NEXUS
[File created by TreeBASE:  7/26/07  21:00:07]
[Matrix accession#: M1116]

BEGIN TAXA;
	TITLE M1116;
	DIMENSIONS  NTAX=12;
	TAXLABELS
		Russula_amoenolens	Russula_laurocerasi	Russula_foetens	Russula_aeruginea	Russula_parazurea	Russula_vesca	Russula_heterophylla	Russula_cyanoxantha	Russula_nigricans	Russula_densifolia	Russula_delica	Russula_chloroides
	;
END;

BEGIN CHARACTERS;
	TITLE M1116;
	DIMENSIONS NCHAR=830;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Russula_amoenolens         TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACAA--TGGAGGTGCTGGGGTTGTCGCTGACCTTT-GAAAGGGTCGTGCACACCTC-GGTGCTTTCACACAC---AATCCATCTCACCCCTTTTGTGCATCACCGCGTGGGGG--TC-CCTTTTAGCTAGTTCT----GAAGGGGG--CTTTCGCGTTTTT----ACAA-ACACA---CCCTTTTAATGCAA-----------------TATGTAGAATGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCATTCCGAAGGGCACACCCGTTTGAGTGTCGTGA-CATCC-TCAAA-CCTT-CTTGGTTTCTT--GA--CT-GAGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGACCTTTGCTTGTTGAA--GCCAGCTCCTCTTAAATGAATTAGTGGGGTCTGCTTTGCT-GATCCTT-GACGT-GATAAG-ATG-CTTCTACGTCTTGGG-TTACGCACTGTTTGCTATAGAT--------CCTGCTT-CTAACCGTCTC-------ATAGAAGACAAA----------------------------------------------CGGTCGA-----------CTT---GACCC-ACA--------------------------------------------------------------
		Russula_laurocerasi        -------------------------CATTATCGTATGA--TGGAGGTGCTGGGGTTGTCGCTGACTTTT-GAAAGAGTCGTGCACGCCTC-GGTGCTCTCACACAT---AATCCATCTCACCCCTTTTGTGCACCACCGCGTGGGGA--CCCCCTTTTGGCTAGTTCT----GAGGGGGG--TTTTCACGTTTTT----ATAACAGACAC--CCCTTTTAATGCAA-----------------TGTGTAGAATGTCTT-ACTTTTTTGCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGA-CATTC-TCAAAACCTT-CTTGGTTTCTT--GA--CC-GGGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGCTTCCC-TTTGTTGGA--GCCAGCTCCTCTGAAATGGATTAGCAAGGTCTGCTTTGCC-GATCCTT-GACGT-GATAAG-ATGTTTTCTACGTCTCGGG-TTCTGCACT---------------------CCTGCTT-CTAACCGTCTC-------ACAGAAGACAAA----------------------------------------------TGGTCAAAGTGATTGCCACTTT--GACCC-ACGAACCTTGA------------------------------------------------------
		Russula_foetens            ----------------------------------------------TGCTGGGGTTGTCGCTGACTTTT-GAAAAGGTCGTGCACACCTT-GGTGCTCTCACACAT---AATCCATCTCACCCCTTTTGTGCATCACCGCGTGGGGA---CCCCTTTTGGCTAGTTCT----GAGGGGGG--TCTTCACGTTTTT----ACA-TAGACA---CCCTTTTAATGAAA-----------------TGTGTAGAATGTCTTTACTTTT--GCGATCATACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGA-CATTC-TCAAAACCTT-CTTGGTTTCTT--GA--CC-GGGAAGGCTTTGGACTTTGGAGGCTTT----TGCTGGCCTTTC-TTTGTTGAA--GCCAGCTCCTCTGAAATGAATTAGTGGGGTCTGCTTTGCT-GATCCTT-GACGT-GATAAG-ATATTTTCTACGTCTTGGG-TTTCGCACTGTT------------------CCTGCTT-CTAACCGTCTC-------ATAGAAGACAA-----------------------------------------------TGGTCAA-GTGATTGCCACTT---GACCC-ACAAACCTTGACCTCAAATCGGGTGAGACTACCCG------------------------------
		Russula_aeruginea          TCCGTAGGTGAACCTGCGGAAGGATCATTATAGTACAA--CGGAGGTGCCTGGGCTGTTGCTGACCTC-----AAGGTCGTGCACGCCCGGAGTGCTCTCTCAC------ATCCATCTCACCCC-TTTGTGCATCATCGCGTGGGGCCCTCTCCTTT-GGCTTGTTCCG---GAAGGGGGGGGGTTCACGTTTTT----ACA-CGAACAA--CCCATT-AATGCA------------------TGTGTAGAATGTCTT-ACTTTTT-GCGGTCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGTGCACCCGTTTGAGTGTCGTGAACACCC-TCAA--CCTT-CTTGGTTT--ATCGA--CC-GGGAAGGCTT-GGACTTTGGAGGTTTTT-GTTGCTGGCCTC-----GTTTGAA--GCCAGCTCCTCCTAAACGAATTAGTGGGGTCCGCCGTGCC-GACCCTC-GACGT-GATAAGTACG-CTTCTACGTCTTGGGGTTTCGCACTGT-CG----------------CCTGCTT-CCAACCGTCTT----TG-AATGAAGACAA-------------------------------------------TCTT------------------------------ATAGACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATC-------------
		Russula_parazurea          ---------------------GGATCATTATCAWWCAA--CGGAGGCWCCGGGGCTGTCGCKGACCTT-------GGTCGTGCACGCCCAGAGTGCTCTCTCT----AAAATCCATCTCACCCC-TTTGTGCATCACCGCGTGGG--CCT-TCCTTTTGGCTTGTTCC----GAAGGGGGGG--TTCGCGTTTCTTT-CATA-CAAACA---CCCTTTTAATGCA------------------TGTGTAGAATGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATGCCC-TCAA--CCTT-CTTGGTTTCTT--GA--CC-GAGAAGGCTT-GGACTTTGGAGGTTATT-GTTGCCGGCCTC-----TTTTGAA--GCCGGCTCCTCCTAAATGAATTAGTGGGGTCCGCTTTGCC-GATCCTT-GACGT-GATAAGTTTG-CTTCTACGTCTTGGG-TTTCGCACTGT-CGCACC-----GGAA---CCTGCTT-CCAACCGTCTT----TG-AACGAAGACAA-------------------------------------------TATT------------------------------ACGAACCTTGACCTCAARTCGGGTGGGACTACCCGCTGA--------------------------
		Russula_vesca              TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTATAAAATGGAGGTGCTGGGGCTGTCGCTGACCTTTGAAAAAGGTCGTGCACGCCCGGAGCACTCTCTCAT------ATCCATCTCACCCC-TTTGTGCATTGCCGCGTGGG----TCCCCTTTTGGCTTGTTCC----GAGGGGG----ACCTGCGTTTTT----ACA-TAGACA---CCCTTTGAATGCA------------------TGTGTAGAACGTCTT-ACTTTTT-GCGATCACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATACTC-TCAA--CCTT-CTTGGTTTCTTT-GA--CC-ACGAAGGCTT-GGACTTTGGAGGTTTTTC-TTGCTGGCCTC-----TTTTGAA--GCCAGCTCCTCCTAAATGAATGGGTGGGGTCCGCTTTGCT-GATCCTC-GACGT-GATAAGCATTTCTTCTACGTCTTAG----------TGTCAGCTC------GGAA---CCCGCTTTCCAACCGTCTT----TGCAC-AAAGACAA-TGTTCGAGTTGTGA--------------------------------------------------CT---CGACCTTACAAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA
		Russula_heterophylla       ----------AACCTGCGGAAGGATCATTATCGTACAA--TGGAGGTGCTGGGGCTGTCGCTGACCTTTAAAAAGGGTCGTGCACGCCCGGAGCACTCTCTCAT------ATCCATCTCACCCC-TTTGTGCATTGCCGCGTGGG----TCCCCT-------------GAAACAAAGGGGG--ACCTGCGTTTTT----ACA-TAGACA---CCCTTTGAATGCA------------------TGTGTAGAACGTCTT-AC--------GAT---------ATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAATACTC-TCAA--CCTT-CTTGGTTTCTTT-GA--CC-AAAAAGGCTT-GGACTTTGGAGGTTTTTC-TTGCTGGCCTC-----TTTTGAA--GCCAGCTCCTCCTAAATGAATGGGTGGGGTCCGCTTTGCT-GATCCTC-GACGT-GATAAGCATTTCTTCTACGTCG-------------TGTCAGCTC------GGAA---CCCGCTTTCCAACTGTCTT----TG-----GAGACAAA-----GACCTTTTW--------------------------------------------------------------ACAA-------------------------------------------------------------
		Russula_cyanoxantha        TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTATAA--CGGAGGTGCCGGGGCTGTCGCTAACTTT-----------GTGCACGCCCT-GGTGCTCTCTCAC-----AATCCATCTCACCCCCTTTGTGCATCACCGCGTGGGTG-CTCTCCTTTTGGTTTGTTCC----GAAAGGGGG-CATTTGCGTTTTT----ATA-CAAAA----CC-----ACTGCA------------------TGTGTAGAATGTCTT-ACTATTT-GCGATAATGCGC-AATTAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGAATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCCTTCAA--CCTTTCTTGGTTTCTT--GA--CCGAGGAAGGCTT-GGACTTTGGGGGTCTTTCATTGCTGGCCTC------TTTGAA--GCCAGCTCCTCCTAAATGGATTAGTGTGGTCTGCTTTGCC-GATCCTT-GACGT-GATAAG-ATG-TTTCTACGTCTTGGG-TTTTGCACTGT-CGCTTTAGAC--------CCCGCTT-CTAACTGTCTCGTCTTGCATTCAAGACA-------GAGTTTTT-----------------------------------------------------------------AAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA
		Russula_nigricans          TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTACTA--CAGAGGTGCGAGGGCTGTCGCTGACCTTTTTCAAAGGTCGTGCACGCCC-GAGCGCTCTCGCCC---AAAATCCACCTCACCAC--TTGTGCATCACCGCGCGGGG-CCTC-CCTCTTGGCTCGCTTC----GAGAGAGG----CTCGCGTTCTT---CACATCACACACACACCTTTT-----------------------TAGTTTTGAATGTC---ATTCATTTGCGATAACACGC-AATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAA-ATTC-TCAAA-CCTT-CTTGGTTCCTT--GA--CC-AAGATGGCTTTGGACTTTGGAGGCGTTG---TGCTGGC-------TTTGCAAAAAGTCGGCTCCTCTTAAATGCATTAGTGGGGTCCCCTTTGCC-AATCCCCAGGCGT-GATAAG-ATG-TTTCTACGTCTTGGG-ATTTGCTCTGTTCACT------GGGAA---CCCGCTT-CCAACCGTCTC-------GTGAGAGACAT-CGTTCGAGCTTG----------------------------------------------------CT---CGGCAC-ACGAATCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA
		Russula_densifolia         TCCGTAGGTGAACCTGCGGAAGGATCATTATGGTACTA--CAGAGGCGCGAAGGTTGTCGCTGATCTTTCTGAAAGGTCGTGCACGCC-GGAGCGTTCTCACACAC---AATCCACCTCACCAC--TTGTGCTTCACCRCGCGGGGTCGCTCCCTCTTGGCTCGCTTC----GAGAGGGGGAGGCTTGCGTCTTTTT-CACA-CACACACACAC------------ATAATATACAGTCTGGTAGTTTAGAATATC------------------------AATCAATACAACTTTCAACAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACCCCTTGGTATTCCGAGGGGTACACCCGTTTGAGTGTCGTGAAT-TTC-TCAAA-CCTT-CTTGGTTTCTT--GA--TC-AAGAAGGCTTTGGACTTTGGAGGTCTT----TGCCGGC-------TTTGCGAAAAGTCGGCTCCTCTTAAATGCATTAGTGGGGTCCCCTTTGCC-GATCTCTAGGCGTTGATAAT-ACG-TTTCTACGTCTTGGG-ATTTGCTCTGTTC-CTT-----GGGAA---CCTGCTT-CTAACCGTCTCACC----GTCGGAGACAT-CGTTCGAGCTTG----------------------------------------------------CT---CGACCC-ACGAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATC-------------
		Russula_delica             -----AGGTGAACCTGCGGAAGGATCATTATCGTACAA--TGGGGGTACCCGGGTTGTCGCTGACTTTTC------GTCGTGCACGCCC-GAGTGCTCTCACATACAAATATCCATCTCACCCC-TTTGTGCATCACCGCGTGTGTCCCCCCTTCCTCGG-------------AGGGGGG--TGCTCACGTTTTT--AAACATCAAACA---CCC---------------------------TAGTGTAGAATGTT----CTTT-GCGCGATCACGCGCGAATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCC-TCAA--CCTG-CTTCGTT-CTATCGAA-CC-AAGTAGGCTT-GGAATTTGGAGGTTTTTT-CTGCTGGCTTCT--TCCTCTGAA--GCCAGCTCCTCTTAAAATTATCAGTGGGATCCGCTTTGCTAGATCCTC-GACGTTGATAAG-ATG-TTTCTACGTCTTGGG----------TTTCGCTC-----GGGAAGGACCTGCTT-CTAACCGTCCC------CATCGGGGACAA-TGTTCGAG------AGCCGATCGCCCTTCACGGGGTGGGAAG----------------------CTTTTCGACCCATGAAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAA--------
		Russula_chloroides         TCCGTAGGTGAACCTGCGGAAGGATCATTATCGTAAAA--TGGGGGTACCAGGGCTGTCGCTGACTTTT-------GTCGTGCACGCCC-GAGTGCTCTCACATACAAATATCCATCTCACCCC-TTTGTGCATCACCGCGTGCGTCCCCCCTTCCTCGG-------------AGGGGGGG-TGCTCACGTTTTT---AACATCAAACA---CC----------------------------TAGTATAGAATGTT----CTTT-GCGCGATCATGCGC-GATCAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGCATTCCGAGGGGCACACCCGTTTGAGTGTCGTGAACATCC-TCAA--CCTG-CTTGGTTTTTATCGAAACC-AACTAGGCTT-GGAATTTGGAGGTTTT---CTGCTGGCTTC-----CTCCAAA--GCCAGCTCCTCTTAAATGTATCAGTGGGATCCGCTTTGCTAGATCCTC-GACGTTGATAAG-ATG-TTTCTACGTCTTGGG----------TTTCGCTC-----GGGAAGGACCTGCTT-CTAACCGTCCC-------ATCGGGGACAA-TGTTCGAG--------CCGATCGCCCTTCACGGGGTGGGAAG----------------------CTTT-CGACCCATCGAACCTTGACCTCAAATCGGGTGAGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 830 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 EXSET * UNTITLED = 1 - 31 771 - 830 ; 
 END;