#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 25, 2021; 22:05 GMT TreeBASE (cc) 1994-2008 Study reference: Davey M., & Currah R. 2009. Atradidymella muscivora gen. et sp. nov. (Pleosporales) and its anamorph Phoma muscivora sp. nov.: A new pleomorphic pathogen of boreal bryophytes. American Journal of Botany, 96(7): 1281-1288. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10015] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=46; TAXLABELS Ascochyta_pisi_EU167557 'Ascochyta viciae-villosae EU167560' Atradidymella_muscivora_EU817825 Dendryphiella_arenaria_DQ411539 Didymella_applanata_AJ428534 Didymella_bryoniae_EU167573 Didymella_exigua_EF192139 Didymella_fabae_EU167566 Didymella_lentis_AY131201 Didymella_ligulicola_AY157886 Didymella_phacae_EU167570 Didymella_rabiei_EU167600 Dothidea_sambuci_DQ491505 Dothiora_cannabinae_AJ244243 Kirschsteiniothelia_aethiops_AF377283 Lophiostoma_arundinis_AJ496633 Massarina_bipolaris_AF383956 Massarina_eburnea_AF383958 Massarina_ramunculicola_AF383962 Montagnula_opulenta_AF383966 Munkovalsaria_appendiculata_DQ435529 Ophiosphaerella_herpotricha_U04861 Phaeosphaeria_eustoma_AF439479 Phoma_exigua_EU167567 Phoma_glomerata_EU273521 Phoma_herbarum_AF046018 Phoma_herbarum_AF218792 Phoma_herbarum_AY293802 Phoma_herbarum_AY293803 Phoma_herbarum_AY864822 Phoma_herbarum_DQ132841 Phoma_herbarum_DQ865105 Phoma_herbarum_EU082106 Phoma_medicaginis_EU167575 Phoma_multirostrata_EF585396 Phoma_pinodella_EU167565 Phoma_sojicola_EU167568 Pleospora_herbarum_DQ491516 Preussia_minima_DQ468026 Protoventuria_alpina_EU035444 Roussoella_hysterioides_AF009812 Venturia_carpophila_AF065849 Venturia_cerasi_EU035452 Venturia_crataegi_EU035455 Westerdykella_cylindrica_DQ491519 Wettsteinina_lacustris_AF383969 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M4192] TITLE ITS_rDNA; LINK TAXA = Taxa1; DIMENSIONS NCHAR=816; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ascochyta_pisi_EU167557 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGCTC-GCCCGCCGATTGGAC-AAA--ATTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA----------TTTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG 'Ascochyta viciae-villosae EU167560' CATT-ACCT-AGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGCTC-GCCCGCCGATTGGAC-AAA--CTTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCCTTGC-ACTCATAACGACGACGTCCAAAAGTACA----------TTTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Atradidymella_muscivora_EU817825 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCATT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTA--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAA------------------------ Dendryphiella_arenaria_DQ411539 ------------------------------------------------------------------------------------------------------ACCCATGTCTTTTGCGCAC--------------------------------------------------------TTCTTGTTTCCTGGGCGGGTTC------------------------------------------GCCCGCCACCAGGACCCAACCATAAACCTTTTTTTGTAATTGC----AATCAG--CGTCAGT----ACACAAT-GTAATTA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TACGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTA----CCCTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCTTTGT-CTCTCACG-----------AGACTCGCCTTAAA-ATGATTGGCAGCCGGCCT--ACTGGTTTCGGAGCGCAGCAC----AA-------------------------------------------------------------------------------------------------------------------------------- Didymella_applanata_AJ428534 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTAA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGCTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAAAC-TTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAA------------------- Didymella_bryoniae_EU167573 CATT-ACCT-AGAG-TTGCGGGCTTT-GCCTGCCATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTTC-GCCCGCCGATTGGACAAAA--CTTAAAC--CCTTTGTAATTG------AAATCAGCGTCTGA----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGC-----AGACTCGCCTCAAA-ACGATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCACAACGACGACGTCCAAAAAGTAC----------ATTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Didymella_exigua_EF192139 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTA-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-AGCCTCTGCGCGC-----AGACTCGCCTCAAA-AGAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCGGAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGA------------------------------------- Didymella_fabae_EU167566 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ATTCAGAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Didymella_lentis_AY131201 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGCTC-GCCCGCCGATTGGAC-AAA--TTTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCCTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTTTAACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Didymella_ligulicola_AY157886 ------CCT-AGAG-TTGCGGGCTTT-GCCTGCCATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCGCCGGCTGGACAACA--CTTAAAC--CCTTTGTAATTG------AAATCAGCGTCTG-----AAAAAAC-TTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGC-----AGACTCGCCTCAAA-ACGATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGA-CAACAAAACGACGACGTCCAAAAAGTAC----------ATTTTTT-ACACTC------------------------------------------------------------ Didymella_phacae_EU167570 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCCGCTACC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC-AAA--ATTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Didymella_rabiei_EU167600 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCCGCTACC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC-AAA--ATCAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Dothidea_sambuci_DQ491505 CATT-AAAAGAATGTTGGGGGACCCGGGGCAACCCGGACAATCCCCTTATACT---------------------------------------------TCCCACCCTTTGTTGTTATAACTAC--------------------------------------------------------CTTGTTGCTTTGGCGGGACCGTTCGG--TCATCCGAGCGCACCAGTCTTCGGACAGGTGAGCGCCTGCCA---GAGTCCAA--CCAAA----CTCTTGTTTTTA-------ACCAGTCGTCTGAGTATAAAATTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAC----CACTCAAGCACC-------------------------------------GCTTGGTATTGGG------------------------------------------CATCG------TCCGCCGAAAGGC-----GGGCGTGCCTCGAA-GACCTCGGCGGGGTTTCT---CCAACTTC-GGGCGTAGTAGAGTTAAATC-GAACGTCTTATAAGCTTGGTGGGACTCCATTGCCGTTAAA--------CCTTTTATTTTCTAGGTTGACCTCGGATCAGG-TAGGGATA----------------------------------- Dothiora_cannabinae_AJ244243 CATT-AAAG------------------------------------------------------------------AGTAAGGGTCTCTGGCCCGAACCTCCAACCCTCTGTCGTTATAACTAC--------------------------------------------------------TTCGTTGCTTTGGCGGGACCGCGAAGGTTCTCCCGAGCGCGCCAGTCTTCGGACAGGCGAGCGCCCGCCA---GAGTCCAA--CCAAA----CTCTTGTTTTAA-------ACCAGTCGTCTGAGTATAAAATTT-TAATTAAATTAAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAC----CACTCAAGCACC-------------------------------------GCTTGGTATTGGG------------------------------------------CATCG------TCCGTCGAAAGAC-----GGGCGTGCCTCGAA-GACCTCGGCGGGGTTTCT---CCAACTTC-GGGCGTAGTAGAGTTAAATCAAAACGTCTTATAAGCTTGGTGGGACCTCATTGCCGTTAAA--------CCTTTTATTTTTCA-------------------------------------------------------------- Kirschsteiniothelia_aethiops_AF377283 CATT-ATCGAGAGCGGCGGTGCCCTAGCCATGGGCCCGATCCGT------------------------------------------------------CCCACCCCCTGTCTACCTG------------------------------------------------------------CCTCTGTTGCCTCGGC-------------------------------------GGACGGGCGCGCTCGTTCGTCGAAGGCCCCCCCTAACAACGCTTTAATGGTGG------------GGTTCTGAGTGTCGATTTT-AATAGCA-CTAAAACTTTCAACAACGGATCTCTTGGCTCTGGCGTCGATGAAGAACGCAGCGAAACGCGA-TAGGTAATCTGAATTGCAGAATTC-AGCGAATGATCGAATCTTTGAACGCACATGGCGCCCTCTGGTATCCCGGGGGGCACGCCTGTCCGAGCGTCATCACAC----CCCTCAAGCCTC-------------------------------------GCTTGGTATTGGG------------------------------------------CCCCGCCGCGTCGT---------------CGGCGGGCCTTAAA-CGTGCTGGCGGCGTC-----GTGGGCCCCCGAAGCGCACAT------------GGTCTCGAACCGCGCGCGAGGACGGCCGCGGCGCCCGCCACGGTGAACCCTCCACCCTCGTATCGACCTCGGATCAGGC------------------------------------------- Lophiostoma_arundinis_AJ496633 CATT-ATTGTCGTCTACGTGGCCTTTGGGCCCCAAACAC-----------------------------------------------------------AATAACCCTTGACTTTTTTT-GTGC----------------------------------------------------ACCCTTTGTTTCCTCGGC-----------------------------------------AGCTTT-GCCTGCCAGCGAGGACCCC--CCAAAAAC-CTTTTGCAATCT----TAGTATAACAATCTG------AAAACA-AACAATA-TTAAAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTACA----AATTCAAGCTCA-------------------------------------GCTTGGTGATGGG------------------------------------------TGTCT-GTCC-CGCCTTTGCGCGT-----GGACTCGCCTCAAATGCAGTTGGCAGCTTGTTC--CTCGGCTCT-AAACGCAGCAG----ATTTG---CGTCGA----GCGTCGGGCGGACGGGCTCTCCAGTAAG-----------CAAACCCCACAAATTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAA------------------- Massarina_bipolaris_AF383956 CATT-ATTGTGAGGGCTTCGGCCCATTGCATAAT----------------------------------------------------------------GCAAACCCTTGCCTTTTTAGTAGTA------------------------------------------------------TCTCTGTTTCCTCGGC----------------------------AGCTTAGTGCTAACAGCTTTGCCTGTCAAAGGACCCCTAAAACAAAA---CCTTTGTAATCT------CGATCATGTTCAG------AAAAAC-TCAATTT-TTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTAAA----ACCTCAAGCACG-------------------------------------GCTTCGTGGCAGGGACCCTAAGAGGGACCTACCCGTAGCCCAGCTTGGTGATGGGCGCCT-GTCC-CGCCGTGGTGCGC-----GGACTCGCCTCGAATGCAGTTGGCAGCCCCAAT--ACCTCCTCAATCGGATCCGAAGTAGAATTC---GCAGGCCGTGGGTGGTGGTGGCTCTCCAATGTAGGCAACCCGTAAAGCGTCTCCTCAA----------TCGGATCCGAAGTAAAATTCGCAGGCCGTGGACGGCGG---------------- Massarina_eburnea_AF383958 CATTACAAATTAGCGCTGCGGCCTCCGGGTCGCTGCC-------------------------------------------------------------TAAACCCCTTGTCTATGA---GTAC------------------------------------------------------TCGTTGTTCCCTCGGC-----------------------------------------GCACCTGGTGCGCCGGCTGGAACCAC--CTAAA----CCCTTGCATCTA----AGCATTAAATATCTGAT---AACAAAC-CAATCTA-TTACAACTTTCAACAATGGATCTCTTGGTTCTGGCGTCGATGAAGAACGCAGCGAAATGCGA-AACGTAGTGTGAATTGCAGAATTC-CGTGAATCATCGAATCTTTGAACGCACATTGCACTCCCTGGTATTCCGGGGAGTATGCCTGTTCGAGCGTCATTGGAA----ACCTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-GTCC-CCTCTTCGGGGG------GGACTCGCCCCAAA-GTCATTGGCAGCGGTCGT--GCCAGCTTC-TCGCGCAGCAC----ATTTG---CGCTTCTCGAAGTCCTGGTGGACACGCGTCCAGCAAG------------CTCTCTTTATGACTTGACCTCGGATCAGG?T?GGGATACCCGCT----------------------------- Massarina_ramunculicola_AF383962 CATT-AGGG----------------------------------------------------------------------------------CTTCTTCTTCCACCCTTGTCTACTAGATGTTC---------------------------------------------------TTGTTTTGCTCCCTCCGGC-----------------------------------------TGGCCC------CCGGCAGGGCCCTT--TTAAAACCCGACATGCTTTAA-----GCAGCCTATCTTCTGATTTTTAAAGC-CTCTTAT-TTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAACTGCGA-TAAGTAGTGTGAATTGCAGAATTCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCTTGGTAATCTGAGGGGCATGCCTGTTTGAGCGTCATTGACACCCCCCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-GTCC-CTTCAG------------GGACTTGCCTAAAG-GTTATTGGCAGCCTTATA--CTTCCCTTC-TTGCGTAGTAG----CGTAG---CGCTTGAGGGAGTGATAGTGGTTTGGCA-TCCAGCAAGTGCACTGTTTTTTTTTTACATTATTTGACCTCAAATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATA-------- Montagnula_opulenta_AF383966 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACCCTTTTTGCATCTA------GTAATACACCTGTTCTGAAACAAAT-TTAATCG-TTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACA----CCCTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-GTCC-CGCCTCCGCGCGT-----GGACTCGCCCCAAA-TCCATTGGCAGCGTTCCT--TGCCCCCTC-TCGCGCAGCAC----GATGC---GCTTCTTGCGGGCGGCTCCGGGGC-GCGTTCCACCAAG-----------ATGACCACCGTCTTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAA------- Munkovalsaria_appendiculata_DQ435529 CATTAAACGTTTTGGCCGTAACAAGC------------------------------------------------------------------------CTTAAACCTTATCTATGC---GTAC---------------------------------------------------CTTTACATTCTCCTTCGGC----------------------------------------GGGGTAACGCCCGCCGTCGGAA-------CAACAAACCCGTTTGCATCTA------GTATTCTACCAGTTCTGATAAAAAT-TCAATCG-TTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACA----CCCTCAAGCTAT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-GTCC-CGCCTCCGCGCGC-----GGACTCGCCCCAAA-TCCATTGGCAGCGGCCCT--TGCTCCCTC-CCGCGCAGCAC----ATTGC---GCTTCTCGAGGGCGGCTCCGGGCCTGCGACCCACGAA------------GATAACCCGTCTTTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Ophiosphaerella_herpotricha_U04861 CATT-ACACGATAGTACAGGCCCCAAGTGTAGAACAAACTACGCAGACGGGTTATGTC----------------------------------------TATTACCCTTGTTTATTGA--GTAC-------------------------------------------------------CTATGTTTCCTTGGT-----------------------------------------GGGCTT-GCCCGCCAAAAGGACACCCTATTAAA----CCTTTTTATTTT------CAATCAGCGTCTG-----AATAAAA-ATAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCTACTCCACTGCGTTT-----GGACTCGCCTTAAA-GTAATTGGCAGCCTATAT---TTGGTTTT-GAGCGCAGCAC----ATTTT---GCGTCTTACTGCCAGTTATATAGGCACCCAATAAGC-------------CTTTTTATCACGTTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phaeosphaeria_eustoma_AF439479 TGTT-------------------------------------------------------AGTCTGTATAGCGCAAGCTGATGAGCAGCTGGCCTCTTTTATCACCCTTGTCTTTTGC--GTAC-------------------------------------------------------CTACGTTTCCTCGGT-----------------------------------------AGGCTT-GCCTGCCGATTGGACAAAC--CTATAA---CCTTTTAAATTT------CAATCAGCGTCTG------AAAAAC-TTAATAA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCCTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCCTCTCCCTTGTGTTT-----GGACTCGCCTTAAA-ATAATTGGCAGCCAGTGT--TTTGGTAATGAAGCGCAGCAC----AAGTCGCGATTCTTATTAAATACTTGCGTCCACAA----------------------GCCTTTTTAACTTTTGACCTCGGATCAGG-------------------------------------------- Phoma_exigua_EU167567 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTACCATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC-AAA--CTTAAAC--CCTTTGTAATTG------AAATCAGCGTCTG-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAAGTAC-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_glomerata_EU273521 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAAAC-TTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCAGAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_herbarum_AF046018 CATT-ATCGTGGA-CTTCGGCTCCTTCGAG--------------------------------------------------------------------GGAGAACCTTGCCTTTTCGA-GCAC-----------------------------------------------------CTGTTTGTTTCCTCGGC-----------------------------------------AGGCCC-GCCTGCCAACGGGGACCAT--TTAAA----CTCTTGCAATCAACCTGAACAAAATCGTCTGAAC--AAAAAAA-ATCTAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Phoma_herbarum_AF218792 CATT-ACCT-AGAG-TTGCGGGCTTT-GCCTGCCATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCACCGGCTGGACAACA--TTCAAAC--CCTTTGTAGTTG------CAATCAGCGTCTG-----AATAAAC-TTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCCTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGC-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAAGTAC----------ATTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCCCGTCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_herbarum_AY293802 CATT-ATCGTGGAGCTTCGGCTCCTTCGAG-------------------------------------------------------------------GGAGAACCCTTGCCTTTTCGA-GCAC-----------------------------------------------------CTGTTTGTTTCCTCGGC-----------------------------------------AGGCCC-GCCTGCCAACGGGGACCAT--TTAAA----CTCTTGCAATCAACCTGAACAAAATCGTCTGAAC--AAAAAAA-ATCTAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTTACA----CCTTCAAGCTCC-------------------------------------GCTTGGTGTTGGG------------------------------------------TGACT-GTGGCCCCTCG-GGG--------CCACTCGCCTCAAA-GTCATTGGCGGCCGGTTT--GTAGGCTTC-GAGCGCAGCAC----ATGTG---CGTCTTCGT-GCCTCGCGGATCGGCTCCCAGAAGCTAA-----------ATCTC--ACATTTTTGACCTCGAATCAGG-TAGG--------------------------------------- Phoma_herbarum_AY293803 CATT-ACCTAAGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCATT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTA--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_herbarum_AY864822 CATT-----------------------------------ACCTGGCCTTGGGCCGCTCCTGCATGGCGGTCACGCCTTCGGGGGTGCTTAGCCCTTGACTATCACCTTGACTATGC---GTAC----------------------------------------------------CTTTGTTGTTTCCTCGGC-----------------------------------------AGGTCT--CCTGCCAGTGGAACCCTC--TCATAACCCTTTTTGCATCAG---------CATCGAACTGAAA--CAAACCA-CAATTAT-TTACAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATTTAAC----CCCTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-GTC--CCGCCTCGTGCGC-----GGACTCGCCTAGAA-GACATTGGCAGCGGTCGT--GCCAGCTTC-TCGCGCAGCAC----ATTGC---GCTTCTCGA-GGCTCCGGCGGATCAGCGTCCAGCAA-------------GTCCACCCCCAGTTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_herbarum_DQ132841 CATT-ACCT-AGAGTTTGTGGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CCTTTGCAGTTG------CAATCAGCGTCTG------AAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCATT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGTTTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTA--ACACTC-TGACCTCGGATCAGG------AGGACC-------------------------------- Phoma_herbarum_DQ865105 GACT-ACGT--------------------------------------------------------------------------------------------------------------GCAC---------------------------------------------------??TTTGTTGTTTC?TCGGC-----------------------------------------AGGTC--ATGTGCCGCCAGGAACGCC--CCGAAACC-TTTTTGCAATAG------CATCTAAACTTCATGAAAACAAACC-AAATCAT-TTACAACTTTTAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGC?AAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATTTACC----CCCTCAAGCTCC-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTACTGTC--CCGCTTCGCGCGCA----GGACTCGCCCCAAA-GGTATTGGCAGCGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------- Phoma_herbarum_EU082106 --TT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTTACGTTTCCTCGGT-----------------------------------------GGGTTC-GCCCACCGATTGGAC-AAA--TTTAAAC--CCTTTGCAGTTG------AAATCAGCGTCTG-----AAAAAACTTTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT---------CCTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACATCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_medicaginis_EU167575 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------TTA-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC-AAA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAACT-TTAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_multirostrata_EF585396 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTACCATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTCC-GCCCGCCGATTGGAC-AAA--CTTAAAC--CCTTTGTAATTG------AAATCAGCGTCTG-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTTTGCGTGT-----AGACTCGCCTTAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ACTCATAACGACGACGTCCAAAAAGTAC-----------TTTTT--ACACTCTTGACCTCGGATCAG--TAAGTGTAGCT--GCCATCTC---------------------- Phoma_pinodella_EU167565 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ATTCAGAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Phoma_sojicola_EU167568 CATT-ACCT-AGAG-TTGTAGGCTTT-GCCTGCTATC-------------------------------------------------------------TCTTACCCATGTCTTTTGA--GTAC------------------------------------------------------CTT-CGTTTCCTCGGC-----------------------------------------GGGTTC-GCCCGCCGATTGGAC--AA--TTTAAAC--CATTTGCAGTTG------CAATCAGCGTCTG-----AAAAAAC-ATAATAG-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTA----CCTTCAAGCTCT-------------------------------------GCTTGGTGTTGGG------------------------------------------TGTTT-GTCT-CGCCTCTGCGCGT-----AGACTCGCCTCAAA-ACAATTGGCAGCCGGCGT--ATTGATTTCGGAGCGCAGTAC----ATCTC---GCGCTTTGC-ATTCAGAACGACGACGTCCAAAAGTACA-----------TTTTT--ACACTCTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Pleospora_herbarum_DQ491516 ------------------------------------------------------------------------------------------------------ACCCATGTCTTTTGC--GCAC------------------------------------------------------TTCTTGTTTCCTGGGC-----------------------------------------GGGTTC-GCCCGCCACCAGGACCAAACCATAAACC--TTTTTGTAATTG------CAATCAGCGTCAGT----AAACAAT-GTAATTA-TTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TACGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCAAAGGGCATGCCTGTTCGAGCGTCATTTGTA----CCCTCAAGCTTT-------------------------------------GCTTGGTGTTGGG------------------------------------------CGTCT-TTGT-CTCTCACG----------AGACTCGCCTTAAA-ATGATTGGCAGCCGACCT--ACTGGTTTCGGAGCGCAGCAC----AA-------------------------------------------------------------------------------------------------------------------------------- Preussia_minima_DQ468026 CATT-ATCGTTGGGCTTCGGCCCATT{CG}GAGA-------------------------------------------------------------------TAACACCCTTGCCTTTTTGA-GTAC-----------------------------------------------------CTTTTCGTTTCCTCGGC-----------------------------------------AGGCTC-GCCTGCCAACGGGGACCCT--TCAAAAC--GCTTTGTAGTAC------CTGTAACTGTCTGAT---ACAACAA-GCAAAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTAAA----CCTTCAAGCTCA-------------------------------------GCTTGGTGATGGG------------------------------------------TGACT-GTCCCCCG---------------GGACTCGCCTCAAA-AACATTGGCGGCCGGTAC--ATTGGCTTC-GAGCGCAGCAGAAA----------------------------------------------------------------------------------------------------------------------------------- Protoventuria_alpina_EU035444 CATT----------------------------------------------------------------------------------------------AATAAACCTAGTCGTTCGCGTACACAGGGGCAACCCTCGCGCGATGTCAGCAATACCTAGGTCACCCTTGAATAAACTACCCTTGTTGCTTTGGC---------------------GGGCCGCCCCTCGGGGCCAGCGGCTTCGGCTGCTGCGCGCCCGCCAGAGGACCACAACTCTTGTTTTTA---------GTGATGTCTGAGTACTAT-----ATAATAG-TTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATAA--CCACTCAAGCCTTC-------------------------------------GCTTGGTATTGGG------------------------------------------GTTCGCGGCT-------------------GCGCGGCCCCTAAA-ATCAGTGGCGGTGCCT----GTCGGCTCT-ACGCGTAGTAA----TACTC---CTCGCGTCTGGGTTCCGGTAGGTTGCTTGCCAGCAACCCCTA-------AATTTTTTACAGGTTGACCTCGGATCAGG-TAGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Roussoella_hysterioides_AF009812 CATT-ATCG--------------------------------------------AAATCGCTCGCCTGCCAGTCCCCTACAAAGGGCTGTCAGCAGCGTTATCACCCTTGCTTTTT-GA-GTAC--------------------------------------------------------CTGTTTTTTTCCTC-----------------------------------------GGGTTC-GCCCGCCAGTGAGGGAAC---CCACAAAGAATTTTGCATTAA------AAATTTTCGTCTAGTCTAAAAACAA-CCAATAA-TCAAAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGACTAGCTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCATAGGGCATGCCTGTTCGAGCGTTATTTAAA----CCCTCAAGCCCA-------------------------------------GCTTGGTATTGGG------------------------------------------TGCTT-GTCC-TGCCTCCGGGCGG-----CGACTCACCTTAAA-TTCAGTGGCAGCCCGCATCCGCCGGCCGT-GAGCGCAGCAC----AAACG---CACTCA----AGTGCAGGTGGATCGGCTCTCCAGAAG------------CTCATTTTTCAGTTTAACCTCGGATCAGGTAGGATACCCGC-------------------------------- Venturia_carpophila_AF065849 -----ATGG---------------------------------------------------------------------------------------------GTTTCCCGCCTCCGGGCGCAA------------------------------------------------CTCCACC?TTTGCAACCGCGGCCCGGATTCGGCGCCTGGCGAGGACCACCCCCC--AGACGGGGGGCCCCGCCTGCCGGAATCAGCAA------------GCCCTGCCTAGA------AAATTGAAGTCTGAGG--AGAAAGC-CAA?CGA-A?AAAACTTTCAACAACGGATCTCTTGGTTCTGGCAACGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCACGCCTGTTCGAGCGCCATTTCTA----CCCTGGAGCCCC-------------------------------------GCTCTGTGATGGG------------------------------------------CCCCGTCCTCGC-----------------GGACGAGCCCGAAA-CCCGTAGGCGCCGTC-----GCCCGGCCCCGAGCGTAGCAAGAGAAATCC---CTCGCCCGGAGCGCCCGGCGG-TGGCCGCCCCGAAACC-------------CTTCCACAAG------------------------------------------------------------- Venturia_cerasi_EU035452 CATTAATGG---------------------------------------------------------------------------------------------GTTTCCCGCCTCCGGGCGCAA------------------------------------------------CTCCACCCTTTGTAACCGCGGCCCGGATTCGGCGCCTGGCGGGGACCACCCCCTCTACGC-GGGGCCCCCGCCTGCCGGAATTAGCCA------------GCCCTGCCTAGA------AAATCGAAGTCTGAGA--CAAAAGT-AAATGGA-ACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAACGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCACACCTGTTCGAGCGCCATTTCTA----CCCTGGAGCCCC-------------------------------------GCTCTGTGATGGG------------------------------------------CCACGTCCTCGC-----------------GGACGGGCCCGAAA-CCCGTAGGCGCCGTC-----GCCCGGCCCCGAGCGTAGCAAGAGAAATCC---CTCGCTCGGAGCGTCTGGCGG-TGGCCGCCCCGAAACC-----------TATTTCTACAAGGTTGGCCTCGGATCAGG-TGGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Venturia_crataegi_EU035455 CATTAATGG------------------------------------------------------------------------------------------------GCCAGCCTCCGGGCGTAC------------------------------------------------CCCCACCCTTTGTAACCGCGGCCCGGATTCGGCGCCTGGCGGGGACCACCCCCCGCTCGCGGGGGGCCCCGCCCGCCGGAATTAGCCA------------GCCCTGCCTAGA------AAACTGAAGTCTGAGA--ACATGTC-AAAACAA-ACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCAACGATGAAGAACGCAGCGAAATGCGA-TAAGTAATGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCACACCTGTTCGAGCGCCATTTCTA----CCCTGGAGCCCT-------------------------------------GCTCTGTGATGGG------------------------------------------CCCCGTCCCCGC-----------------GGACGGGCCCGAAA-CCCGTGGGCGCCGTC-----GCCAGGCCCCGAGCGTAGCAAGAGAAATCC---CTCGCTCGGAGTGCCCGGCGGCCGGTCGCCCCGAACCC-----------AAATCATACAAGGTTGGCCTCGGATCAGG-TGGGGATACCC--GCTGAACTTAAGCATATCAATAAGCGGAGG Westerdykella_cylindrica_DQ491519 CATT-ATCGTGGGGCTTCGGCCTCTATCGG--------------------------------------------------------------------GAGAATCCTTGCCTTTTGA--GCAC-----------------------------------------------------CTTTTTGTTTCCTCGGC-----------------------------------------AGGCTC-GCCTGCCAATGGGGACCCC--CTCAA----CTCTTGCAATAA-----CATGTAATTGTCTGA----ACAAAAA-CAACAAA-TCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTTCGAGCGTCATTTACA----ACCTCAAGCTCA-------------------------------------GCTTGGTGATGGG------------------------------------------TGACT-GTGGCCCCCCGCGGG--------CCACTCGCCTCAAA-GTCATTGGCGGCCGGTAC--GTAGGCTTC-GAGCGCAGCAC----ATTTG---CGTCCTCGT-GGCTCTCTGATCGGCTCCCAGAAG---------------CTATTTCTCATGTTTGACCTCGAATCAGG-TAGGGATACCC--GCTGAACTTAAGCATA-------------- Wettsteinina_lacustris_AF383969 CATTAAACATACATGGTCGTCGGCCACTCCCGGGGCAGGCTGGGACCATCGTTTCGACGATGGTCCCCGTCCGCCCCCGGCGGGTGCTCAGCCGTCGCTCTTTACCTTGACTATGC---GCAC---------------------------------------------------CTTTTGTTGTTTCCTCGGC-----------------------------------------AGGCCT--CCTGCCGCTTGGAACCCC--ATAAA----CCTTTGTATAAG------CATTAAACTTCTGAAA--CAATACA-AAATTAC-TTACAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCCAAATGCGA-TAAGTAGTGTGAATTGCAGAATTC-AGT{GT}AATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTAAA----CCCTCAAGCCTTCTGGGTATTGTACCGCCTCCGCGCGGCACTCTGCCCGGCTTGGTGTTGGG------------------------------------------CGTCT-GTC--CCGCCTCGCGTGC-----GGACTCGCCCCAAA-TGCATTGGCAGCGGCCTT---CCAGCTTC-TCGCGCAGCAC----ATTGC---GTCCCGAGGTATGGCGAGGGCGAGCGTCCAGCAAGCAA---------------CCCCACAATTTGACCTCGG-------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-816; CODONPOSSET * CodonPositions (CHARACTERS = ITS_rDNA) = N: 1-816; END; BEGIN TREES; TITLE Tb10462; LINK TAXA = Taxa1; TRANSLATE 1 Atradidymella_muscivora_EU817825, 2 Didymella_fabae_EU167566, 3 Phoma_pinodella_EU167565, 4 Ascochyta_pisi_EU167557, 5 Didymella_phacae_EU167570, 6 Didymella_rabiei_EU167600, 7 Phoma_medicaginis_EU167575, 8 Didymella_bryoniae_EU167573, 9 'Ascochyta viciae-villosae EU167560', 10 Phoma_sojicola_EU167568, 11 Phoma_herbarum_AY864822, 12 Phoma_herbarum_AF218792, 13 Phoma_herbarum_AY293803, 14 Phoma_herbarum_DQ865105, 15 Phoma_herbarum_AY293802, 16 Phoma_herbarum_AF046018, 17 Phoma_herbarum_DQ132841, 18 Phoma_herbarum_EU082106, 19 Phoma_multirostrata_EF585396, 20 Phoma_exigua_EU167567, 21 Ophiosphaerella_herpotricha_U04861, 22 Didymella_ligulicola_AY157886, 23 Phoma_glomerata_EU273521, 24 Preussia_minima_DQ468026, 25 Phaeosphaeria_eustoma_AF439479, 26 Westerdykella_cylindrica_DQ491519, 27 Dothidea_sambuci_DQ491505, 28 Dothiora_cannabinae_AJ244243, 29 Pleospora_herbarum_DQ491516, 30 Dendryphiella_arenaria_DQ411539, 31 Montagnula_opulenta_AF383966, 32 Massarina_eburnea_AF383958, 33 Massarina_ramunculicola_AF383962, 34 Kirschsteiniothelia_aethiops_AF377283, 35 Venturia_carpophila_AF065849, 36 Roussoella_hysterioides_AF009812, 37 Munkovalsaria_appendiculata_DQ435529, 38 Wettsteinina_lacustris_AF383969, 39 Venturia_cerasi_EU035452, 40 Venturia_crataegi_EU035455, 41 Lophiostoma_arundinis_AJ496633, 42 Massarina_bipolaris_AF383956, 43 Protoventuria_alpina_EU035444, 44 Didymella_applanata_AJ428534, 45 Didymella_exigua_EF192139, 46 Didymella_lentis_AY131201; TREE Fig._1 = [&R] ((((((((((((((1,13),17),(4,(9,46))),((5,6),7)),(((((2,3,10),45),23),44),18)),((8,(12,22)),(19,20)))'Phoma/Ascochyta/Didymella Clade',(21,25)Phaeosphaeriaceae),(29,30)Pleosporaceae),(((15,16),26),24)Sporormiaceae),(36,(41,42))),(((11,(14,(31,37))),38),32)),33),((34,((35,39),40)),43)Venturiaceae),(27,28)'Outgroup - Dothideales'); END;