NEXUS [File created by TreeBASE: 7/26/07 20:59:18] [Matrix accession#: M991] BEGIN TAXA; TITLE M991; DIMENSIONS NTAX=24; TAXLABELS Quercus_acutissima Quercus_alba Lithocarpus_densiflorus Chrysolepis_chrysophylla Lithocarpus_lucidus Lithocarpus_echinifer Lithocarpus_rotundatus Lithocarpus_blumeanus Lithocarpus_havilandii Lithocarpus_bennettii Lithocarpus_enclesiacarpus Lithocarpus_conocarpus Lithocarpus_luteus Lithocarpus_ruminatus Lithocarpus_revolutus Lithocarpus_lampadarius Lithocarpus_turbinatus Lithocarpus_beccarianus Lithocarpus_kalkmanii Lithocarpus_palungensis Lithocarpus_pulcher Lithocarpus_sericobalanus Lithocarpus_keningauensis Lithocarpus_clementianus ; END; BEGIN CHARACTERS; TITLE M991; DIMENSIONS NCHAR=991; FORMAT SYMBOLS = " 0 1 A G C T 2 " MISSING = ? GAP = - ; MATRIX Quercus_acutissima TCGAAACCTGCACAGCAGAACGACCCGCGAATTGGTTACAACCGACGGGGGG-C-GGGGGGCGCTCGTCGCCCCCTCG---CCCCCCCTGCGGGCGGGGAGAC-CT-------------GCCT-GCAAACCGAACCCCAGCGCGGAACGCGCCAAGGAAATCTAA-CCAAGAGA-GCCACGCTGGAGGCCCCGGACACGGTGTGCCCCCGACGTCGGCGCTTT-ACGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCTGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCC----AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGTGCCTGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTCTTGCCCTCGTTCCTCGTCGTGCGCGCCCC-GTCGCCCGAACGCGCTC-CTC-GACCCTC---ACGCGTCGTCGCCTCGGCGGCG---CTC-----CCAACGCGACCCC0210000000000000000110000000000000000000000000000000000000000010110000000000000000000000000000000000000000010110000000000000000000000000000000000000000000110000000000000000000000000000000000000000000110000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000001100000000000000000000000000000000000000001 Quercus_alba TCGAAACCTGCCCAGCAGAACGACCCGCGAATTGGTTACAACCGACGGGGGG-C-GGGGGGCGTTCGTCGCCCCCTCG--CCCCCTCCTGCGGGGGGGG--AC-CTCGCGTC-TCCT--GCCC-GCAGACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCTAA-CCAAGAGA-GCCATGTCGGAGGCCCCGGACACGGTGTGCCCCCGGCGTCGGCGTCTT-ATGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCCC---AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGTGCCTGCACG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTTTTACCCTCGTTCCTCGTCGTGCGTGCCCC-GTCGCCCGAACGCGCTCCTGC-GACCCTC---ACGCGTCGCC---TCGGTGGCG---CTC-----CCAACGC------0000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000000 Lithocarpus_densiflorus TCGAAACCTGCACAGCAGAACGACCCGCGAACTGGTTACAACCGACGGGAGG--GGGGGGGCGCTCGTCGAGTGCTCG----CCCCCCTGCGGGC------------------TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGCCTT-ACGAATTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCC---GAA-CTCCGG-TTCGGG-CGGGGGCGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAATGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTTTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GTCGCCCGAACGCGCTCCTCC-GACCCTC---GCGCGCCGTCGCCTCGGCGGCGGCGCTC-----CCAACGCGACCCC0000000010000000100100100000000000000000000000000000000000000010000100000000000000000000000000000000000000010000100000000000000000000000000000000000000000100100000000000000000000000000000000000000000100100000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000 Chrysolepis_chrysophylla TCGAAACTTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-C-GGGGGGCGCCCGTCGCCCCCTCGCCCCCCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCTAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGCGCGCCCCCGGGTTCGGCGCCTT-ACGAACTATTCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCTTTC--GGCCGAGGGCACGTCTGCCTGGGTGTCACGCATCGTTGCCCCCCCCC--AAA-CTCCGG-TTCGGG-CGGGG-CGGAAGTTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGCCGTGCGCGCCCC-GTCGCCCGAACGCGCTCCTAC-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----CCAACGC------0000000000000000000000010000000000000000000001000000000000011100000010000000000000000000001100000000000001100000010000000000000000000010000000000000000001000010000000000000000000000000000000000000011000010000000000000000000000000000000010000000000000000000000000000010000000000000000000010000000000001011000100000000000000000000010000000000000011 Lithocarpus_lucidus TCGAAACCTGCCCCGCAGAACGACCCGCGAACGGGTGACAACCGACGGGGGG---------CGCTCGTCG----------CCCCCTCTCGCGGGCGGGG--AC-CCCGCGTC-TCCC--GCCC-GCAAACCAAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCGCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC-TCAAACCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCC-0000010100000110010100001000000000000000000000000000000000111100000001000000000000000000000000000000000011100000001000000000000000000000000000000001111111000001000000000000000000000000000000011111111000001000000000000000000000000000000001000000000000000000000000000001000000000000000000001100000000011011000010000000000000000000001011100000000111 Lithocarpus_echinifer TCGAAACCTGCACAGCAGAACTACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCAGGCGGGG--AC-CTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGTCCCCCCCC--AAATCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCTCGCCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100000210010000000100000000000000000000000010011111111100000000100000000000000000000000000001111111100000000100000000000000000000001111110111111111000000100000000000000000000001111000111111111000000100000000000000000010100111100000100000000000000000010011100000100000000000000000000010110010111011000001000000000000000000000000000100011111 Lithocarpus_rotundatus TCGAAACCGGCACGGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG----------CCCCCTCCAGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCGC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAACCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGCCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAG-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAGCCCCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACGATCGGTGGTTCTTCGGCCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGCCGCC---CCGGCGGCG---CTC-----ACAACGCGACCC-0000010100000110010000000010000000000000000000111110011111111100000000010000000000000000000011110011111111100000000010000000000000000000000011110111111111000000010000000000000000000000011000111111111000000010000000000000000000011111100000010000000000000000001111100000010000000000000000000001110010111011000000100000000000000000000000001100011111 Lithocarpus_blumeanus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGCCG----------CCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCAAAGGAAATCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCC---AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCAGTCGTGCGCGCCCC-GCCGTCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCC-0000010100001110010000000001000000000000000000000000000011111100000000001000000000000000000000000000000111100000000001000000000000000000000000000000000111000000001000000000000000000000000000000000111000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000000111000000010000000000000000110000000000000011 Lithocarpus_havilandii TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCACGCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTTTACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGC-TCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GTCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCCC0000110100101110010000000000100000000000000011000000000000011100000000000100000000000000011100000000000001100000000000100000000000000010000000000000000001000000000100000000000000000000000000000000001000000000100000000000000000000000100000000100000000000000000000000000000100000000000000010000000000001011000000001000000000000000010000000000000011 Lithocarpus_bennettii TCGAAACCTGCACAGCAGAACGACCCGCGCACCGTTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCGG-CGGGG--AC-TTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCACGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGTCGGAGGCCCCTGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTCGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCC----AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCATGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100001110010000000000010000000000000000000000000000001100000000000010000000000000000100000000000001100000000000010000000000000000000000000000011111000000000010000000000000000000000000000111111000000000010000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000111000000000100000000000000110000000000000011 Lithocarpus_enclesiacarpus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAA--------------------------------------CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCGCGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGGCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTCGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCACCCC-AAACCTCCGGGCTAGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTCCTCGCGCGTCGCC---TCGGCGGCG---CTCGCATCACAACGCGACCCC0000010100001110011000000000001000000000000011000000000000011100000000000001000000000000011100000000000001100000000000001000000000000000000000000000001111000000000001000000000000000000000000000011111000000000001000000000000000000000000000000001000000000000000000000000000001000000000000000000000000000111000000000010000000000000110000000000000011 Lithocarpus_conocarpus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG--------GCGCTCGTCG---------CCCCCCTCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCT--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGTCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTTGTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGCGACCCC0100011100000110010000000000000100000000000000000000000000000100000000000000100000000000000000000000000000100000000000000100000000000000000000000000000011000000000000100000000000000000000000000001111000000000000100000000000000000000000000000000100000000000000000000000000000100000000000000000000000000111000000000001000000000000110000000000000011 Lithocarpus_luteus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG---------CGCTCGTCG---------CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGAGACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGG-TCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC---GCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGTCCGGG-CGGGG-CGGAAGCTGGCCTCCCGCGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACGATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GCCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000010100000110010000000000000010000000000000000000000001111100000000000000010000000000000000000000001111100000000000000010000000000000000000000011111111000000000000010000000000000000000001111111111000000000000010000000000000000000000000000000010000000000000000000000000000010000000000001100000000011011000000000000100000000000000111100000000111 Lithocarpus_ruminatus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAAACGACGGGGGA--------GCGCCCGTCG---------CCCCCCTCTCGCGTGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGCTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCTCC----AACCCTCTGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGTGCCCGCGCG----CGCGGTTAGCCTAAAAGCGAGTCCTCGGTGACGAGCGCCACGACAATCGGTGGTTGTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------0000011100000110010000000000000001000000000000000000111111111100000000000000001000000000000000000111111111100000000000000001000000000000000000110111111111000000000000001000000000000000000111111111111000000000000001000000000000100111100000000000001000000000000111100000000000001000000000000000000001111011000000000000010000000000000000000000001111 Lithocarpus_revolutus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACGACCGACGGGGGG---------CGCTCGTCGCCCCC-------CCCCCTCGCGGGCGGGG--AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACG-GC-AAGGAAACCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATATAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAG-GCC--TC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCTCCAGACCTCCGGGCCGGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCC---TCGGCGGCG---CTC-----ACAACGCGACCC-0000010000000110010000000000000000100000000000000000000000000011100000000000000100000000000000000000000000011100000000000000100000000000000000001111111111000000000000000100000000000000000111111111111000000000000000100000000000000001100000000000000100000000000000100000000000000100000000000000000001111011000000000000001000000000000000100000000111 Lithocarpus_lampadarius TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACTGACGGGGGG--------GCGCTCGTCGCCCC-TCG-CCCCCATTCCGGGGGCGGGGGGAC--TCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCCC-ACGAACTGTACAGAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGGGTTCGGG-CGGGG-CGAAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGTCGCCGCCTCGGCGGCG---CTC-----ACAACGCGACCC-0110011000000110010100000000000000010000000000000000000000000011100000000000000010000000000000000000000000011100000000000000010000000000000000001111111111000000000000000010000000000000000011111111111000000000000000010000000000000000000000000000000010000000000000000000000000000010000000000100000000011011000000000000000100000000000111100000000111 Lithocarpus_turbinatus TCGAAGCCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CAGGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGTCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCCCCCC--AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTGTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GTGCGTCGCC---TCGGCGGCG---CTC-----ACAACGC------2000000000000110010000000000000000001000000000001110011111111100000000000000000001000000000000110011111111100000000000000000001000000001111111110111111111000000000000000001000000001111111000111111111000000000000000001000000000011111100000000000000001000000001111100000000000000001000000000000001110111011000000000000000010000000000000000011111111 Lithocarpus_beccarianus TCGAAACCTGCGCAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCGAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTTGCCCCACCCCC-AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGGGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCT-GACGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCC---TCGGCGGCG---CTC-----ACAACGC------1000000000000110010000000000000000000100000000000110011111111100000000000000000000100000000000010011111111100000000000000000000100000001111111110111111111000000000000000000100000000111111000111111111000000000000000000100000000001111100000000000000000100000000111100000000000000000100000000000000110111011000000000000000001000000000000000001111111 Lithocarpus_kalkmanii TCGATGCCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-C-GGGGGGCGCCCGTCGCCCCCTCG-CCCCCCTCTCGCGGGCGGGG--AC-CTCGCGTC-TCTC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCCAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGCGCGCCCCCGGCGTCGGCGCCTT-ACGAACTGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCACTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--AAACCTCCGAGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAATCGGTGGTTCTTCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GGCCCTC---GCGCGTCGCC---TCGACGGCG---CTC-----ACAACGCGACCC-0000000000000110010000000000000000000010000000011110011111111100000000000000000000010000000001110011111111100000000000000000000010000000111111110111111111000000000000000000010000011111111000111111111000000000000000000010000000011111100000000000000000010000001111100000000000000000010000000000001110111011000000000000000000100000000000000011111111 Lithocarpus_palungensis TCGAAACCTGCCCCGCAAAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGC-GCCCCCGCG-CCCCCCCCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCC--GCCC-ACAGACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAAGCCCCTCGGGACCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGCGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGATCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGC------GCCCCAGCGGCG---CTC-----GCAACGCGACCCC1100000000002110010100000000000000000001000000000001111111111100000000000000000000001000000000001111111111100000000000000000000001000000000001110111111111000000000000000000001000000000111000111111111000000000000000000001000001100111100000000000000000001000010011100000000000000000001000000001110010111011000000000000000000010000000000011100011111 Lithocarpus_pulcher TCGAAACCTGCCCCGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGCCGCCCCCGCG-CCCCCCCCTCGGGGGCGGGGG-AC-CCCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGGCACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACTGTCCGAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCTGAGGGCACGTCTGCCTGGGTGTCACGCACCGTCGCCCCCCCC---AAACCTCCGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCAACGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCG-CGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCCC1100000000002110010100000000000000000000100000000001111111111100000000000000000000000100000000001111111111100000000000000000000000100000000111110111111111000000000000000000000100000011111000111111111000000000000000000000100001100111100000000000000000000100010011100000000000000000000100000010110010111011000000000000000000001000000000011100011111 Lithocarpus_sericobalanus TCGAAACCTGCCCCGCAGAACGACCCGCGAAC-GGTGACAACCGACGGGGGG---------C-CTCGGCG----------CCCCCTCTCGCGGGCGGGGG-AC-CTCGCGTC-TCCCT-GCCC-GCAAACCGAACCC-GGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGGCACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAGAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC---GAGCCTACGGGCTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGCGACCCC1100010100002110010100000000000000000000010000000000001111111100000000000000000000000010000000000000111111100000000000000000000000010000000000010111111111000000000000000000000010000000001000111111111000000000000000000000010010100111100000000000000000000010000111100000000000000000000010000000010010111011000000000000000000000100000001100000000111 Lithocarpus_keningauensis TCGAAACCTGCCCCGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGG-CGGGGGGGCGCTCGTCGCCCCCGCG-CCCCCCTCTCGGGGGCGGGGG-AC-CTCGCGTC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAGTCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCTT-ACGAACCGTCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCCCTCGGGGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCCC--GAGCCTCCGGGCCCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCCCGGCGGCG---CTC-----GCAACGC------1100000000002110010100000000000000000000001000111110011111111100000000000000000000000001000011110011111111100000000000000000000000001000011111110111111111000000000000000000000001011111111000111111111000000000000000000000001000000011100000000000000000000001000001100000000000000000000001000000000110111011000000000000000000000010000000000000111111 Lithocarpus_clementianus TCGAAACCTGCACAGCAGAACGACCCGCGAACCGGTGACAACCGACGGGGGGGC-GGGGGGCGCTCGTCGCCCCTGCG-CCCCCCTCCCGCGGGCGGGG--AC-CTCGCGCC-TCCC--GCCC-GCAAACCGAACCCCGGCGCGGAACGCGCCAAGGAAATCGAA-CCAAGAGA-GCCACGCCGGAGGCCCCGGACACGGTGCGCCCCCGGCGTCGGCGTCCT-GCGAACTGTACAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGAA-GCCATTC--GGCCGAGGGCACGTCTGCCTGGGCGTCACGCACCGTCGCCCCCCCC---AAACCTCCGGGTTCGGG-CGGGG-CGGAAGCTGGCCTCCCGTGCGCGCCCGCGCG----CGCGGTTAGCCCAAAAGCGAGTCCTCGGCGACGAGCGCCACGACAACCGGTGGTTCTCCGACCCTCGTTCCCCGTCGTGCGCGCCCC-GCCGCCCG------GTCTCGA-GACCCTC---GCGCGCCGCCGCCTCGGCGGCG---CTC-----GCAACGC------0000000000000110010000000000000000000000000100000000000111111100000000000000000000000000100000000000011111100000000000000000000000000100000000000000111111000000000000000000000000100000000000001111111000000000000000000000000100000000000000000000000000000000100000000000000000000000000000101100000000011011000000000000000000000001001011100000000111 ; END; BEGIN ASSUMPTIONS; CHARSET onegap = 53 79 - 83 113 118 - 119 417 - 420 567 589 622 - 624 628 - 632 ; CHARSET dna = 1 - 645 ; CHARSET indels = 646 - 648 650 652 654 656 658 - 660 662 - 665 ; CHARSET its1 = 1 - 239 ; CHARSET code58 = 240 - 404 ; CHARSET its2 = 405 - 645 ; CHARSET itsefacml = 1 - 52 54 - 78 84 - 112 114 - 117 120 - 416 421 - 566 568 - 588 590 - 621 625 - 627 633 - 648 650 652 654 656 658 - 660 662 - 710 756 - 800 ; CHARSET itsefaclu = 1 - 52 54 - 78 84 - 112 114 - 117 120 - 416 421 - 566 568 - 588 590 - 621 625 - 627 633 - 648 650 652 654 656 658 - 660 662 - 665 846 - 878 909 - 949 ; CHARSET itsegscml = 1 - 52 54 - 78 84 - 112 114 - 117 120 - 416 421 - 566 568 - 588 590 - 621 625 - 627 633 - 648 650 652 654 656 658 - 660 662 - 665 711 - 755 801 - 845 ; CHARSET itsegsclu = 1 - 52 54 - 78 84 - 112 114 - 117 120 - 416 421 - 566 568 - 588 590 - 621 625 - 627 633 - 648 650 652 654 656 658 - 660 662 - 665 879 - 908 950 - 991 ; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; WTSET ITSMRIS REAL = 1.00: 1 - 665 700 740 746 783 832 876 906 - 907 943 988 , 0.00: 666 - 667 670 - 672 676 - 677 682 - 683 685 687 689 696 - 697 711 - 712 714 - 717 721 - 722 727 - 728 730 732 734 744 757 - 758 760 765 767 - 768 771 - 772 775 - 777 779 791 802 - 803 805 808 810 813 816 - 818 820 - 822 824 835 839 , 0.05: 668 703 747 784 828 841 843 910 - 911 913 915 - 916 918 - 921 925 927 - 928 932 - 933 936 938 946 948 - 949 , 0.01: 669 736 749 763 766 796 , 0.22: 673 , 0.26: 674 , 0.09: 675 759 780 799 807 909 914 929 935 937 940 947 951 - 952 954 956 958 - 961 965 - 966 968 - 970 973 - 977 981 - 982 990 - 991 , 0.03: 678 691 705 708 723 , 1.36: 679 , 0.94: 680 , 0.08: 681 704 785 - 786 800 , 0.13: 684 709 756 , 0.31: 686 693 719 729 838 , 4.03: 688 , 0.07: 690 797 , 0.30: 692 698 , 0.84: 694 , 0.62: 695 827 , 0.42: 699 770 , 0.02: 701 - 702 713 753 795 , 0.19: 706 710 755 761 , 0.15: 707 787 812 840 , 0.32: 718 782 941 - 942 , 0.04: 720 726 748 , 1.38: 724 , 0.88: 725 , 0.34: 731 806 , 4.44: 733 , 0.12: 735 762 764 792 - 793 811 844 - 845 , 0.06: 737 739 742 750 774 781 830 , 0.29: 738 743 804 , 0.95: 741 , 0.51: 745 , 0.21: 751 837 842 , 0.18: 752 778 930 934 950 953 955 957 978 980 984 - 985 , 0.20: 754 788 , 1.50: 769 , 0.28: 773 , 0.35: 789 829 , 0.11: 790 798 , 0.14: 794 912 917 926 931 945 , 0.25: 801 , 0.39: 809 , 0.45: 814 944 972 , 2.23: 815 , 0.16: 819 825 , 0.50: 823 860 893 922 - 923 , 0.38: 826 , 0.68: 831 , 0.93: 833 , 0.91: 834 , 0.10: 836 , 0.17: 846 - 853 855 - 858 861 - 862 864 - 867 869 - 871 873 877 - 891 894 - 895 897 - 899 902 905 , 0.33: 854 859 863 872 874 892 896 900 903 - 904 908 , 6.83: 868 901 , 0.83: 875 , 0.23: 924 , 0.27: 939 962 967 979 , 2.73: 963 , 0.64: 964 986 , 0.36: 971 , 0.82: 983 , 0.73: 987 , 0.55: 989 ; END;