#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 24, 2021; 5:42 GMT TreeBASE (cc) 1994-2008 Study reference: Itagaki T., & Hirose D. 2015. RNase T2 of Mortierella spp. (phylum Zygomycota). Mycoscience, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17400] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=18; TAXLABELS 'Aspergillus oryzae AOR_1_1816174' Hericium_erinaceum_RNaseHe30 Hericium_erinaceum_RNaseHe38 'Laccaria bicolor LACBIDRAFT_235838' 'Laccaria bicolor LACBIDRAFT_186136' 'Laccaria bicolor LACBIDRAFT_187062' Mortierella_alpina_RNMal36 Mortierella_elongata_RNaseMel36 Mortierella_parvispora_RNaseMpa36 Mortierella_polycephala_RNMpo36 Mortierella_verticillata_RNaseMve36 Penicillium_chrysogenum_Pc06g00430 Pleurotus_ostreatus_RNasePo28 Pleurotus_ostreatus_RNasePo30 Pleurotus_ostreatus_RNasePo38 Rhizopus_niveus_RNaseRh Saccharomyces_cerevisiae_Ypl123cp Umbelopsis_ramanniana_RNaseUra26 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M30744] TITLE Mortierella_spp._Ribonuclease_T2; LINK TAXA = Taxa1; DIMENSIONS NCHAR=497; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Aspergillus oryzae AOR_1_1816174' MP--------STPSLPSMGMLALG-------AMQLAAGAVF--------EFPSCPKDIPFSCQNSTAVADSCCFNSPGGALLQTQFWDTNPPS------------GPSDSWTIHGLWPDNCDGSY--GQFCDKSREYS--------------------NITAILQEQ-----------GRTELLSYMKKYWPNYEGDDEEFWEHEWNKHGTCINTIEPSCY-----KDYSPQKEVGDYLQKTVDLFKGLDSYKALAKAGIVPDSSKTYKRSEIESALAAIHDGKKPYISCE-DGA-LNEIWYFYNIKGNAITGEYQPIDTL--TSPGCSTSG-IKYLPKKSENS----TASA-----------------WKFRSDKA---------------------------------------------------------------------------------------------------------SQSVRFN-------- Hericium_erinaceum_RNaseHe30 MV----AVYSIVVLAV-ASTVYAGWAP-------PVPGLPNT---FPN-IAACVDQPLEYSCENTTTLKNTCCSPTPGGLVLQTQFWDTYTGF------EKKGQLLPKDSWTIHGLWPDNCDGSF--EQYCDLSRQYDPA------PDDKTVPAYHGPGVDTFIKKF-----------GRKDLLDFMNKYWVSQGSPSASFWAHEFSKHATCTSTFDVACY----GPGYKKHQDVVDFYDAVVRAFHMFPTWTMLAASGITPSNKTTYSLSQFQTALKAQS-GAIPYLGCGHNGTVLQEVWYFNHVSGTEQFGRFKPVDST--TKSSCNATG-IHYYERSPKSVREVRDEL-------------------------------------------------------------------------------------------------------------------------------------------------- Hericium_erinaceum_RNaseHe38 MLRAFLTTSAILASVV-LANARLP-------GFSSADSHSL----FKR-ISSGCSTSGAASC-SSGSVGNTCCTESPGGLLLQTQFWDTNPST------------GPSNSWTIHGLWPDNCDGTF--EENCDSSRDYT--------------------NIAGLLQAQ-----------GASDTLSFMQEFWVDINGQNEQFWEHEWATHGTCMSTLEPSCL----PSGSPTGAEAVAFYQTVVKLFKSLPTYDWLSQEGITPSSSKTYTLSDFTSALNKAS-GFTPALNCN-GNT-VNQISWYFHLKGSIIDGNFVAIDTP--ASGSCPSSG-LKYPLKSGSSTSTSAGTSPTGSPGGLPSKATISALTSSGSSLGG-LLSAGKWSTQ-TPGTYT----ISGSSNSFTLTSSKGACAV---TSGEFAC----G-GSSSSTFSAVTSGSNLLLAFQGSTAFSSDASPSGQAQETVF----TGSSHSVQFSLTLIST-- 'Laccaria bicolor LACBIDRAFT_235838' MR----ATAVVLASVI-GAALASP-------SPAQIVLNPLQ---LST-PLSSCPANGPISCHNSSRIPDLCCFESPGGLLLQTQFWDTHPST------------GPEDSWTIHGLWPDNCDTTF--NENCDPSRAYT--------------------DIASLLTDN-----------GATDTLNFMETYWVDMHGENEQFWEHEWSKHGTCMSTLNPQCL----PSGSPDGFEAVLFFQTVVSLFQSLPTYTWLANEGITPSHDRTYTLSELLSALKRASGGIEPALDCK-SGA-LNAVSWYFNVKGSIADGTFVPINAP--KHGDCHSSSRIKYLPKTRH----------------------------------------------------------------------------------------------------------------------------------------------------------- 'Laccaria bicolor LACBIDRAFT_186136' MR-----SAVLLASFV-STALASP-------FLGQTDILGLF---KRS-VSSGCSTTGPASCHNTSVVSNLCCFEAPG-------FWDTNPST------------GPTNSWTIHGLWPDNCDTTF--SSNCDPSRAYT--------------------NVAGLLTAN-----------GASDTLAYMQTYWVDINGNNEAFWEHEWAKHGTCMSTLKPACL----PSGSPTGLEAVLFFQTVVRLFQTLPTYTWLANVGITPSTSATYTLSTLTSALKTASGGFTPALDCT-SGA-LNGISWYFNLKGSVIDGTFVAIDAP--LAGSCPSSG-IKYPPKSGGSTVRIIDFSA---PASLPTKATIKAL-RSGSAVGG-LLSLATWSTQ-TLATFT----ISGTSSSFTMTSSKGNCGV---SGGQLAC----GSGVSLTSFSAVSSGSNILLASGGSTSFSSDGIPSGTTVYTVY----TGSGHANGYTLSIVGS-- 'Laccaria bicolor LACBIDRAFT_187062' MI--------TTLTVI-AFSVSVAQGS----IFGNQLSIPNT---SPN-LTACVDQPSFFSCENSTAIKNTCCSPTPGGLVLQTQFWSTWTGL------EKKGQKLPKGSWTIHGLWPDNCDGSF--EQYCDLSRQYDPTPSPKVLPNGIVVPIYKGPGVDTFIKQF-----------GRQDLLTYMENYWINQGAPNVDFWGHEFSKHATCTSTFDVACY----GPTYKKHQEVIDFFDATVRAFHQYPTFDMLAAAGITPSNKTSTTLTKLQNAIKSQT-GAVPYFGCSNNGTVLSEVWYFSHVYGTEQFGTYKTLDSS--SPSSCSKDGPVWYHERTGASEREVRH---------------------------------------------------------------------------------------------------------------------------------------------------- Mortierella_alpina_RNMal36 ----------MKFTTI-AASLALA-------GLSVVSALPVDHTLFLR-RAVTCPTD-VLSCSSGSGGVDSCCLPEMGLILLVQQWY---PGL------------GPANEFTMHGLWPDTCSGGQGPANGCDSARIYT--------------------DIETRLQNY---------PKASDGFVNDMNTYWSSYKGDNNAFWAHEWSKHGTCVSNLAPACD-----TNYVQDQDVYEYFSKAMALRSQYNLYQALSTAGINPGS--TPNVADMHAAIKAAF-GVDAQINCN-SGV-LSEIWLFFNIKNH---DEYVATNPL--SIGSCKGA--ISYPVKGGSVQPSV--QPSV----------------QP--SVTK-------PPTT-STASVSVKPSATSPSGSIPTGKQTGSCP----TNGATVC----VAPGTSNQYSKCNQGTWILNQCKSGLVCYSDT---------------NIKTHC---------A-- Mortierella_elongata_RNaseMel36 ----------MKFLTI-AASLAVA-------ALSTVSALPVNMSAFQP-RALTCPAD-VLSCTSASAGLDGCCVPSMGLILLVQQWY---NGL------------GPANEFTMHGLWPDTCSGGQGPTNGCDAARVYT--------------------DIETRLQNY---------PGTPAGFLDEMNTYWSSYKGDNNAFWAHEWSKHGTCVSTLAPSCS-----SNYVQDQDVYAYFSTALALRKQYNLYNVLAGAGITPGS--TPDVDDMHSAIKAAY-GVDAQINCA-SGV-LSEIWLFYKVNSA---GTYTPVEAL--TSGSCSGA--ISYPVKSGTVPPTS-SVKPT----------------STTTKAST---------TT-TTRTTT----ATATPTGLPEGRQYGSCS----TNGATVC----VKNGSSNQYSKCNSGTWILNQCKSGLVCYSDT---------------VTSTHC---------A-- Mortierella_parvispora_RNaseMpa36 ----------MKFMTL-AASVALA-------ALSLTSARPM----LAA-RQATCPAN-VLSCSSASSGIDGCCLPTMGTLLLVQQWY---TTL------------GPSNQFTMHGLWPDTCSGGQGPSNGCDSSRVYT--------------------DVQTRLENY---------SGTGASIMDDMNTYWGSYTGDNNSFWSHEWSKHGTCVSTLAPTCH-----SDWVQDQDVYTFFSTALGLRKQYDLYAALANAGITPGS--NPNVSDMHAAIQTAF-GVDAEINCA-SGA-LSEIWLTFNIQNG---NQYVLGNAL--SQGSCSGS--ISYPEKSGSPVTVPSSTTGPIS--------------HSTTQP-----------ST-PT-STS----GSGSGSGLPSGRQTGSCS----TNGATVC----VSSGSSNQYSKCNSGSWNLNQCKKGLVCYSDT---------------QTSTHC---------A-- Mortierella_polycephala_RNMpo36 ----------MKFTTI-AASLALA-------AMTVVSALPLSNSIFSR-RADTCPAD-VLSCTSGSEGVSTCCLPEMGLILLTLQWY---NGL------------GPADEFTIHGLWPDTCSGGQGPASGCDAKRVYD--------------------NIDTRLKNY---------PGTPAGFMDELNLYWASYKGDNNAFWAHEWSKHGTCISNLTPSCK-----SNYVQDEDVYAYFSKTLALRRQYNLYKVLADAGITPGS--NPDTTAMHTAIKNAY-GVDAQINCS-GGK-LSEIWLYFKVKNT---DQYVPVEPL--TKGSCKGF--IDYFVKDGSAQPPTTSTKPP----------------ATTTKT-----------TT-TT--------ATSPSGPIPTGIQSGSCP----TEGATVC----VSPGESNQYSKCNQGKWVLNQCKTGLKCHSDT---------------NIKTHC---------A-- Mortierella_verticillata_RNaseMve36 ----------MKFLSI-AASLAVA-------TLSVVSALPVRSSIFEK-R-DVCPAD-VLSCTSASSGVDTCCLPDMGLILLVQQWY---NGL------------GPADEFTMHGLWPDTCSGGQGPSSGCDAARVYN--------------------DIDSRLQNY---------PSTPAGFMDDMNTYWSSYNGDNNVFWSHEWSKHGTCVSTLAPSCS-----ANYVQDQDVYNYFSKALALRSQYNLYNALAAKNILPGS--NPNVADMHTAIKAAF-GVDAQINCL-SGV-LSEIWIFFRVQNG---DQYVPAAPL--TTGSCKGA--ISYPIKSGSVTPPT----PP----------------TSTTKT-----------ST-TAASAS----GTSPAGSIPTGKQSGSCS----TNGATVC----VSPGSSQYYSKCNQGTWVLNQCKSGLSCYSDT---------------QTTTHC---------A-- Penicillium_chrysogenum_Pc06g00430 ----------MFQSQSSKGMLALA-------AMGLITGSTA--------SLETCESSTPFSCSSSSA-EPTCCFNSPGGALLLTQFWDTDPST------------GPKDSWTIHGLWPDNCDGTY--EASCDSKRAYS--------------------NITAILQDQ-----------NLGDLVDYMDEYWVDMNGDNEDFWSHEWNKHGTCINTIEPSCY-----SDYKAQEEVGDYFQKTVELFKTLDTYKALDAAGITPSTSKTYSLSEIQEALTDMH-GASVYLGCS-SGE-LNEAWYFYNVKGNVVDGTYKAVETL--TDSGCPKTG-IKYLPK-------------------------------------------------------------------------------------------------------------------------------------------------------------- Pleurotus_ostreatus_RNasePo28 ML-----TVLFTASLLTASSLAGPISEAGRSLRGLVDSPAL----FPRGNECSASGNLPTSCGNTTAVENLCCFEHPGGLLLQTQFWDTEPAN------------GPADSWTIHGLWPDKCDGTY--DSFCDPSRDYK--------------------DISQVLNSN-----------DASDTLNFMKEYWLDRDGDHDKFWKHEWSKHGTCMSTIKPTCL-----SDTEHGADAAAYFDTTVKLFKDLPTHKWLADAGILPTDNQTFTYDALAEALKKGK-GVSPRIDCK-DQT-LKEVVWYFNVKGSAMAGEFIPIDAPEGKKGSCPKDN-IKYTPKSTKAK----GKKP-----------------KKGKKN-------------------------------------------------------------------------------------------------------------------------- Pleurotus_ostreatus_RNasePo30 MV----LRLSLAVTLA-ALSVTAVQAK-------SHRHIPDT---FSS-IASCVDEPSTFSCENTAPINNTCCSPTPGGLVLQTQFWSTWTGL------ERKGQLLPEKSWTIHGLWPDNCDGSF--EQYCDLSRQFDPTPSPAILPDGTVVPAWKGPGIDTFVAQF-----------GRQDLLDFMQKYWINQGAPNVDFWGHEFSKHATCTSTFDVACY-----QSYKKHQDVVNFFDAVVRAFHRYPTFSMLASAGIVPSNRTTYSLDSIQKALVSQT-GAIPFLGCQANGTVLTEVWYFSHVFGTEQYGAYKNVDST--TNSTCSKTAGIWYYERTKSSEREVRA---------------------------------------------------------------------------------------------------------------------------------------------------- Pleurotus_ostreatus_RNasePo38 ML-----RLIILVAAA-SAGLASP-------FFSQPFDLTTR---ADS-LTSSCSTTGSASCHNTSSVSNLCCFESPGGLLLQTQFWDTNPST------------GPSDKWTIHGLWPDNCDGTF--EQNCDPSRAYT--------------------NIASLLSSG-----------GASDTLSFMQTNWVDINGQNEQFWAHEWSTHGTCMSTLHTSCI----PSGSVRGTEAVAFFQTVVKLYKTLPTFDWLAGQGIRPSTTQTFTLATLTSALKTASGGFTPALDCS-SGA-LNQISWYFNLRGSIIDGTFVPINAP--KAGSCPSSG-IRYPPKSGSGT----PTTPPSNPGGLPARATIHAI-KSGSQIGG-LLSLGTWSTQ-TLATFT----LTGTASSFTMTSSKGNCGV---SGGSFSC----GSGVNPTTFSAVTSGSDLLLASGGSTAWGSDGTPSGSTVFTVF----TGSSHSQDYTLTIVGA-- Rhizopus_niveus_RNaseRh ---------------M-KAVLALA-------TLIG-----------ST-LASSCSST-ALSCSN-SANSDTCCSPEYGLVVLNMQWA---PGY------------GPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASS--------------------SIASVIKS------------KDSSLYNSMLTYWPSNQGNNNVFWSHEWSKHGTCVSTYDPDCY-----DNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGG--TYTATEMQSAIESYF-GAKAKIDCS-SGT-LSDVALYFYVRGR---DTYVITDAL--STGSCSGD--VEYPTK-------------------------------------------------------------------------------------------------------------------------------------------------------------- Saccharomyces_cerevisiae_Ypl123cp ----------MLLKNL-HSLLQLP-------IFSN---------GADKGIEPNCPINIPLSCSNKTDIDNSCCFEYPGGIFLQTQFWNYFPSKNDLNETELVKELGPLDSFTIHGLWPDNCHGGY--QQFCNRSLQID--------------------DVYYLLHDKKFNNNDTSLQISGEKLLEYLDLYWKSNNGNHESLWIHEFNKHGTCISTIRPECYTEWGANSVDRKRAVYDYFRITYNLFKKLDTFSTLEKNNIVPSVDNSYSLEQIEAALSKEFEGKKVFIGCDRHNS-LNEVWYYNHLKGSLLSEMFVPMDSL-AIRTNCKKDG-IKFFPKGYVPTFRRRPNKGARYRG----VVRLSNI-NNGDQMQGFLIKNGHWMSQGTPANYEL---IKSPYGNYYLRTNQGFCDIISSSSNELVCKFRNIKDAGQFDFDPTKGGDGYI-GYSGNYNWGGDTYPRRRNQSPIFSVDDEQNSKKYKFKLKFIKN-- Umbelopsis_ramanniana_RNaseUra26 M---------FKSTLL-SVVAATA-------MMLA----------VPS-VDAACSTT-ALSCSS-SASTNTCCTPKYGLVVLVQQWV---PGY------------GPSDAFTLHGLWPDACDGTYAPSNGCDSSREYT--------------------NVETIVQNY-----------GTSTLYSDMQTYWPSDAESNNDFWSHEWSKHGTCVSTLAPTCY----GSSYTQYEDVTDYLTKVLALRAQYDLYTALANAKITPGG--SYTYTAMQNAIKAAF-GVTAKIDCS-SGT-LSDIEINFNVKGT---STYVPVNT---TGSTCSGT--VKYPTK-------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; TITLE Mortierella_spp._Itagaki_ML; LINK TAXA = Taxa1; TRANSLATE 1 Mortierella_alpina_RNMal36, 2 Mortierella_verticillata_RNaseMve36, 3 Mortierella_elongata_RNaseMel36, 4 Mortierella_polycephala_RNMpo36, 5 Mortierella_parvispora_RNaseMpa36, 6 Rhizopus_niveus_RNaseRh, 7 Umbelopsis_ramanniana_RNaseUra26, 8 'Aspergillus oryzae AOR_1_1816174', 9 Penicillium_chrysogenum_Pc06g00430, 10 Pleurotus_ostreatus_RNasePo38, 11 'Laccaria bicolor LACBIDRAFT_186136', 12 'Laccaria bicolor LACBIDRAFT_235838', 13 Hericium_erinaceum_RNaseHe38, 14 Pleurotus_ostreatus_RNasePo28, 15 Saccharomyces_cerevisiae_Ypl123cp, 16 Pleurotus_ostreatus_RNasePo30, 17 'Laccaria bicolor LACBIDRAFT_187062', 18 Hericium_erinaceum_RNaseHe30; TREE tree1 = [&R] ; END;