NEXUS
[File created by TreeBASE:  7/26/07  21:02:07]
[Matrix accession#: M1416]

BEGIN TAXA;
	TITLE M1416;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Aspergillus_versicolor	Aspergillus_pseudotamarii_NRRL443	Aspergillus_pseudotamarii_NRRL25517	Aspergillus_parasiticus	Aspergillus_ochraceoroseus	Aspergillus_nomius_NRRL29212	Aspergillus_nomius_NRRL13137	Aspergillus_nidulans	Aspergillus_flavus	Aspergillus_caelatus	Aspergillus_bombycis_NRRL28900	Aspergillus_bombycis_NRRL25593	Aspergillus_alliaceus
	;
END;

BEGIN CHARACTERS;
	TITLE M1416;
	DIMENSIONS NCHAR=312;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Aspergillus_versicolor                    GCTGATACTCGTCCAGTTAGACTGCGCGTCTCGAACCGACCCCGAAGACGCAATTAAATTACTTCAGCAAGATCACGGACTGACCTATTTGGACGTCGTGATCGCGAACGCAGCCATCGCCGCAAACTACGGGCCAGCATCCACCATGCCTCTTGAGCACCTCGAAGCACACATGCAAATAAACGCTTACGCCGTCCTTCTTCTCTTCCAGGCCACCAGGCTCATGCTCCAAGCAGCAGGAGCAGAAAACAACAGACCACCGCAATTCATCTGCATTGGCGCACCAATCAGCACAATCACCGAGCTGGAAAG
		Aspergillus_pseudotamarii_NRRL443         GATGATCGTGGTACAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTTCAGACCCTTCGGGAAGAGCACGGGGTCACGCACTTGGACGTGGTGGTAGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCTTACTGTTTCAGGCAACCCGCCTGATGCTGGA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
		Aspergillus_pseudotamarii_NRRL25517       GATGATCGTGGTACAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTTCAGACCCTTCGGGAAGAGCACGGGGTCACGCACTTGGACGTGGTGGTAGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCTTACTGTTTCAGGCAACCCGCCTGATGCTGGA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
		Aspergillus_parasiticus                   GATGATCATAGTGCAGCTTAACTGCGACTCGGAAACTGATGCCCAGGCAGCCGTCCAGACATTGCGGGAGGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCCCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCCTACTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
		Aspergillus_ochraceoroseus                ACTGATTGTCCTACAGCTGGACTGTACTTCCCAGTCTGACGCCGACGAAGCCATTGCGACGCTCAAGCAAGAATATGGCCTCACGTATCTCGATGTAGTGATCGCGAATGCCGCGATCGCCGCCAACTACGGCCCCGCGTCGACCATGCCGCTGGAGCATCTCGAAGCCCATATGAAAGTCAACGCCTACGCCGTCCTGCTGCTCTTCCAGGCCACGCGACTCCTGCTGCAAG------AGGCAGCCTCCTACCACCCTCCACAGTTCATTCTGATCGGGGCGCCCATCAGCACCATTACCGAGATGGAAGG
		Aspergillus_nomius_NRRL29212              GATGATCGTGGTGCAACTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTATCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
		Aspergillus_nomius_NRRL13137              GATGATCGTGGTGCAACTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTATCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
		Aspergillus_nidulans                      GCTGATCGCAGTCCAACTGGACAGTGGATCGAAGTCCGATCCCGCCGACGCGGTCAGCATTCTCCAGCGCGATTACGGCATTACGCATCTCGATGTAGTGATCGCGAACGCAGCTATTGCGGCCAACTACGGTCCAGCCTCGACCATGCCTCTCGAGTATCTGGAGACTCACATGCAGATTAACGCATACGCGGCCCTGCTACTGTTCCAGGCGACTAGGGTCCTTCTCC---------AGGCCGCCA------AATCGCCGCAGTTCATCTGCGTCGGGGCCCCGATTAGCACGATTACCGAGATGGAGAG
		Aspergillus_flavus                        GATGATCATAGTGCAGCTTAACTGCGACTCGGAAACTGATGCCCAGGCAGCCGTCCAGACATTGCGGGAGGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCCCTCGAGCATCTCCAGGCACACATGATGGTCAACATGTATGCTCCCGTCCTACTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
		Aspergillus_caelatus                      GATGATTGTGGTGCAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTCCAGACCCTTCGGGAGGAGCACGGGGTCACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCATCTTACTGTTTCAGGCAACCCGCCTGATGCTGTA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
		Aspergillus_bombycis_NRRL28900            GATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCTGTCCAAACCCTGCGGGAAGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGATCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACAA
		Aspergillus_bombycis_NRRL25593            GATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCCGTCCAAACCCTGCGGGAAGAGTACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACAA
		Aspergillus_alliaceus                     GATGATCGTGGTGCAGCTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 312 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;