NEXUS
[File created by TreeBASE:  7/26/07  21:00:38]
[Matrix accession#: M1182]

BEGIN TAXA;
	TITLE M1182;
	DIMENSIONS  NTAX=6;
	TAXLABELS
		Phylloporia_ribis	Inonotus_quercustris	Inonotus_patouillardii_2339	Inonotus_rickii	Ptychogaster_cubensis	Inonotus_patouillardii_0744
	;
END;

BEGIN CHARACTERS;
	TITLE M1182;
	DIMENSIONS NCHAR=761;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Phylloporia_ribis                 CATTAACGAGTTGTGAAAGCGGAG-TCTGCTGCTGGTGTAGAAATGCGCATGTGCACGGCTCT-GTGCTCAA-TCCA-CTCAA-CCCCTGTGCACCTT--------CGAAAGCGAGTAGGCT--TCGCCCTTTGAA---GGGGGTGACCCTTA----GTGAGTA---AGGCGAGCGTGTGTGA--GCACCAGTAGCCTGAAAGCGAGCGTCTTTCATT----------TAGAGAGAGTGC-GGCCGAAAGCTTTGA----TCTTTAT-----CAACGCTTTGTGT-GTT-TGTGAATGTAATGCTCCGC-GTGGGCGA--AATAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCACCTTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTTGAGTGTCATGTTTATCTCAAACCCCAACCTCTTGTTAGGTTTGGATGGTTTGGACTTGGAGGCTTTTGCTGGTGTGCGTG--------------CTCTGCGTGTGTCGGCTCCTCTGAAAAGCATTAGCTGGACTTTGGTTTGCGCGAATGGTGTAATAGT------AACGTGTTCACCGGAAGTGCTTGCCTGACGGGT-CTGCTTCTAATTGTCTTCG-GACAAGG---------------------TCCTTTGGACCTTTGCTTGACCGTTTGACCTCAAAT
		Inonotus_quercustris              CATTATCGAGTTTTGAA-CCGAAG-TTTGTTGCTGGTACGGAAACGTACATGTGCACGGCTTTCGTGCTCAAATCCA-CTCAAACCCCTGTGCACTTTGAACGG-CTGAAG-TTAGTAGTTTAGTAACTCTCTCGACTCTCACTTCATACTTATG-TATGAGTATACAAGTAGGAGGGCTTGC-TTTTGCAGCCTTNCGAACGTTAAGAGA----------------GAAGAGAAGGTGAAGGGTGAACGCTTTGGCTAGTTTATAT--TATAAACCCTTTGTATTGTTATGTGAATGTAATGCTCCTT-GTGGGCGATTAATGAAGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCACT-TGTCTTTTTTGACTTG--CGATTTGGACTTGGAGGTTCATGCTGGCCCGGGTGACTTTGTTGTCGCCCTTTTGGTTTGTCGGCTCCTCTTAAATGCATTAGCTGGACTTTGGTTCGCGTTTACGGTGTAATAGTGTGTTATAATACTTCACCAGA-GCGCTTGCCTAACGGGT-CCGCTTCTAATCGTCCGTGTTACTTTATTGTAATAGGACAAGGATCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
		Inonotus_patouillardii_2339       NNNNNNCGAGTTTTGAAACCGAAG-CTTGTTGCTGGTACGGAAACGTACATGTGCACGGCTTTCGTGCTCAAATCCA-CTCAAACCCCTGTGCACTTTGAACGG-TTGAAG-TTAGTAGTCTAGTAACACTCTCGACTCCGACTTAGTACT------GTGAGTATACAAGTAGGAGGGCTTGC-TTTTGCGGCCTTTCGAACGTTAAGAG------------------AAGAGAGGGTGAAGGGCGAACGCTTTGACTAGTTTATAT--TATAAACCCTTTGTATTGTTATGTGAATGTAATGCTCCTT-GTGGGCGAT-AATGAAGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCACT-TGTCTTTTTTGACTTG--TGATTTGGACTTGGAGGTTTATGCTGGCCCGAGCGACTTTGTTGTTGCCCTTT-GGTTTGTCGGCTCCTCTTAAATGCATTAGCTGGACTTTGGTTCGCGTTTGCGGTGTAATAGTGTGTTATAATACTTCACCAGA-GCGCTTGCCTAACGGGT-CTGCTTCTAATCGTCCGTGTTACTTTATTGTAATAGGACAAGGATCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
		Inonotus_rickii                   CATTATCGAGTTTTGAAACCGAAGGCTTGTTGCTGGTACGGAAACGTACATGTGCACGGCTTTCGTGCTCAAATCCA-CTCAAACCCCTGTGCACTTTGAACGG-TTGAAG-TTAGTAGTCTAGTAACACTCTCGACTCCGACTTAGTACT------GTGAGTATACAAGTAGGAGGGCTTGC-TTTTGCRGCCTTTCGAACGGTGAAAGCAGGAAAACGTTCAAGAGAAGAGAGGGTGAAGGGCGAGCGCTTTGACTAGTTTATAT--TATAAACCCTTTGTATTGTTATGTGAATGTAATGCTCCTT-GTGGGCGAT-AATGAAGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCACT-TGTCCTTTTTGACTTG--CGATTTGGACTTGGAGGTTTATGCTGGCCCGGGCGACTTTGTTGTTGCCCTTT-GGYTTGTCGGCTCCTCTTAAATGCATTAGCTGGACTTTGGTTCGCGTTTGCGGTGTAATAGTGTGTTATAATACTTCACCAGA-GCGCTTGCCTAACGGGT-CTGCTTCTAATCGTCCGTGTTACTTTATTGTAATAGGACAAGGATCCCTTAGTGGCCCTTACTACTGACACNNNNNNNNNNNNN
		Ptychogaster_cubensis             NNNNNNNNNNNNNNNNNNNNNNAAGCTTGTTGCTGGTACGGAAACGTACATGTGCACGGCTTTCGTGCTCAAATCCA-CTCAAACCCCTGTGCACTTTGAACGG-TTGAAG-TTAGTAGTCTAGTAACACTCTCGACTCCGACTTAGTACT------GTGAGTATACAAGTAGGAGGGCTTGC-TTTTGCAGCCTTTCGAACGGTGAAAGCAGGAAAACGTTCAAGAGAAGAGAGGGTGAAGGGCGAGCGCTTTGACTAGTTTATAT--TATAAACCCTTTGTATTGTTATGTGAATGTAATGCTCCTT-GTGGGCGAT-AATGAAGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCACT-TGTCCTTTTTGACTTG--CGATTTGGACTTGGAGGTTTATGCTGGCCCGGGCGACTTTGTTGTTGCCCTTT-GGTTTGTCGGCTCCTCTTAAATGCATTAGCTGGACTTTGGTTCGCGTTTGCGGTGTAATAGTGTGTTATAATACTTCACCAGA-GCGCTTGCCTAACGGGT-CTGCTTCTAATCGTCCGTGTTACTTTATTGTAATAGGACAAGGATCCCTTAGTGGCCCTTACATCTGACACYTTGACCTCAAAT
		Inonotus_patouillardii_0744       NNNNNNNNNNNNNNNNNNNNNNNNGTCTGTTGCTGGTGCGGAAACGCATATGTGCACGGCTTTCGTGTTCAAGTCCAACTCAAACCCCTGTGCACCTTGAACGGGTTGAAGCTTAGTAGT-TGGTAACACTCTTGACT-TGACTTGACTTTAGTACTATGAGTATGCGATTAGAAGGGCTTGCGCCTTTCGAAAGCTTGAAAGTAGGAAAGCGTTAAA-----GAGGGAATAGAGGGTGAAGG-CGAACGCTTTGACTAGTTTATATATTATAAACCCTTTGTATTGTTATGTGAATGTAATGCTCCTTTGTGGGCGAT-AATGAAGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCGTGTTAATCTCAAATCGCT-TGTCTTTATTGACTTG--AGATTTGGACTTGGAGGTTTATGCTGGCCCCCCCGGGGT-GTTGTTGCCCCTTTGGTTTGNCGGCTCCTCTTAAATACATTARCTGGACTTTGGTTCGCGTTTGCGGTGTAATAGTGT-TGTTAATGCTTCACCAGA-GCGCTTGCCTAACGGGTTCTGCTTCTAATCGTCCGTAAGACTTTGATTTT----GACA-----------------------------CCTTTGACCTCAAAT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 761 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS gapmode = newstate ; 
 EXSET * exclude = 726 - 761 ; 
 END;