAACAGTCTCAATCCTAACTACATTAATCCTACTACTATTGACAATCCTGGAGGTAGCAGKAGCCATAATCGCCTAGCCCTAAATCTTGGCACTTCCCCTACTAAAGTGCCCGCCCGAGAACTACGAGCGCAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATTCACCCGACCGCCCCTTGCCAAAACAGCCTACATACCGCCGTCGTCAGCCCACCTTTGAAAGAACAACAGTGAGCGCAATAGCCCGCTAATAAGACAGGTCAAGGTATAGCTCATGGAGCGGAAGAAATGGGCTACATTTTCTGAAACAGAAAACACGAAAGGGGACGTGAAACGTCCCCGAAAGGCGGATTTAGCAGTAAAGCGGGACAATAGAGCCCCCTTTAAACCGGCCCTGAGGCACGT
		Sula_sula                         ?TCATCCTAACCCTATCATGACTAACMTTCTCACTTATAATCCARYCTAAACTTCTATCATTTTTATCCATTAACTCCCCCTCCAACAAAATCACCACAACTACCAAAACCACTTCCTGAACCTGACCATGAACCTAAGCTTCTTTGATCAATTCGCAAGCCCATGCTTCCTAGGAATTCCACTAATCCTAATCTCAATACTATTCCCCGCCCTACTATTCCCCACACCAGACAACCGATGAATCACCAACCGACTCTCTACCCTCCAATCATGATTCCTCTATCTCATCACTAAACAGCTACTAATCCCCCTAAACAAAAACGGACACAAATGAGCCTTAATCCTAACATCACTAATAACCATACTACTAACAATTAACCTTCTAGGACTACTCCCTTACACATTTACTCCTACCACCCAACTATCAATAAATATAGCACTAGCATTTCCCCTCTGACTCGCCACACTACTCACAGGCCTACGAAATCAACCATCAACCTCCCTAGGACATCTACTCCCTGAAGGCACTCCAACACCACTAATCCCAGCCCTAATTYTAATTGAAACCACTAGCCTCCTCATCCGACCACTAGCCCTAGGCGTCCGCCTTACAGCTAACCTCACAGCAGGTCACCTACTCATCCAACTAATCTCCACAGCCTCTGCTACCCTGCTCCCAATCGTCCCAACCGTATCCATCTTAACCACACTAATCCTGCTCTTACTGACTATTCTAGAAGTAGCAGTAGCCATAATTGCCTAGCCCTAAATCTTGGCACTTACACTACTAAAGTGCCCGCCCGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGTCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAACCCACGATACACCCAACCGTCCCTTGCCAGAGCAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAAAGAGCAACAGTGAGCATAATAGTTCACTAGTAAGACAGGTCAAGGTATAGCTTATGGGRCGGAAGAAATGGGCTACATTTTCTAAACTAGAAGACACGGAAAGGGGTGTGCAACCCCCCTAGAAGGCGGATTTAGTAGTAAAGCGGGACCATAGAGCCCCCTTTAAACCGGCCCTGGGATACGT
		Morus_serrator                    CTCATCTTATTAATATCATGACTAACATTCGCTCTTATAATCCAACCTAAACTTCTACCATTCAYCRCCACCAACTCCCCCTCCAACAAAACTCCTTCACCCACTAAAACCACCCCTTGAAYCTGACCATGAACTTAAGCTTCTTTGACCAATTCACAAGCCCATGCTTMCTAGGAATTCCACTAATCTTACTCTCAATACTATTTCCTACCCTACTACTYCCCACGCCAAGCAACCGATGAATCACTAATCGACTCTCTACTCTCCAATCATGATTCTTTCACCTCATCACAAAACAACTAATAATCCCTCTAAACAAAAAAGGCCACAAATGAGCCCTAATCCTAACATCACTAATAATTATACTACTAATAATCAATCTACTAGGCCTTCTCCCCTACACATTTACCCCTACCACCCAACTATCAATAAACATAGCACTAGCATTCCCGCTCTGACTAGCCACACTGCTCACAGGCCTGCGAAACCAACCATCAATCTCCCTAGGACATCTACTACCTGAAGGTACTCCAACACCACTAATCCCAGCCCTAATTATAATCGAAACTACTAGCCTTCTCATCCGACCATTAGCCCTAGCTGTACGCCTCACAGCAAACCTTACAGCAGGTCACTTGCTCATCCAACTAATTTCCACAGCCTCCATTGCCCTCCTTCCAATCATACCAACAGTATCTATCCTAACCACAYTAATCCTWCTYTTATTAACCATCCTGGAAGTGGCAGTAGCAATAATCGCCTAGCCTTAAATCTTGGCACTTACCATACTAAAGTACCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCTCTAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATGCACCCGACCACCCCTTGCCAGTACAGCCTACATACCGCCGTCGTCAGCTCACCTCTGAGAGTGTAGTAGTGAGCACAATAGCCCGCTAGTAAGACAGGTCAAGGTATAGCCCATGGGGTGGGAGAAATGGGCTACATTTTCTAAGATAGAAAAGACGAAAGGGGGTGTGCAACATCCCTAGAAGGCGGATTTAGTAGTAAAGCGGGACCATAGAGCCCCCTTTAAACCGGCCCTGGAGCACGT
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = mtDNA.mam.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
USERTYPE Tvs_weighted_7_to_1 STEPMATRIX = 4 
 A C G T 
 . 7 1 7 
 7 . 7 1 
 1 7 . 7 
 7 1 7 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 TYPESET user_7_to_1 = Tvs_weighted_7_to_1: 1 - 1141 ; 
 END;