#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 24, 2021; 5:33 GMT TreeBASE (cc) 1994-2008 Study reference: Kropp B.R. 2015. Cookeina cremeirosea, a new species of cup fungus from the South Pacific. Mycoscience, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18629] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=20; TAXLABELS Cookeina_colensoi_AF394038 Cookeina_colensoi_AF394040 Cookeina_colensoi_AF394531 Cookeina_colensoi_AF394532 Cookeina_cremeirosea_AS142 Cookeina_cremeirosea_AS210 Cookeina_indica_AF394029 Cookeina_insititia_AF394031 Cookeina_insititia_AF394032 Cookeina_sinensis_AF394027 Cookeina_sinensis_AF394028 Cookeina_speciosa_AF394003 Cookeina_speciosa_AF394010 Cookeina_speciosa_AF394018 Cookeina_tricholoma_AF394023 Cookeina_tricholoma_AF394025 Cookeina_venezuelae_AF394041 Cookeina_venezuelae_AF394044 Microstoma_floccosum_AF394045 Microstoma_floccosum_AF394046 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M34537] TITLE Cookeina_cremeirosea_Fig_1; LINK TAXA = Taxa1; DIMENSIONS NCHAR=759; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Cookeina_colensoi_AF394038 ---------------------GT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGCGC---TCC---GGCGCTCGGGC-TCC--GG---CCC------------------------CA-CTTTTTCCACACACCTCCGTGTATATG-----A-CCCAGTGTTGCTT--CCCGCCGCGCC-T-GCCGGCCGGCGGGGAGATCC---A-CGC--AAA--CTCCACTTT-GTA------CTGTCTGTCAGTCTGA-------GCGGC-TCAG--------TCCGCG-----AATCAAAAA-GTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAACA-----TCCTCCCCC-AGCGGCTTTGCTGCCGTCTTT---GGGGGGTCATGGCGGTGGA--GTGGCC--TCGC---GGCCG-TC--TCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGCGGACGTAGTGAAAAACC--TCTCGTCCGC---TT-GGCGTG----CCCAG-----TTATCCTGCCGC----GAACGCA-G-TATCTCAACGAT-----------AT-GGACCTCGGA-TCAGGTAGGGATACCC--------------------------------- Cookeina_colensoi_AF394040 ------------------TCCGT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGCGC---TCC---GGCGCTCGGGC-TCC--GG---CCC------------------------CA-CCTTTTCCACACACCTCCGTGTATATG-----A-CCCAGTGTTGCTT--CCCGCCGCGCC--GGCCGGCCGGCGGGGAGATCC---A-CGC--AAA--CTCCACTTT-GTA------CTGTCTGTCAGTCTGA-------GCGGC-TCAG--------TCCGCG-----AATCAAAAA-CTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGTGAACA-----TCCTCCCCC-AGCGGCTTTGCTGTCGTCTTT---GGGGGGTCATGGCGGTGGAA-GTGGCC--TCGC---GGCCG-TC--TCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGCGGACGTAGTGAAAAACC--TCTCGTCCGC---TT-GGCGCG----CCCAG-----TTATCCTGCCGC----GAACACA-G-TTTTTCAACGAT-----------AT-GGACCTCGGA-TCAGGTAGGGATACCCG-------------------------------- Cookeina_colensoi_AF394531 ------------------TCCGT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGCGC---TCC---GGCGCTCGGGC-TCC--GG---CCC------------------------CA-CCTTTTCCACACACCTCCGTGTATAT------AACCCAGTGTTGCTT--CCCGCCGCGCC-T-GCCGGCCGGCGGGGAGATCC---A-CGC--AAA--CTCCACTTT-ATA------CTGTCTGTCAGTCTGA-------GCGGC-TCAG--------TCCGCG---AACCAAAAACAAGTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAACA-----TCCTCCCCC-AGCGGCTTTGCTGCCGTCTTT---GGGGGGTCATGGCGGTGGA--GTGGCC--TCGC---GGCCG-TC--TCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTTGCCGTGGACGTAGTGAAAAACC--TTTCGTCCGCC---T-GGCGCG----CCCAG-----TTATCCTGCCGC----GAACG-TAG-TTTTTCAACGAT-----------AT-GGACCTCGGA-TCAGGTAGGGATACCC--------------------------------- Cookeina_colensoi_AF394532 -------------------CCGT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGCGC---TCC---GGCGCTCGGGC-TCC--GG---CCC------------------------CA-CTTTTTCCACACACCTCCGTGTATATG-----A-CCCAGTGTTGCTT--CCCGCCGCGCC-T-GCCGGCCGGCGGGGAGATCC---A-CCC--AAA--CTCCACTTT-GTA------CTGTCTGTCAGTCTGA-------GCGGC-TCAG--------TCCGCG---AATCAAAAACAAGTTAAAAACTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAACA-----TCCTCCCCC-AGCGGCTTTGCTGCCGTCTTT---GGGGGGTCATGGCGGTGGA--GTGGCC--TTGC---GGCCG-TC--TCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTTGCCGTGGACGTAGTGAAAAACC--TCTCGACCGC---TT-GGCGCC----CCCAG-----TTATCCTGCCGC----GAACA-TAG-TTTTTCAACGAT-----------AT-GGACCTCGGA-TCAGGTAGGGATACCCG-------------------------------- Cookeina_cremeirosea_AS142 -----------------TTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAAAA-GGCGCCCTC---GTGCGCTCGGGCTTC---GG--TCCGTCGTGCGCTCGGGCTTCGGTCCGTTTATTTTTTTCAAACACCTCTGTGTAC-CTTT---A-CCTTGTGTTGCTT--CCCGCCGCGC--TT--CGGCCGGCGGGAAGG-CC----TACCTTAAAA-CTCTTTTTGTTTA-------TGTCAGTCAGTCTGA-------GCGGCATCAG--------TCCGC-----AAATCAAACAAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAGAAG--CCCCTC-T--CCTCAGCGGTTTTGC-GCCGTCT----GGGGGGGTCATGGTGGAGGA--GCGTTTGC----------------TTCCC-GCTTAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGATA---TTCTCGTCCGG---TT-GGTGCT----CCCGG-----TTATCTAGCCG-TT--GAAGCTTTGCATTTTT-AT-CT-----------ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAACTTAAGCATATCAATAAGCGGAGGAA Cookeina_cremeirosea_AS210 ------------------TCCGT-AGGTGAACCTGCGGAAGGGATCATTAAAA-GGCGCCCTC---GTGCGCTCGGGCTTC---GG--TCC-G----------------------TTTATTTTTTTCAAACACCTCTGTGTAC-CTTT---A-CTTTGTGTTGCTT--CCCGCCGCGC--TT--CGGCCGGCGGGAAGG-CC----TACCTTAAAA-CTCTTTTTGTTTA-------TGTCAGTCAGTCTGA-------GCGGCATCAG--------TCCGC-----AAATCAAACAAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAGAAG--CCCCTC-T--CCTCAGCGGTTTTGC-GCCGTCT----GGGGGGGTCATGGTGGAGGA--GCGTTTGC----------------TTCCC-GCTTAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGATA---TTCTCGTCCGG---TT-GGTGCT----CCCGG-----TTATCTAGCCG-TT--GAAGCTTTGCATTTTT-AT-CT-----------ATT-GACCTCGGA-TCAGGTAGGGATAC-----T----------------------------- Cookeina_indica_AF394029 ----------------TTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAAAA-GGCCCCTTC---GTGCGCTCGGGCTTC---GG---CCCG------------------------TTCTTTTTTCAAACACCTCTGTGTAC-CTTT---A-CTATGTGTTGCTT--CCCGTCGCGC--TT--CGGCCGGCGGGAAGGCCC-----ACCTTAAAA-CTCTTTTAATTTTT------TGTCAGTCAGTCTGA-------GCGGCATCAG--------TCCGC-----AAATCAAACAAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA--CCCCTC-TCCTC--AGCGGTTTTGC-GCCGTCT----GGGGGGGTCATGGTGGAGGA--GCG---------------CTTGC--TCCCCGCTAAAAGACATCTGGCGGAGAGTCCGTGGACGCCGTGGACGTAGTGAGATA---TTCTCGTCCGG---TT-GGTGCT----CCCGG-----TTATCCTGCCG-TT--GAAGCTTGCTATTT---AT-CT-----------ATT-GACCTCGGA-TCAGGTAGGGATACCC--------------------------------- Cookeina_insititia_AF394031 ---------------GTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAAAA-GGCGC-TTC---TGGCGCTCGGGC-TCC--GG---CC-------------------------CATTCCCTTCTAAACACCTCTGCGTACTCTT----A-CCTTGTGTTGCTTT--CCGCCACGC--TT--CGGCTGGCGGGAAGGGCC----TCGC--AAA--CTCGATTTT-ATTT-----CTGTCAGTCAGTATG--------GCGGC-TCTG--------TCCGCG-----AATCAAACAAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAGAAA--CCCCT---CGCCC-AGCGGCTTCGC-GCCGCGT----GGGGCGGTCATGGCGGAGGAA-GCGGGCCAA------GGCTCGTC--TCCCCGCCCAAAGATATCTGGCGGAGAGCCCGTGGTCGCCGTGGACGTAGTGAGACA---TTCTCGTCC-G---TTTGGCGTG----CCCGG-----TTATCCTGCCGC----GA-CG------TTT-CAAC-TT-----CGACCTATT-GACCTCGGA-TCAGGTAGGGATACCC--------------------------------- Cookeina_insititia_AF394032 --------------GGTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAAAA-GGCGC-TTCC---GGCGCTCGGGC-TCC--GG---CC-------------------------CATTCTCTTCTAAACACCTCTGCGTACTCTT----A-CCTTGTGTTGCTTT--CCGCCACGC--TT--CGGCTGGCGGGAAGGGCC---A-CGC--AAA--CTCAATTTT-ATTT-----CTGTCAGTCAGTATG--------GCGGC-TCTG--------TCCGCG-----AATCAAA---CATAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATT-CCGGAGGGCATGCCTGTCCGAGCGTCGAAAAA--CCCCT---CGCCC-GGCGGCTTCGC-GCCGCACC----GGGCGGTCATGGCGGAGGAAA-CGGGCCAA------GGCTCGTC--TCCCCGCCCAAAGATATCTGGCGGAGAGCCCGTGGTCGCCGTGGACGTAGTGAGACA---TTCTCGTCC-G---TTTGGCGTG----CCCGG-----TTATCCTGCCGC----GA-CG------TTT-CAA---T-CT--CGACCTATT-GACCTCGGA-TCAGGTAGGGA-------------------------------------- Cookeina_sinensis_AF394027 --------------------------GTGAACCTGCGGAAGG-ATCATTAACAAGGCGCCCCC---GTGCGCTCGGGCCTC---GG---CCCGC----------------------CA-CCTCCT-CAAACACCT-TGCGTACTCTT----A-CC-TTTGTTGCTT--CCCGCCGCGCCCT--GGGCGGGGCGGGGAGGTCCGC--T--C--AAA--CTCCTTTCT-GTATT----GCCA--GT-AG-CTCAGTCGT-GCCGGC-TCAG--------TCCGCGCAAAACCTTAACC-AGTCAAAA-CTTTCAACAACGGA-TTTTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGTAA---CCCC--TCCCCCCCGCGGCTTTGC-GCCGCGGC----GGGGGGTCATGGCGGAGGA-GGCGGCAGGTCC-----GCCGGCC--TCCCCGCTCAAAGGAATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA--CGC-TCTCGTC-G-----T-CGGCCCCGCCCGGGCC-------TCC-GCCGC----CA-CA--CCCC----AGAC-TTACT--CGCG--ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAA-------------------------- Cookeina_sinensis_AF394028 ---------------------GT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGGCGCCCCC---GTGCGCTCGGGCCTC---GG---CCCGC----------------------CA-CCTCCT-CAAACACCTCTGCGTACTCTT----A-CC-TTTGTTGCTT--CCCGCCGCGCCCT-CGGGCGGGGCGGGGAGGTCCGC--T--C--AAA--CTCCTTTCT-GTATT----GCCA--GT-AG-CTCAGTCGT-GCCGGC-TCAG--------TCCGCGCAAAACCTTAACC-AGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGTAA--CCCCC--TCCCCCCCGCGGCTTTGC-GCCGCGGC----GGGGGGTCATGGCGGAGGA-GGCGGCAGGTCC-----GCCGGCC--TCCCCGCTCAAAGGAATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA--CGC-TCTCGTCCG-----T-CGGCCCCGCCCGGGCC-------TCCCGCCGC----GA-CA--CCCC----AGAC-TT-CT--CGCG--ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TG---------------------------- Cookeina_speciosa_AF394003 ------------------------------------AGGAGG-ATTATTAACAAGGGGCGCCCCCCCGGGGGCGCGCGCGG-GAGGG-CCCCTCGCGGCCC--------------TCCCTCCTCTCCAAACCCCTCCGTGTACGCTTAT--A-CCGGC-GTTGCTT-CCCCGCCGTGCC-TTGCCGCCGGCGGGGGAGGACC----T-CATGAAAA-TTCTTTTTTT--GTTT---CCGTCA-TCTGATTC----GTGGGCGGCGGCTCCGTCCGCGTCGGCCC---GA--GAAAC-TGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA--CCCCT----CCCCCGGCGGCTTTGC-GGCCGCCCG----GGGGGTCTTGGCGGAGGA--GCGGGCGCCCGACGGGCGCCGCC--TCCCCGCTCAAAGCCATCTGGCGGAGAGTCTGGGGTCGCCGTGGACGTCGTGAGCAATC--A-TCGTCCC-------GGCGCGCGCCCC-GG-----TTATCCAGCCG--TC-GA-CCG--CGTTTTT------------CCACCGATT-GACCTCGGA-TCAGGTAGGGACACCCGC-TGAACTTAAGCATATCAATAAGCCC----- Cookeina_speciosa_AF394010 ------------------------------ACTTTCGAAAG-ACTCATTAACA-GAGCGCTCCC---TGCGGCGCGCG-GG-GAGAG-TCCCGCGGCCCCGGCCCGGGCC----TCCCCCCCTCCTCAAAC-CCTCCGTGTACTCTTTTCTA-CCCGGCGTTGCTT-CCCCGCCGTGCC-TAGCCGCCGGCAGGGGAGGGCCTC-AT--G--AAAA-CTCTTTTTTATAGTTT---CTGTCATTT-GT-TCAGCGGTGGGCGCCGGCTCCGGCCGCGTCCGCC----GA-CCAAAC-TGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA--CCCCT----CCCCCGCCGGCTTTGC-GGCCGCGCC---GGGGGGTGTTGGCGGAGGA--GCGCG--CCCGACGGGCGCCGCC--TCCCCGCTCAAAGCCATCTGGCGGAAAGTCTGTGGTCGCCGTCGCCGTCGTGAA----CATTCCAATC--A----T-CGTCCGACCGGTGCGCCGCG-------GCGG--T--CC--AGCCGTT-GACCT-CTGTTTTTTCTCGCGATT-GACCTCGAAATCAGGTAG----------------------------------------- Cookeina_speciosa_AF394018 ---------------------------------------AGG-ATCATTAACA-GGCGCCCCC----TGCGGCGCG-CGG--GAGGG--CCCGCGGCTCCGGCCCGGCCC-----TCCCTCCTCTCCAAACACCTCCGTGTACGCTTTTCTA-CCCGGCGTTGCTT-CCCCGCCGTGCC-TTGCCGCCGGCGGGGGAGGGCC----T-CATGGAAA-CTCTTTTATTTTTTTGTATCTGTCA-TCTG-CTCAGTCACGGGCGGCGGCTCCGGCCGTGTCAGCC----GA--GAAAC-TGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAAAAA--CCCCT----CCCCCGGCGGCTTCGCGGCCGCCCG-----GGGGGTCTTGGCGGAGGA--GCGCGCGCCCGACGGGCGCCGTC--TCCCCGCTCAAAGCCATCTGGCGGAGAGTCTGTGGTCGCCGTGGACGTCGTGAGCATTCCAA-TCATCGTCC---T-GGCGGCGCGCCCCGG-----TTATCCAGCCG--T----A--------------------------------------------------------------------------------------------- Cookeina_tricholoma_AF394023 AAAAGTCGTAACAAGGTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTACGAAGGCGCCTCGC----GCGCTCGGGCTTC---GG---CCCGC----------------------CA-CCTTT-CCAAACACCTCTGCGTA--CTT----AAC-TTTTGTTGCTT--CCCGCCGCGCC-T-CGCGGCCGGCGGGGAGGTCCGC--T--C--AAA--CTCCTTTTTTGTATT----GGCA--GT-AG-CTCAGT-GC-GCCGGC-TCAG--------TCCGCGCAAAGATATAAACAAGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA--CCCCT-CTCCCCC--GCGGTTTTGC-GCCGCGGC----GGGAGGTCATGGCGGAGGA--GCGGCTGGTCTT----GCCG-CC--TCCCCGCTCGAAGGCATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGATAC---TCTCGTCCG-----T-CGGCCCCGTCCGGCCC-------TCCCGCCGC----GA-CA--CCCC----AGAC-TT-CT--CGCG--ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAACTTAAGCATATCAAT----------- Cookeina_tricholoma_AF394025 ---------------------GT-AGGTGAACCTGCGGAAGG-ATCATTACGAAGGCGCCTCGC----GCGCTCGGGCTTC---GG---CCCGC----------------------CA-CCTTT-CCAAACACCTCTGCGTA--CTT----AAC-TTTTGTTGCTT--CCCGCCGCGCC-T-CGCGGCCGGCGGGGAGGTCCGC--T--C--AAA--CTCCTTTTT-GTATT----GGCA--GT-AG-CTCAGTCGC-GCCGGC-TCAG--------TCCGCGCAAAGATATAAACAAGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATT-CCGGGGGGCATGCCTGTCCGAGCGTCGAGAAA--CCCCT-CTCCCCC--GCGGTTTTGC-GCCGCGGC----GGGAGGTCATGGCGGAGGA--GCGGCTGGTCTT----GCCG-CC--TCCCCGCTCGAAGGCATCTGGCGGAGAGCCCGTGGCGGCCGTGGACGTAGTGAGA--CAC-TCTCGTCCG-----T-CGGCCCCGTCCGGCCC-------TCCCGCCGC----GA-CA--CCCC----AGAC-TT-CT--CGCG--ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAAC------------------------- Cookeina_venezuelae_AF394041 AAAAGTCGTAACAAGGTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAACAAGCGCC--TCC---GGCGCTCGGGCTTC---GG---CC-------------------------CA-TCGTTTTCAAACCCCTCTGTGTATATG-----A-CCCAGTGTTGCTTT--CCGTCGCGCC-TGT-CGGCCGGCGGGAAGGTCCC--AT-GC--AAA--CTCCATTTT-GTT------CTGCCTGTCAGTCTGA-------GCGGC-TCAG--------TCCGC----AATTTCAATAA-GTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGATTTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATT-CCGGAGGGCATGCCTGTCCGAGCGTCGTGAACA--CCCT---CCCCC-AGCGGCCTTGC-GGGGTCGTCCTTGGGGGGTCATGGCGGTGGA--GGGGGTC-TCCC--TGGGACCGC-TTCCTCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGTGGACGTAGTGAAACACC--TCTCGTCCAG----T-GGCGCG----CCCAG-----TTATCCTGCCG-T--GGA-CACA-GCTTT-CCAACC-------------ATT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAACTTAAGCATATCAATAA--------- Cookeina_venezuelae_AF394044 AAAAGTCGTAACAAGGTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAGCAAGCGCC---CC---GGCGCTCGGGC-TCC--GG---CC-------------------------CA-TCAATCCCAAACACCCCCGCGTATATG-----A-CCCAGTGTTGCTT--CCCGCCGCGCC-TGT-CGGCCGGCGGGGAGATCCCCC---GC--AAA--CTCCATTTT-GTA------CTGTCTGTCAGTGTGA-------GCGGC-TCAG--------TCCGCG------ATCGAAAAAGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTTCTGCCGGAGGGCATGCCTGTCCGAGCGTCGTGAACA--CCCT---CCCCC-AGCGGCCCTGC-GCCGTCCTC---GGGGGGTCATGGCGGTGGA---GGGCCGGTCTCCCTGGGACCGCC-TCCCCGCCCAAAGGCATCTGGCGGAGAGCCTGTGGTCGCCGTGGACGTAGTGAAACACCCCTC--GTCCCG---TT-GGCGCA----CCCAG-----TTATCCTGCCGC----GAACACA-CCTTT-CCAACG-------------ATT-GACCTCGGA-TCAGGTAGGGATACGCAACTTAAG-----CATATCAATAAGCCCGGGA- Microstoma_floccosum_AF394045 AAAAGTCGTAACAAGGTTTCCGT-AGGTGAACCTGCGGAAGG-ATCATTAAAAACGTGCATCTC--GTGG-AT-GGCATT--GAGGCGTCCCTCGGGGCGCCTGTCGCCACG-------CTGTGATGAAACACCTCCGTGTACACTT----A-CTT-CTGTTGCTTT-CCCGCCCTTC--T----CCCGGGCGGGGAGAGCC----AAC-TTCAAAGCTCGTTATCATAT-------TGT-GGTCAG---CA-------------TGAGCGGCATTGTCCGCC---TTAAATATAAAAGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATT-CCGGGGGGCATGCCTGTTCGAGCGTCGTCAAACACCCCTT------CGAGGCG-TCTTCTGCTGAAGTCGTCGTCGGTT-ATGGCGGAGAA-TGTG----CC-GTTGTG-GCACTC--TCCC-GCCCAAAGCCATCTGGCGGAGAGCCCTGGTCTGGCGCCGGCGTAGTAGG-----TTTCTCGTTAAACAC--TCGTCGGAGCCTGTGGTCAGGTTATCCAGCCGCGT--CAAGAACA-CTTT--CCATG--------------TT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAACTTAAGCATATCAATAAGCCCCGG-- Microstoma_floccosum_AF394046 ----------------TTTCCGTTAGGTGAACCTGCGGAAGG-ATCATTAAAAACGTGCATCTC--GTGG-AT-GGCATT--GAGGCGTCCCTCGGGGCGCCTGTCGCCACG-------CTGTGATGAAACACCTCCGTGTACACTT----A-CTT-CTGTTGCTTT-CCCGCCCTTC--T----CCCGGGCGGGGAGAGCC----AAC-TTCAAAGCTCGTTATCATAT-------TGT-GGTCAG---CA-------------TGAGCGGCATTGTCCGCC---TTAAATATAAAAGTTAAAA-CTTTCAACAACGGATCT-TTGGTTCCCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATT-CCGGGGGGCATGCCTGTTCGAGCGTCGTCAAACACCCCTT------CGAGGCG-TCTTCTGCTGAAGTCGTCGTCGGTT-ATGGCGGAGAA-TGTG----CC-GTTGTG-GCACTC--TCCC-GCCCAAAGCCATCTGGCGGAGAGCCCTGGTCTGGCGCCGGCGTAGTAGG-----TTTCTCGTTAAACAC--TCGTCGGAGCCTGTGGTCAGGTTATCCAGCCGCGT--CAAGAACA-CTTT--CCATG--------------TT-GACCTCGGA-TCAGGTAGGGATACCCGC-TGAACTTAAGCATATCAATA---------- ; END; BEGIN TREES; TITLE Cookeina_cremeirosea; LINK TAXA = Taxa1; TRANSLATE 1 Cookeina_tricholoma_AF394023, 2 Cookeina_tricholoma_AF394025, 3 Cookeina_sinensis_AF394028, 4 Cookeina_sinensis_AF394027, 5 Cookeina_colensoi_AF394532, 6 Cookeina_colensoi_AF394531, 7 Cookeina_colensoi_AF394040, 8 Cookeina_colensoi_AF394038, 9 Cookeina_venezuelae_AF394041, 10 Cookeina_venezuelae_AF394044, 11 Cookeina_insititia_AF394032, 12 Cookeina_insititia_AF394031, 13 Cookeina_indica_AF394029, 14 Cookeina_cremeirosea_AS142, 15 Cookeina_cremeirosea_AS210, 16 Cookeina_speciosa_AF394018, 17 Cookeina_speciosa_AF394010, 18 Cookeina_speciosa_AF394003, 19 Microstoma_floccosum_AF394045, 20 Microstoma_floccosum_AF394046; TREE Fig._1 = [&R] (1:0.002008,2:0.001891,((3:0.002088,4:0.007669):0.043002,((((((5:0.012636,6:0.009398):0.016531,(7:0.008324,8:0.011845):0.004404):0.022434,(9:0.043808,10:0.051902):0.022346):0.075148,(11:0.017393,12:0.004305):0.068218):0.021335,(13:0.02698,(14:0.006551,15:0.002277):0.024929):0.065984):0.018672,(((16:0.044534,17:0.146655):0.022184,18:0.064189):0.1968,(19:0.00185,20:0.001637):0.324735):0.035162):0.088986):0.025475); END;