NEXUS
[File created by TreeBASE:  7/26/07  20:59:52]
[Matrix accession#: M1068]

BEGIN TAXA;
	TITLE M1068;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Aureobasidium_pullulans	Ceratomyces_C3ABI	Rhadinomyces_sp._1	Corethromyces_bicolor	Corethromyces_sp._1	Botryandromyces_ornatus	Stigmatomyces_rugosus	Stigmatomyces_scaptomyzae	Stigmatomyces_hydrelliae	Rhachomyces_philonthinus	Rickia_passalina
	;
END;

BEGIN CHARACTERS;
	TITLE M1068;
	DIMENSIONS NCHAR=525;
	FORMAT DATATYPE = DNA MISSING = . GAP = -  ;
	MATRIX
		Aureobasidium_pullulans         AGCAACCCCAACTTC--GGAAGGGGTGTATTTATTAGATAAA-AAACAACTTTAGGATAGTGGCCTACCAAACGGGTAACGGGGAATTAGGGTTCTATTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAATAAATACTGATACAGGGCTCTTTTGGG-TCTTGTAATTGGAATGAGTACAATTTAAATCCCTTAAAGCGTATATTAAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGAACCTTGGGCCTGGCTGGCCGGTCCGCCTCACCG-CGTGTACTGG-TCCGGCCG-GGCCTTTCCTTCTGGGGAGCCGCATGCCCTTCACT-GGGCGTGTCGGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGCATTAGCATGGAATAATTGGTTTCTAGGACCGCCGTAATGATTAATGAAAGCATTTGCCAAGGATGTTTTCAGAAAGGGGAT
		Ceratomyces_C3ABI               AGCAACCCCGACTCA--CGAAGGGGTGTATTTATTAGATAGC-AAGCAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACTGATACAGGATTCTTTTGGA-TCTTGTAATTGGAATGAGTACAATTTAAACCCATTAAAGCGTATATTAAAGTTGTTGCAGTTAAAACGCTCGTAGTTGAACTTTGGGCCTGGCTGGCCGGTCTGCCTCACCG-CGTGTACTGG-TCTGGCTG-GGTCTTTCCTCTTGGGGAGCTGCATGCCCTTCACT-GGGTGTGCCAGGGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTTGTATTAGCATGGAATAATTGGTTTCTAGGACCGCCGTAATGATTAATGAAAGCATTTGCCAAAGATGTTTTCAGAAAG-GGAT
		Rhadinomyces_sp._1              AGCAATCTCGACTCA--CGAAGAGATGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAAGTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACCGATACAGGTCTTTTT-GGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGGCTTGGTTGGCCGGTCCGCCTCACCG-CGAGTACTGG-TGCGATTG-GGTCCTTCTTCCTGGAGATCTGCACTGTCTTTATT-GATGGTGTTAGGGAACCAGGGCTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGTCTTAGCATGGAATAATTGGTTTTCACGACCACCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Corethromyces_bicolor           AGTAAACTCGACGCA--AGTAGAGAGGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATAAGGGTTCGATTCCGGAGAGGGGGCGACC---TCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAT-GGGGAG-TAGTGACAAGAAATAACGATACAGGGTCCTTACGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCGTATATTAAAGTTGTTGCAGTTAAAACGCTCGTAGTCGAACTTCGGGCCTGGTCGGCCGGTCCGCCTCCTCGGTATGTACTGGCTCC-ATCGGGGTCTTTCCCCCTGGATAAGCTCCTGTCTCCTATA-GTGTGTGTTGGGGAACCGAGACTT--ACACTGAGAAAATTAGAGTGTTCAAACGCGGCCT--GCTCGCTTTACCCTGGAG-AATTGGTTT-CCGAACCACCGTAA-----AATGAAAGCATTTGCCACGGAT-TTTTCAGAAAGGGGAT
		Corethromyces_sp._1             AGCAATCTCGACGCA--AGTAGAGATGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGATTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAGGTAGTGACAAGAAATACCGATACAGGGTCCTTTCGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGGCTCGGTCAGCCGGTCCGCCTCACCG-CGTGTACTGG-TGTGATTG-GGTCTTTCTTCCTGGAGAACCGCATGGGCTTTATT-GTCTGTGTTGGCGAACCAGGACTTTTACTTTGAGAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGTCTTAGCATGGAATAATTGGTTT-GACAACCACCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Botryandromyces_ornatus         AGCAATCCCGACGCA--AGAAGGGGTGTGTTTATTAGATCGC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACCGATACAGGGCCTCTTTCGG-TCTTGTGATTGGAATGAGTACAATTTAAATCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAACTCGGGCCTGGCCCGCCGGTCCGCCTCACCG-CGTGCACTGG-TTGGGCCG-GGTCTTTCTCCCTGGAAATCCGCATGGCCTTCACT-GGCTGTGCCGGGGGACCAGGACTGTTACTGTGAAAAAATCAGAGTGTTCAAAGCAGGCCTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCGCGACCGTCGTAATGATTAATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Stigmatomyces_rugosus           AGCAACTCCAACTCA--TGAAGGAGTGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-GGGGA-GTAGTGACAAGAAATACTGATATAGGGTCCTATTGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGACCTGGTTAACTGGTCCGCCTCACCG-CGAGAACTGG-TGTGATTG-GGTCTTTCCTCTTGAGGTGCTGCATGCTCTTAACT-GGGTGTGTTAGTGATTCA-GACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCACGACTACTGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Stigmatomyces_scaptomyzae       AGCAAATCCGACTTA--GCAAGGAGTGTATTTATTAGATATTTAAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACTGATACAGGGTCCTATCGGA-TCTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGATTTAATCGCCCGGTCCGCCTCACTG-CGAGAACTGG-TTGCGATCGAGTCTTTCTTCTTGGTAAACTGCATGCCCTTTATT-GGGTGTGTTGGTGCACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTTCACGACTACCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Stigmatomyces_hydrelliae        AGCAAGCTCGACTTA--CGAAGGGGTGTATTTATTAGATATT-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-GGGGAAGTAGTGACAAGAAATACTGATACAGGGTCCTATAGGA-TCTTGTAATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAATTGTTGCAGTTAAAACGCCCGTAGTTGAAGTTTGGACTTGGTCAGCCGGTCTGCCTCACCG-CGAGTACTGG-TGTGATTG-AGTCTTTCTTCCTGGAAAACTGGATGCCCTTTATT-GGGTGTTTTAGAGGACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTAGCATGGAATAATTGGTTTATACGACTACCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCAGAAAGGGGAT
		Rhachomyces_philonthinus        AGTTCACTCAACTCA--CGGCGAGGTGTATTTATTAGATATC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCCGACAC-GGGGAAGTAGTGACAAGAAATACCGATACAGGGTCCTTTCGGA-TGTTGTGATTGGAATGAGTACAATTTAAACCCATTAAAGCATACATTAAAGTTGTTGCAGTTAAAACGCCCGTAGTTGAAATTTGGGTCTGGTCCTCTGGTCCGCCTCACCG-CGAGCACTGG-CAGGATTG-GGTCTTTCTTTCTGGAGAACTGCATGCCCTTCACT-GGGTGTGTCAGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTTGCTCGCCTTA-CATGGAATAATTGGTTTTCACGACCGCCGTAATGATTGATGAAAGCATTTGCCATGGATGTTTTCA-AAAG-GGAT
		Rickia_passalina                AGCAAACTCGACTCA--CGA-G-GGTGTATTTATTAGATCGC-AAACAAGTTTAGGGTAGTGTCCTCACAGACGGGTAACGGGGAATTAGGGTTCGACTCCGGAGAGGGGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACAC-A-GGAGGTAG-GACAACAAATACCGGTACAGGGCT-TTTTGGG-TCTTGTAATTGGAATGAGTACAA-CTAAACCCATTAAAGCATACATTAAA----T-GC-GTTAA---GCCCGCAGTTGAAA-TTGGGCTTGGCA--GCGGTCTGCCTCA-CG-CTAGTACTGG-TATGGCCG-GGCCTTTCT-CCTGGAGAACT-CATGCTCTTTATT-GAGTGTGTTAGGGAACCAGGACTTTTACTTTG-GAAAATTAGAGTGTTCAAAGCAGGCTCAT--TCGCCTTAGCATGGAATAATTGGTTTCAAGG-CTGC-GTAATGATTAATGAAAGCATTTGCCAAGGATGTTTTCAGAAAGGGGAT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 525 ; 
 CODESET * UNTITLED = Universal.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;