NEXUS
[File created by TreeBASE:  7/26/07  20:59:36]
[Matrix accession#: M1033]

BEGIN TAXA;
	TITLE M1033;
	DIMENSIONS  NTAX=8;
	TAXLABELS
		Moringa_longituba_AF378598	Moringa_drouhardii_AF378581	Cylicomorpha_AF378580	Cylicomorpha_AF378579	Carica_microcarpa_AF378578	Jarilla_heterophylla_AF378576	Jarilla_chocola_AF378577	Jacaratia_corumbensis_AF405245
	;
END;

BEGIN CHARACTERS;
	TITLE M1033;
	DIMENSIONS NCHAR=570;
	FORMAT MISSING = ? GAP = - DATATYPE = DNA ;
	MATRIX
		Moringa_longituba_AF378598           GTAACAGCTTTTGAGCGAGTCG-CTCTGCTGGG-CGCTTGTACAAAA-TTTGTGTGACCTCCCCRCTC--GGGGCGCGCCGTTCCCAGGGTTGTTTTGGGTGTCGCGCCCTA-CGCGGTTCCATGTCCTTAC--CTC----CTAGTGCGGGGGCAGCCGGGCTAGAGCCACGCACCGCCCCAGTACGGATTTTACTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCACTTGGTAGCTCAGAAACTTGCGTTCAACGCGGGTTTCGGTAGGCCGGCTCCCGTGCAGACGGACCCACAGTTTCGTAGCAGCGGGG-GCT------TAGGGAAGCCCCTAGCGCCCCGCCT-TTAACCGGAGGGC----ACGCGG---------AGACCGAGCGCCAACCGGATTTTTGC-TCGGAGCTCCCTGCGGCGC--AGT--GCCGAACCGCCACCATCTTTTTCGGAGC-ACGTCGTCGCA--CGCGCTCTACTCTGGGGTCCAGTCCGCCCTCGTGGGCGA-TC
		Moringa_drouhardii_AF378581          --AACAGCTTT-GAACGAATCA-CTTTG-TGGGACACTTATACAACA-TTTGTGCGAGTTCCCCGCTC--GGG-CGTGTTGTTCCCAGAGTTGTTTTGTGTGTCAGGTCCTA-CGCGGTTC?TTAAGTTTAC--TTA----CTCGTACGGGGGTAGTGGAGCTAGAGCCACGTACCGTCCGAGTATAGATTTTACTAAGAGCCGTTACCTATAGAGCCGATAGCGTAACTACTTCTTGCATCACTTTACTCTATGAATCACACTTAACATCTTAGAACACTCGGTAACTCAGAAACTTGCGTTCAATGTGGGTTTCGGTAGTTCAACCCCCGTGCAGACGGATCCACAGTA-CGTA?CAGCGGGG-GCT------TAGGGAAATTCCTAGCACCCAGTCT-ATAACCGGA----TAAGACGTGG---------AAATCGAGAGCCAACCGGATTTTTAC-TCAGAGTTCGCTGCGGCAC--AGT--GTCGAACCGTCACCATCTTTTTCGAAGT-ACGAGGAAGCA--CGTATTCTACGCTGGAATTCAATTCGTCCTGGTAGGTRACTC
		Cylicomorpha_AF378580                GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACCTTTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGTCCGCCCTGATGGG---TTC
		Cylicomorpha_AF378579                GTAACAGCTTT-GGACGTATCGTCTT-GTTGGG-CTCTTGATCAACA--CTGT---ATTTCCCTCAACGAGGG---------TCCCAGAGTTGTTT-GGGG--CCGCACC?TTCGCGGTTCCTTTT----ACTTTTGTTTTCTCACGAGCGAATAGCAGAGCACGATCCACATGCTACTCGCGTATAAATTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAAAAACTTGCGTTCAACGCGGGATCCGGTAGACCGACTCCCGTGCAGACGGACCCGCAGTG-CGTATCAGTGGGA-GTTTT----TGCAGTGCTTCCTAACA-CCCGCCT-ACTACTGGAGGGCAAACACGCGAA-T-GCCACAAATCG----CCTACCAGATTTATAGTTAAGAGCTCGCCGTT-CATGGAGCTTGCTCAACCACCAAATAATTTTTAGA-GCTTCGAGAAA-CA-AGCTAAACAACGCTGGGGTCCAGT?CGCCCTGATGGGCAACTA
		Carica_microcarpa_AF378578           GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CGCTTGATCAAAA---TAT--GAG-CCCCGCAAA--GGGGCGCGCGAGCCCCGGAGTTGTTT-GGGG--CCGCGCTTTTCGCAGTTCCTTGT----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACAAGCCACACGCCGCCCACGTTTAGATATTGCTGAAAGCCGTTGCCTATAGAGCCGACAA--------------------CTTGACGCTATGAACGACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGATCCGGTAGGCCGACTCCCGTGCAGACGGACCCACAGTG-CGTGTCAGCGGGGGTTTTT---AGGGTC-GCTTCCAGGCC-CCCGCCT-ACGACCGGAGGGCAAGTGCGCCGCGT-GCC-GGCATCG----CCAACCGGGTTTAT-GCTTCGAGCCCTCCGCT-CGCCGTTCCTGCTCAACCACCAAATTGTTTG-CGATGC-GATAGAA-GCGGACCG-AGTGGCGCTGGGGTCCAGTCCGCCCTGCTGGGCGACTT
		Jarilla_heterophylla_AF378576        ------------GGACGTGTCGTCTA-GCTGGG-CTCTTAACCA-CGAACTGT--GAG--CCCACAAC--GGGGCGCACCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGT----AC--TTGCTTTCTCGCAAGCGGACAGCAGGGCAC?AGCCACGCGCCGCCCGCGTTAAGGTTTTGCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTAGACCAACTCCCGTGCAGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTT-ATACAC-GCTTCCAGACA-CCCGCCT-AAGACCGGAGGGCGTTCGCTC-GGGTGGCC-GGCGACG----CCAACCATGTTTA-CGCTTCGAGCACGCC?CT-CGTCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGGCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC
		Jarilla_chocola_AF378577             GTAACAGCTTT-GGACGTGTCGTCTT-GCTGGG-CTCTTAACCA-CAAACTGT--GAG--CCCACAAC--GGGGCGCGCCGGACCCGGAGTTGTTT-GGTG--CCGCGCCTTTCGCAGTTCCTTGC----AC--TTGTTTTCTCGCGAGCGGGCAGCAGGGCACGATCCACGTGCCGCCCGCGTTAAGGTTTTTCTGAGAGCCGTTGCCTATAGAGCCGAGAGCGTAGCTACTTCTTGCATCGCTTTACGCTATGAACCACACTTAACGTCTTAGGGCGCTTAGTAGCTCAGAAACTTGCGTTCAACGCGGGGTCCGGTGGACCGACTCCCGTGCGGACGGACCCACAGTG-C-TGTCAGCAGGGTGTTTTTTTAGGCAC-GCTTCCATACA-CCCGCCTAAAGACCGGAGGGCGTTCGATC-GGGTGGCC-GGCGACG----CCAACCAGGTTTA-CGCTTCGAGCACGCCGCT-CGCCGCTCCTGCTCAACCACCAACTTATTT--CGCTGC-GACAGA--GCAGACCGACGTGTCGCTGGGGTCCAGTCCGCCCTGATGGGCGACTC
		Jacaratia_corumbensis_AF405245       GTAACAGTTTT-GGACATGTCGTCTT-GCTGAA-CGTTTGATCAACA--CTGT--TACCTCCTACAAC--GGGGCGCGCCAACCCCGGAGTTGTTT-AGAG--CCACGT?TTTCGGAATTCCTTTT----AC--TTACCTTCTCGTGAACGGGCAGCA-AGCACAAGACACACGCCGCTCGCGTTTAGGTTTTACCGATAGCCGTTGTATATAGAGCCGAGAGCGTAGCTACTTCTTGTATCGCTTTACGCTATGAACTACATTTAACATCTTAGTATACTTAGTAGTCCAGAAACTTGCGTTCAACACGGGGTTCGGTAGGTCGACTCCCGTACAAACGGATTCACAATA-CGTATCAGCGGGGTTTTTTTTTAGGGAT-GCTTCCAGACG-TCCACTT-ACAACCGGA?GGCAAGTACAC-GG-TGGGCTGGC---------------------------------------------------------------------------------------------------------------------------------------
	;
END;

BEGIN CODONS;
GENCODE UNIVNUC 
 ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 END;