NEXUS
[File created by TreeBASE:  7/26/07  21:01:29]
[Matrix accession#: M1310]

BEGIN TAXA;
	TITLE M1310;
	DIMENSIONS  NTAX=30;
	TAXLABELS
		Cladonia_arbuscula_215	Cladonia_arbuscula_57256	Cladonia_arbuscula_5124	Cladonia_arbuscula_5122	Cladonia_arbuscula_212	Cladonia_arbuscula_202	Cladonia_arbuscula_5537	Cladonia_arbuscula_5471	Cladonia_arbuscula_5536	Cladonia_arbuscula_5300	Cladonia_arbuscula_57095	Cladonia_mitis_201	Cladonia_mitis_217	Cladonia_mitis_216	Cladonia_mitis_218	Cladonia_mitis_5524	Cladonia_mitis_5304	Cladonia_mitis_5501	Cladonia_mitis_5500	Cladonia_mitis_5376	Cladonia_mitis_s.n.	Cladonia_mitis_5339	Cladonia_mitis_5381	Cladonia_mitis_9915	Cladonia_arbuscula_5372	Cladonia_arbuscula_5429	Cladonia_arbuscula_5323	Cladonia_arbuscula_9910	Cladonia_subtenuis	Cladonia_rangiferina
	;
END;

BEGIN CHARACTERS;
	TITLE M1310;
	DIMENSIONS NCHAR=1026;
	FORMAT MISSING = ? GAP = - DATATYPE = DNA ;
	MATRIX
		Cladonia_arbuscula_215         GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGATCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_57256       ???????????CC-GAAGCTCAAGTTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGATCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5124        ?ATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5122        ??????????????GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_212         GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_202         GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATGACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATTCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5537        GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5471        GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5536        GAT?GCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5300        GATTGCTTTTTCC-GAAGCTCAAGCTG-TAGGGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_57095       ?????????????????????????????????????????????????????????????????????GGTGCCGTGAAGGT?GTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTTCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCA?AACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGG????????????????????????????????????????????????????????????????????????????????????????????????????AAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_201             GATTGCTTTTTCC-GAAGCTCAAGTTGGTAGAGCTACCGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCCCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAATACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTCATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCACACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_217             ?ATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTTGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTTTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_216             GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTTGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTTTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_218             ?ATTGCTTTTTCCCCAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTTGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAACCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5524            GAT?GCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTTGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5304            GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTTGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5501            GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATCATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5500            GAT?GCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATCATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5376            GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAACATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATCATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_s.n.            GA??GCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGTCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCTACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTTGAGAAGTCTGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGTGATTTGAAGGGTATGATTCAGTTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGATTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5339            GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_5381            GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTCGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_mitis_9915            ??????????????????????????????????????GCTGACAT?TTT-GACACCAGTG?CGAGCACGG?GCCG?GAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATAGACCCGTCGGCCTCCGAAACAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAATCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGTCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACTATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACT??????????????????????????????????????????????
		Cladonia_arbuscula_5372        GATTGCT?TTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCCGCTACTCTACTGTCATGGACCCGTCGGCCTCCGAAAAAGTGGCTGACGTTACCGCCCTGCGGACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAGTCCGATATCGAGGTTATTTCTAATGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACTTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACGATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTC?ACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5429        GAT?GCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGA?CACGGTGCCGTGAAGGTCGT?GCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCCGCTACTCTACTGTCATGGACCCGTCGGCCTCCGAAAAAGTGGCTGACGTTACCGCCCTGCGGACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAGTCCGATATCGAGGTTATTTCTAATGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACTTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACGATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_5323        ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TACTGTCATGGACCCGTCGGCCTCCGAAAAAGTGGCTGACGTTACCGCCCTGCGGACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGCCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATCGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAATGAAGAAACCTATAAGTCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACGATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_arbuscula_9910        GATTGCTTTTTCC-GAAGCTCAAGCTGGTAGAGCTACAGCTGACATATTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCCTTCTCAGCTACTCTACTGTCATGGACCCGTCGGCCTCCGAAAAAGTGGCTGACGTTACCGCCCTGCGGACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACCATCGAGGTTGAGGGCTCGGACCTTATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGACACCGGCGCATACTACATTGTCGAATCAACGGGTGTATTTACCACCACAGAGAAGGCCAAGGCGCACTTGAAGGGTGGCGCCAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGTGTTAATGAAGAAACCTATAAGTCCGATATCGAGGTTATTTCTAACGCATCATGCACAACGAATTGCCTTGCTCCTCTCGCCAAGGTCATGCACGATAACTTCACCATCATTGAGGGTCTTATGACCACCATCCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCGTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTCGTTGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCAATTGCACGTTTCGTGACGATCCGGCTGACAGTTTTCAGGCATCATGGCGTACTCTGAAGATGATCTCGTGTCCACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
		Cladonia_subtenuis             GAT?GCTATTTCCCGAAGCTCAAGCCAGTAGAGCTACAGCTGACATCTTT-GACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAATGACCCTTTCATCGAACCCCACTACGCAGTAAGATCCTTCCCAGCTTCTCTACTGTCATGGACCCGTCGGGCTCCGAAATAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTCAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACAATCGAAGTTGAGGGCTCGGACCTCATCGTAAATGGCCAAAAAGTCAAATTTTACACTGAGAAGGACCCCGGTGCCATTCCATGGAAGGATACCGGCGCATACTACATCGTCGAATCAACGGGTGTCTTTACCACCACAGAGAAGGCCAAGGCTCACTTGAAAGGTGGTGCTAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTCGTCATGGGCGTTAACAACGAGACCTATAAGTCCGACCTTGAGGTTATTTCTAACGCATCATGCACAACGAACTGCCTTGCTCCTCTTGCCAAGGTCATGCACGATGAATTCACCATCATTGAGGGTCTTATGACCACCATTCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCTTCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGTACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAATGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCTGTGGTTGACCTTACCTGCCGTCTCGAAAAGTCCGTCACCTACGATGAGATCAAGGAGGCAATGAAGAAGGCCTCCAATGGCGAATTGAAGGGTATGGTTCATTTTCGCGTTTCGTGTCTCTCTGGCTGACGGTTTCCAGGCATCATGGCTTACTCGGAAGATGATCTCGTGTCTACTGACTTAAATGGAGACAATCACTCCTGCATTTTCGATGCCAAGGCCGGTAT
		Cladonia_rangiferina           ?ATTGCTTT??CC-GAAGCTCAAGCTAGTAGAGCTACAGCTGACATCTTTTGACACCAGTGTCGAGCACGGTGCCGTGAAGGTCGTCGCAGTCAACGACCCTTTCATCGAGCCCCACTACGCAGTAAGCTCTTTCCCAGCTACTCTACTGTCATGGACACGTCGGGCTCCGAAGTAGTGGCTGACGTTACCGCCCTGCGAACTAGGCATACATGCTTAAGTACGACTCTCAGCATGGTCAATTCAAAGGTACGATCGAAGTTGAGGGCTCGGACCTCATCGTAAATGGCCAAAAAGTCAAATTCTACACTGAGAAGGACCCCGGTGCCATCCCATGGAAGGATACTGGCGCATACTACATCGTCGAATCAACGGGTGTCTTTACCACCACAGAGAAGGCCAAGGCTCACTTGAAGGGTGGTGCTAAGAAGGTCGTCATCTCAGCGCCGTCAGCAGACGCTCCCATGTTTGTCATGGGCGTTAACAACGAGACCTATAAGTCCGACCTCGAGGTTATTTCTAACGCATCATGCACAACGAACTGCCTTGCTCCTCTTGCCAAGGTCATGCACGATGAATTCACCATCATTGAGGGTCTTATGACCACCATTCACTCTTATACCGCTACTCAGAAGACTGTCGATGGCCCATCCGCCAAGGACTGGAGAGGCGGCCGCACTGCTGCTCAGAACATTATCCCCAGCAGCACTGGTGCCGCAAAGGCCGTCGGCAAAGTTATCCCAAGCTTGAACGGCAAGCTCACTGGCATGTCTATGCGTGTACCCACCTCGAATGTCTCCGTGGTTGACCTTACCTGCCGTCTCGAGAAGTCCGTCACCTACGACGAGATCAAGGAGGCAATGAAGAAGGCCTCCGACGGCGAATTGAAGGGTATGATTCATTTTCGCGTTTCGTGACTCTCTGGCTGACGGTTTCCAGGCATCATGGCTTACTCGGAAGATGATCTCGTGTCTACGGACTTAAATGGAGACAATCACTCCTGCATTTTCGACGCCAAGGCCGGTAT
	;
END;

BEGIN CODONS;
GENCODE UNIVNUC 
 ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 END;