NEXUS
[File created by TreeBASE:  7/26/07  20:58:49]
[Matrix accession#: M883]

BEGIN TAXA;
	TITLE M883;
	DIMENSIONS  NTAX=24;
	TAXLABELS
		Plexaura_kuna_in_hospite_Niantupo_Panama	Plexaura_kuna_in_hospite_North_Bocas_Panama_colony_1	Plexaura_kuna_in_hospite_North_Bocas_Panama_colony_3	Plexaura_kuna_in_hospite_South_Bocas_Panama_colony_2	Plexaura_kuna_in_hospite_South_Bocas_Panama_colony_7	Plexaura_kuna_in_hospite_Bache_FL	Plexaura_kuna_in_hospite_12_Ft_Mound_FL	Plexaura_kuna_in_hospite_St_Croix_US_Virgin_Islands	'Plexaura kuna culture #13 FL'	Briareum_asbestinum_in_hospite_FL	Plexaura_kuna_in_hospite_San_Blas_Panama	'Plexaura kuna culture #706 San Blas Panama'	Pseudoterogorgia_elisabethae_in_hospite_Bahamas	Plexaura_flexuosa_in_hospite_Tennessee_Reef_FL	Gorgonia_sp_in_hospite_12_Ft_Mound_FL	Plexaura_homomalla_in_hospite_San_Blas_Panama	Pseudoterogorgia_elisabethae_culture_Bahamas	Plexaura_kuna_in_hospite_Bahamas	'Plexaura kuna culture #704 San Blas Panama'	Eunicea_sp_in_hospite_12_Ft_Mound_FL	Plexaura_flexuosa_culture_Tennessee_Reef_FL	'Plexaura kuna culture #702 San Blas Panama'	Symbiodinium_kawagutii	Pseudoterogorgia_americana_in_hospite_FL
	;
END;

BEGIN CHARACTERS;
	TITLE M883;
	DIMENSIONS NCHAR=691;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Plexaura_kuna_in_hospite_Niantupo_Panama                   GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAG
		Plexaura_kuna_in_hospite_North_Bocas_Panama_colony_1       GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTCGGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGGGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_North_Bocas_Panama_colony_3       GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCGCCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_South_Bocas_Panama_colony_2       GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_South_Bocas_Panama_colony_7       GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGGC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGAAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_Bache_FL                          GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_12_Ft_Mound_FL                    GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_St_Croix_US_Virgin_Islands        GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		'Plexaura kuna culture #13 FL'                             GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Briareum_asbestinum_in_hospite_FL                          GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTTGACACTGTG-ACTTTTGACGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGCGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCGGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAATTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGT----CTACACTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCGTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTAGCTTGCATCGTA----CAGCTCAAGCGCGCAGCTGTTGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_San_Blas_Panama                   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCCTCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTNNNNNNNNNNNNNNNNNNNNN
		'Plexaura kuna culture #706 San Blas Panama'               GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGCGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-GGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Pseudoterogorgia_elisabethae_in_hospite_Bahamas            GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_flexuosa_in_hospite_Tennessee_Reef_FL             GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATC----ACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Gorgonia_sp_in_hospite_12_Ft_Mound_FL                      GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGC-CGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAG-TTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_homomalla_in_hospite_San_Blas_Panama              GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCCTCTGGCACCAGGCGGGCCTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTTGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGG-CGCAGCGAAGCGCGA-TAGTCTTTCTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Pseudoterogorgia_elisabethae_culture_Bahamas               GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_kuna_in_hospite_Bahamas                           GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		'Plexaura kuna culture #704 San Blas Panama'               GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGAGGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGTATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Eunicea_sp_in_hospite_12_Ft_Mound_FL                       GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAG-TGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCACGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Plexaura_flexuosa_culture_Tennessee_Reef_FL                GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGCGACAGCGGTGCATCGGCGCCTGGT---GCATCTGGCACCGGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGT----CTACACTGCTGCTTTGCTTTCCAACAAGTCATCGATCGCGTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTAGCTTGCATCGTA----CAGCTCAAGCGCGCAGCTGTTGGG-ATGCTGATGCATGCCCTTAGCATGAA
		'Plexaura kuna culture #702 San Blas Panama'               GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACATTGTG-ACTTTTGACGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCGGGCGCGGGTGTTGCCCTGTGGCC--GGGTTGAGCTCTAGGG-----TGAGATAGTCA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCAGCGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTCTGCTTGCAAGCAGCATGTA----TACACTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCGTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTAGCTTGCATCGTACGTACAGCTCAAGCGCGCAGCTGTTGGG-ATGCTGATGCATGCCCTTAGCATGAA
		Symbiodinium_kawagutii                                     GCGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGATTCAACTCTGACCAT-GTGAACTTTGGTTGTGAGGGATGCTTGCGGTGAGATATCTGCTTGCTGAACTCGTGGGCGACAGAGGCACATCGGCAGCCAGCAGCGCATCTGC--CCTGGCGCTGGTGTCGCCCTGTGGTCAAGGGTC-CACTGTGTGGGCCGTTGCTATAGTAATGAGATTTTTGTGCAAGCTGTCTGACAAGGACATTGGTCCAAATTCCACAACTTTCAGTGATGGATGTCTTGGCTCAAGCACCTGTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCAATGGCCGCCTGAACGTACGTTGCACTCTTGGGATTTCCTGAGAGTATGTCTGCTTCAGTGCTTAGC-----TTGCCCAATCTTGCGGATAGATTTTGTTTCTGTCTTGCGCCCCTGTGAGCCATTGAAACTCTAGTCAA---TGGCTTATTGAATGAGTTGGTC-TTGCAAAAGCTTTGCGCGATGCTATTCAAGATTCCCCCTTGAAATGGCATTTCTTGAGTGACG----CTGCTTATGCTTGCAACTGCTGGG-ATGCTAGCGCATGCCTCTAGCATGAA
		Pseudoterogorgia_americana_in_hospite_FL                   GTGTTGGAAAGTTTCATGAACCTTATCACTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTCGCACTGAT-CAACTCTCGACACTGTG-ACTTTTGATGTGAGGGACGCTTGTGGTGAAATATCTGCTTGCGGAACTCGTGGGTGACAGCGGCGCATCGGCGCCTGGT---GCATCTGGCACCAGGCGCGGGTGTTGCCCTGTGGCC--GGGTT-AGCTCTAGGG-----TGAGATAGTTA----------GCGCAAGCTTTCTGGAAAGGATGATGGTCCAAAA-CTACAACTTTCAGTGATGGATATCTTGGCTCGGGCACCTTTGAAGGGCGCA-CGAAGCGCGA-TAGTCTTTGTGAATTGCAGAACTCCGTGAACCGATGGCCTCCTGAACGCGCATTGCGCTCTCGGGATTTCCTGAGAGCAGGTCTGCTTCAGTGCTTAGCATTATCTACCTGTGCTTGCAAGCAGCATGTATGTCTGCATTGCTGCTTCGCTTTCCAACAAGTCATCGATCGCTTTTGTGTTCGTAAATGGCTTGTTTGCTGCCTGGCCCATGCGCCAAGCTTGAGCGTACTGTTGTTCCAA---GCTTTGCTTGCATCGTG----CAGCTCAAGCGCGCAGCTGTCGGG-ATGCTGATGCATGCCCTTAGCATGAA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 691 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS GAPMODE = NEWSTATE ; 
 WTSET * weigh_gaps_by_length REAL = 1.00: 1 - 202 207 - 504 510 - 691 , 0.25: 203 - 206 , 0.20: 505 - 509 ; 
 END;