NEXUS
[File created by TreeBASE:  7/26/07  21:02:07]
[Matrix accession#: M1418]

BEGIN TAXA;
	TITLE M1418;
	DIMENSIONS  NTAX=15;
	TAXLABELS
		Aspergillus_versicolor	Aspergillus_tamarii_NRRL25565	Aspergillus_tamarii_NRRL20818	Aspergillus_pseudotamarii_NRRL443	Aspergillus_pseudotamarii_NRRL25517	Aspergillus_parasiticus	Aspergillus_ochraceus	Aspergillus_ochraceoroseus	Aspergillus_nomius_NRRL25393	Aspergillus_nomius_NRRL13137	Aspergillus_nidulans	Aspergillus_fumigatus	Aspergillus_flavus	Aspergillus_bombycis	Aspergillus_alliaceus
	;
END;

BEGIN CHARACTERS;
	TITLE M1418;
	DIMENSIONS NCHAR=460;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Aspergillus_versicolor                    CCCA-ACCTCCCACCCGTGACTACC-TAACACT-GTTGCTTCGGCGGGGAGCCCTCT-----------CGGGGGCG-------------------AGC---CGCCGGGGACTACT----GAACTTCATGC-CTGAGAGTGATGCAGTCTGAGTCTGA---ATATAA-AATCAGTCAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGACATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGNCCGGCTTGTGTGTTGGGTCGTCGTCCCCCCCGG----------GGGACGGGCCCGAAAGGCAGCGGCGGCACCGTGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_tamarii_NRRL25565             CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCC---TTTAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_tamarii_NRRL20818             CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCC---TTTAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_pseudotamarii_NRRL443         CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCCG--TTTACGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_pseudotamarii_NRRL25517       CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCCG--TTTACGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_parasiticus                   CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG--T-CATGGCCGCCGGGG-GCG-TCAGCCCC-GGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_ochraceus                     -CCA-ACT-CCCACCG-TGTATACCGTA-CCTT-GTTGCTTCGGCGAG---CCCGCCCCCTTTTT--CTTTTAGGG--------------GGCACAGCGCTCGCCGGAGACACCAACGTGAACAC--TGT-CTGA-AGTTTTGTCGTCTGAGT-CGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCACCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCACCCCCTGGTATTCCGGGGGGTATGCCTGTCCGAGCGTCATTGCCNCCC-TCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCC---CC------AGGGGGACGGGCCCCAAAGGCANCGGCGGCACCNCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_ochraceoroseus                CCCAGACCTCCCACCCGTGTCTACT-TGACCCT-GTTGCTTCGGCGGG---CTCGCC-----------CGCCGG-A-------------------AGC---CCCCAA----CAC-----GAACCC--TGT-CTGAGAGAGATGCTGTCTGAGTGTGATTGATACCA-A-TCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCCCGGCTTGTGTGTTGGGTCGTCGTCCCTCCCGGTTCGCCCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_nomius_NRRL25393              CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG----CAAGGCCGCCGGGG-GGCATCCGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGA-ACGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCCCCTCCG----GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_nomius_NRRL13137              CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG----CAAGGCCGCCGGGG-GGCATCCGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGA-ACGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCCCCTCCG----GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_nidulans                      CCCA-ACCTCCCACCCGTGACTACC-TAACACT-GTTGCTTCGGCGGGGAGCCCCC------------CAGGGGCG-------------------AGC---CGCCGGGGACCACT----GAACTTCATGC-CTGAGAGTGATGCAGTCTGAGCCTGA---ATACAA-A-TCAGTCAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCC-TCAAGCCCGGCTTGTGTGTTGGGTCGTCGTCCCCCCCGG----------GGGACGGGCCCGAAAGGCAGCGGCGGCACCGTGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_fumigatus                     TCCA-ACTTCCCACCNGTGTCTATCGTA-CCTT-GTTGCTTCGGCGGG---CCCGCNGTTTCGACGGCCGCCGGGGAGGCTTGCGCCCCCGGGCCCGCGCCCGCCGAAGACCCCAACATGAACGC--TGTTCTGA-AAGTATGCAGTCTGAGT-TGAT---TATCGTAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCC-TCAAGCACGGCTTGTGTGTTGGGCCCCCGTCCCCCTCTCC------CGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCTGCTC
		Aspergillus_flavus                        CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCA--TTCATGGCCGCCGGGG-GCTCTCAGCCCC-GGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_bombycis                      CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG--T-CAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
		Aspergillus_alliaceus                     CCCA-ACCTCCCACCCGTGTATACTGTA-CCTTCGTTGCTTCGGCGGG---CCCGCCG--T-CATGGCCGCCGGGG-GGCTTCTGCCCCCGGGCCCGCGCCCGCCGGAGACAC-A---TGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTCACACAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCCTCGTCCCCCCC----------GGGGGACGTGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 460 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;