NEXUS
[File created by TreeBASE:  7/26/07  21:01:29]
[Matrix accession#: M1307]

BEGIN TAXA;
	TITLE M1307;
	DIMENSIONS  NTAX=30;
	TAXLABELS
		Cladonia_subtenuis	Cladonia_rangiferina	Cladonia_mitis_5339	Cladonia_mitis_5501	Cladonia_mitis_5500	Cladonia_mitis_5304	Cladonia_mitis_216	Cladonia_mitis_9915	Cladonia_mitis_201	Cladonia_arbuscula_57095	Cladonia_arbuscula_202	Cladonia_arbuscula_5124	Cladonia_arbuscula_5122	Cladonia_arbuscula_9910	Cladonia_arbuscula_5471	Cladonia_arbuscula_5537	Cladonia_arbuscula_5300	Cladonia_arbuscula_5536	Cladonia_arbuscula_5429	Cladonia_arbuscula_215	Cladonia_arbuscula_57256	Cladonia_arbuscula_212	Cladonia_arbuscula_5372	Cladonia_arbuscula_5323	Cladonia_mitis_5376	Cladonia_mitis_s.n.	Cladonia_mitis_5524	Cladonia_mitis_218	Cladonia_mitis_217	Cladonia_mitis_5381
	;
END;

BEGIN CHARACTERS;
	TITLE M1307;
	DIMENSIONS NCHAR=573;
	FORMAT MISSING = ? GAP = - DATATYPE = DNA ;
	MATRIX
		Cladonia_subtenuis             ATGAGTGCGGGGGCCTAGCCCCCAGCGGTGAGTGTCT-GTCCGGGTCCGTCCGGGCTCGGCCAGCGCTCGTCGTGTACCTCAACCCCATGTCTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTCCCTGCTGGGGGGCGGCCCGCGCCCGCCAGAGGTTTATTCAAATCTGGTTTATCAGTGAAGTCCGAGTAAATATCAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGCTCGCGGGCCCTCTTTGGGGGG-CTTGCGGGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAACCGGTG--GGCCTGACCAAAACCCCCCTAAATCTCCATGATTGACC
		Cladonia_rangiferina           ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGGGTCCGTCTGGGCTCGGCCAGCACTCGTCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGTTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATCTTGTTTATTAGTGAAGTCCGAGTAGATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGG--CTTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATTTTATCCCGCGTTGGAAAGAACCGATG--GGCCTGGCCAAAACCCCCATAAATCTCCATGATTGACC
		Cladonia_mitis_5339            ATGAGTTCGGGGGCCTACCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5501            ATGAGTTCGGGGGCCTACCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCT--CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5500            ATGAGTTCGGGGGCCTACCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5304            ATGAGTTCGGGGGCCTACCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_216             ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTCCCGGGCTCGGCCAGTGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACTCCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_9915            ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTCCCGGGCTCGGCCAGTGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACTCCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_201             ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTCCCGGGCTCGGCCAGTGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACTCCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_57095       ATGAGTTCAGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTTCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGTCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCGTGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGATGTTCGCGGGCCCTCTTTAGGGGG-CTTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_202         ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGCGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGG?????TCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTCAGGGGG-CCTGCGTGTTCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GACCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5124        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGCCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGTTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTCTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTAATCCAAATTCTATTTATCAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTAGGGGG-TCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5122        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCCATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCTCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_9910        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCTTGTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTCAGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGAAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5471        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGTTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5537        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGTTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5300        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGTTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5536        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTATCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCATTAAATCTCCATGATTGACC
		Cladonia_arbuscula_5429        ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTATCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCATTAAATCTCCATGATTGACC
		Cladonia_arbuscula_215         ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGTGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACTAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_57256       ATGAGTTCGGGGGCCTAGCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCTATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGTGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACTAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_212         ATGAGTTCGGGGGCCTAGCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTACGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCAATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGTGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACTAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5372        ATGAGTTCGGGGGCCTAGCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTACGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCAATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGTGTGTCCGAAAAGCAGTGGCGATCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACTAT-AAATCTCCATGATTGACC
		Cladonia_arbuscula_5323        ATGAGTTCGGGGGCCTAGCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTT-CGGGCTCGGCCAGCGCTCATCGTGTATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTACGCTATACGGCTCATGCCGGCCCCCAGCGTTTTTCGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATTCAAATTCAATTTATTAGTGAAGTCTGAGCAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGTGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACTAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5376            ATGAGTTCGGGGGCCTACCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAAAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_s.n.            ATGAGTTCGGGGGCCTACCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAAAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5524            ATGAGTTCGGGGGCCTACCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCC-ATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_218             ATGAGTTCGGGGGCCTACCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_217             ATGAGTTCGGGGGCCTACCCCCCAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-TCTGCGTGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTCTCCCGCGTTGGAATGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
		Cladonia_mitis_5381            ATGAGTTCGGGGGCCTACCCCCTAGCGGTGGGTGTCT-GTCCGAGTCCTC-CGGGCTCGGCCAGCGCTCATCGTGCATCTCAACCCCATGTTTACCTTACCTTTGTTGCTTTGGCGGGCCTTGAGTAGGCTATACGGCTCATGCCGGCCCCCAGCGTTTTCTGCTGGGGGGCGGCTCGCGCCCGCCAGAGGTTTATCCAAATTCTATTTATTAGTGAAGTCTGAGTAAATATTAAATAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACACCCCTCAAGCGTAGCTTGGTATTGGACGTTCGCGGGCCCTCTTTGGGGGG-CCTGCGCGTCCGAAAAGCAGTGGCGGTCCCCGGGGATTTCGCGCGTAGTAAATATTATCCCGCGTTGGAAAGAACCGATG--GGCCTTGCCAAAACACCAT-AAATCTCCATGATTGACC
	;
END;

BEGIN CODONS;
GENCODE UNIVNUC 
 ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 
 END;