#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 09, 2025; 8:10 GMT TreeBASE (cc) 1994-2008 Study reference: Cooke D., Drenth A., Duncan J., Wagels G., & Brasier C. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology, 30(1): 17-32. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S679] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=48; TAXLABELS Peronospora_sparsa Phytophthora_arecae Phytophthora_botryosa Phytophthora_cactorum Phytophthora_cajani Phytophthora_cambivora Phytophthora_capsici Phytophthora_cinnamomi Phytophthora_citricola Phytophthora_citrophthora Phytophthora_clandestina Phytophthora_colocasiae Phytophthora_cryptogea Phytophthora_drechsleri Phytophthora_erythroseptica Phytophthora_fragariae_var._fragariae Phytophthora_fragariae_var._rubi Phytophthora_gonapodyides Phytophthora_heveae Phytophthora_humicola Phytophthora_idaei Phytophthora_ilicis Phytophthora_infestans Phytophthora_inflata Phytophthora_iranica Phytophthora_katsurae Phytophthora_lateralis Phytophthora_medicaginis Phytophthora_megakarya Phytophthora_megasperma Phytophthora_melonis Phytophthora_mirabilis Phytophthora_multivesiculata Phytophthora_nicotianae Phytophthora_palmivora Phytophthora_phaseoli Phytophthora_porri Phytophthora_primulae Phytophthora_pseudotsugae Phytophthora_quercina Phytophthora_sinensis Phytophthora_sojae Phytophthora_sp._O_group Phytophthora_sp._asparagus_pathogen Phytophthora_syringae Phytophthora_tentaculata Phytophthora_trifolii Phytophthora_vignae ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=26; TAXLABELS Achlya_bisexualis Achlya_intricata Albugo_candida Dictyuchus_sterilis Halophytophthora_batemanensis Peronospora_rubi Phytophthora_cactorum Phytophthora_cambivora Phytophthora_capsici Phytophthora_cryptogea Phytophthora_infestans Phytophthora_insolita Phytophthora_macrochlamydospora Phytophthora_megasperma Phytophthora_palmivora Phytophthora_richardiae Phytophthora_sojae Pythium_aphanidermatum Pythium_dissotocum Pythium_graminicola Pythium_irregulare Pythium_ultimum Pythium_undulatum Pythium_vexans Saprolegnia_ferax Thraustotheca_clavata ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2255] TITLE ITS; LINK TAXA = Taxa2; DIMENSIONS NCHAR=722; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Achlya_bisexualis -ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGGAGGACGCTGCGGACTGCGATACGTAATGCGATTTGAAGAATCAGTGAGTCACCGAAATTTGGAACGCATATTGAACTTGCGGGTTAGCCCTGGGAGTATGTTTGTTCCAGTGTCCGTACCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAATGTGAAGT-GTCTTGTCC------------------AATTGAACA--------------AGTCCTTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AA-GGTGTGTATCATTTGAA-TTTCAA-TATTGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAATT-GCGGTA-GTTTTGCTTGTACTT--GTACGAGTGAACAATATATTG-----CTTTTTGT-TTTACTG--TAGATGTGTGTATTGAA-GTATAAGATAAGAAGTTT---ATAATGGTATGTACTG--GGTTTGTT-TCTGTAGTGTATAGAAGCAAAT-GGGAAATGTGT-CCAATTTGGACCTGATATCAG--------------------------------------------------------------------------------------------------------- Achlya_intricata ------------------------------------------------------------------------------------------------------TTGAAACGCATATTGCACTTTCGGGTTAGTCCTGGGAGTATGTTTGT------------ATCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAATGTGAAGT-GTCTTGTTC------------------TTTTGAACA--------------AGTCCTTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AAAGGTGTGTATCATTTGAA-TTTCAA-TATTGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAATT-GCGGTA-GTTTTGCTTGTACTT--GTACGAGTGAACAATATATTG-----CTTTTTGT-TTTATTG--TAGATGTGTGTATTGCA-GTATGAAATAAGGAGTTT---ATAATGGTATATACTG--GGTT-GTT-TCTTTAGTATATAGAAGCAAAT-GGGAAATATAT-CCAAT------------------------------------------------------------------------------------------------------------------------- Albugo_candida --CAAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCATATCACAAACTTGCCCTTTTT------T---------TGGA------AAGGTGCAGATGCTGAGGT-GTCTTTTTG---GATCAAA-----AGATTTGAAAC----------------GTCCCTTGAAAAGCAGACGATAC--AAGGCTTTCCGTACACATGCTTTGCGTTTGTACATGCTAATCAGTGCGATCTTTCTTTTTGTGACTGGGACGTTGTACTAGTTGCTTTCCACGTTGGGTCACTC-AAATATGCAGTCTTCATTTGCGGTATGTTTTGCTTCGGCTT-GACACATTAGCTCATGAGATTGTATAGTTGGTTGTTCTTGTGGGTAGTACTTAGGATAATGGAAAGGTCATCAAGGAGACGG---AATTGCGTACTGACAAGCTGTACCGAAGTTAAATGCATGGGAAAGACTTT-ATCGTTAATTGGGAAAAGGATGCGTGTTGTTTGCTCTTCGCTCTTGAAGGATGCACTTGCTTGCAGGTACATTCTTTGAGAACGAGTTGTACATGACGCATGTCTCTCAT-------------------------- Dictyuchus_sterilis ------------------------------------------------------------------------------------------------------------------------TTTCGGGTTAGTCCTGGGAGTATGTTTGT------------ATCACACACACTTGTTTCATGTATA-----------TGAA--G---------CAGAATATGAAGT-GTCTTGTA--------------------TAATAACA--------------AGTCCTTTTAAAATGAGA--TACC--TAC-CTACAAACTCGTAAGGA----------A----------GGTATGTATTGTTTGCA-TTTCATATATTGTTT-TGTATGTTACTTC---TT---AACAATGAG--GAATGGAAACAAATT-GCGGTA-GTTTTATCTGTACTTTTGTATGGATGAACAATATATTG-----CTTTTTGT-ATTCATGCCTACAGTTTGGTTGTGGATATACTTGACAAGAAGTGT---AAAATGGTATATACT--------------TGTAGTGTA--GAAGCATATTGGGAAAACCATTCCAAT------------------------------------------------------------------------------------------------------------------------- Halophytophthora_batemanensis TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGGACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGTCTGTATCAGTGTCCGTAAAGCACTGTTGCCTCTCTTCCTTCCGTGTAGTCGGTGGCGGG---GACGG-CAGA-CGTGAAGC-GTCTTGC----TGCAGC-------TGTTTTGTGTGTTGCG-------GCAAGTCCTTTGAAA-----ACTGTGT--TCTC-TCTCTGTTTGTCGAAAGCGAGC---TGGAA-GTGTGCGTTGTGTGCGTGCGTGCG-TGCGCGGCGCTGCTGGGCGAGTG--TTCC-TGCGAGGGCGTTTTGGAGAGGGCTTGTTGATTCGCGGTATGTTAGGTTTCGGCCG-GACAAGGC-GC-----TTATCGGCGGGCTGTTCTCTGTTCTTGCGGTTGA-GTGTTCGTTT---TGGCGGCGTGTGCGTGTGT--GTGCTGTGTGCGGAGCGTTGCGCTTTTG-GCGAT-TTGAATCGCGAGTA---GTGCGTTTGCGGAGGCT-GCGTTGTGTGCGTATGCATGCGTGCGG--TGTT-TGCGAGCG---AGGAGGGTGAGTGAATTTGGGAAGTTGTGTGCTGTTGCGCGATGTTGTTGTCGCGCTTGTGGCACAACTCAA Peronospora_rubi TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCTTTCCGTGTAGTCGGTGGA-GG--ATATGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGA---------TTTTCGGATC-G-----GCT-GCGAGTCCTTTGAAAT--GTACAGAAC--TGTACT-TCTCTTTGCTCGAAAAGCA----TGGC--GTTGCTGAT-TGTGGAGGCTGTC--CGCGTGGCCAGTC--GGCGATCGGTTTGTCTGCTGTGGC--TTAATGGAGGAGTGTTTGATTCGCGGTATGATTGGCTTCGGCTG-AACAG-GC-GC-----TTATTGGA-CGTTCTTT-CTGCTATGGCGGTA---TGGACTGATG---AACCGTAGC-TATGCGTTG--ACTTGGCTTTTGAATTGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------AGTTTCAGCTGT--------CGAGGG--TCGACCCATATTG--GGAAAT-TGTGC-------TGTGCGG----CTTCGGT------CGTGTGGCATCTCAA------------------------------ Phytophthora_cactorum TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--AGATGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TTTTCGGACC-G-----ACT-GCGAGTCCTTTTAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGGC--GTTGCTGGT-TGTGGAGGCTGCT--ATTGTAGCAAGTT--GGCGACCGGTTTGTCTGCTGCGGCG-TTAATGGAAGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-TGTTTTTT-CTGCTGTGGCGTGA---TGGACCGGTG---AACCATAGC-TCAGTTG-----CTTGGCTTTTGAATCGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAAAT--GTG--------TGTGTA-----CTTCGG-------TATG---CATCTCAA------------------------------ Phytophthora_cambivora TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGC-CAGA-CGTGAGGT-GTCTTGCGG----GTGG---------TCTTCGGGCT-G-----CCT-GCGAGTCCCTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGTTGGT-TGTGGAGGCTGCC--TGTGTGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-CGTTCTTC-CTGCTGTGGCGGTA---CGGATCGGTG---AACCGTAGC-TGTGCGAA---GCTTGGCCTTTGAACCGGCGGTGTTGGTCGCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGGG-TCAATCCAT-TTG--GGAACT-TGTGT------CTCTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCA------------------------------- Phytophthora_capsici TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--ATGTGC-CAGA-TGTGAAGT-GTCTTGCGT---GTTGT---------CCTTCGGGTC-G-----ACT-GCGAGTCCTTTTAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGGT--GTTGCTGGT-TGTGGAGGCTGCC--TGCGTGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAAAGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAGGC--GC-----TTATTGAA-TGCTTTTC-CTGCTGTGGCGTGA---TGGGCTGGTG---AACCGTAGC-TGTGTTTG---GCTTGGCTTTTGAATCGGCTTTGCTGTT-GCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCATTTTG--GGAA-C-TTTG--------TGTGCAC-----TTCG---------GTGCG-CATCTCAA------------------------------ Phytophthora_cryptogea TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TCTTCGGTCC-G-----GCT-GCGAGTCCTTTGAAAT--GTACTACAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGCTGGT-TGTGGAGGCTGCC--TGTGTGGCATGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAG-AC-GC-----TTATTGGG-TGCTTTTC-CTGCTGTGGCTGGA---TGGACTGGTG---AACCGTAGC-TGTGCTAG---GCTTGGCGTTTGAACCGGCGGTG-TGGT-GCGAAGTAGGGTGTC---TG---TTCTGGCGTAAGCTGGG-GTGGA-CGAGGG--TCGATCCAT-TTG--GGAAAC-GTTG--------TGTGCG-----CTTCGG-------CGCG---CATCTCAA------------------------------ Phytophthora_infestans TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTCCCTTCCGTGTAGTCGGTGGA-GG--AGATGC-CAGA-TGTGAAGT-GTCTTGCG----GTTGG---------TTTCCGGACC-G-----ACT-GCGAGTCCTTTGAAAT--GTACTAAAC--TGTACT-TCTCTTTGCTCCAAAAGTGG---TGGC--ATTGCTGGT-TGTGGACGCTGCT--ATTGTAGCGAGTT--GGCGACCGGTTTGTCTGCTGCGGCG-TTAATGGAGAAATGCTCGATTCGTGGTATGGTTGCCTTCGGCTG-AACAATGC-GC-----TTATTGGG-TGATTTTC-CTGCTGTGGCGTGA---TGGACTGGTG---AACCATGGC-TCTTTAG-----CTTGGCATTTGAATCGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGC--------CGAGGG--TCGATCCAT-TTG--GGAAAT--GT---------TGTGTA-----CTTCGG-------TATG---CATCTCAA------------------------------ Phytophthora_insolita TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTTCCTTCCTTCCGTGTAGTCGGTGGC-GG--GAACGCTCAGA-CGTGAAGT-GTCTTGCCT---TGGCA---------ATTTGTAGGTTGTT---GTG-GCGAGTCCTTTGAAAT--GTA-AGACG--TGTG-T-TCTCTTTGCTGGAAAAGCGT----GTG--GCGCGTGGT-TGTGGAGGCTGCC--TGTGTGGCCAGTC--GGCGACTGATTTCG-TGCTGATGCGTGC---GGAGAGCGGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-ATTTT-CT-GC-----TTATTGGGTTGCTGTTTGCTGCGTCGGCGTTT-GCGGGGTCGGTG---AACCGTAGC-TGCGTTGG---GCTTGGCTTCTGAACTGTGTGC-TGTGCTGCGAAGTATGGTGGCT-G-C---GTGTGCCTTGTGGTACG-CGCGGCCGAGAGACTGTCACCAT-TTG--GGAA------------GTTTGTGTCG------TCGGCCTCG-GCCGGTGGCATCTCAA------------------------------ Phytophthora_macrochlamydospora TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGGAGGACCCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-CGTGAAGT-GTCTTGCGG---CGGCG---------GCTTCG-GCCGGCT---GCT-GCGAGTCCTTTGAAAT--GTA-AGACC--TGTTCT-TCTCTTTGCCCGAAAAGCGT---TGCGT-GAGTGTGGT-TGTGGAGGCTGCCG-TTTGCGGCATGTC--GGCGACTGATTTCG-TGCTGAGGCGTGT---GGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACTT-CT-GC-----TTATTGGTCTTTTTTTCGCGGCTTTGGCGTTTTGCGGGGTCGGTG---TACCGTAGC-TGCGGGTG---GCTTGGCCTTTGAACCGTGTTCGTGCGGAGCGAAGTAAGGTGG---G-C---GTGACTGTAGTGTTATG-GCCGA--GGGGGAC-GCAACCAT-TTG--GGAAAGTAATGC----TTTTCTGCCGGC--TTTGGGGCTGG-CGGGGCTGCATCTCGA------------------------------ Phytophthora_megasperma TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GG--ATATGC-CAGA-TGTGAAGT-GTCTTGCTA---GCGGT---------CTTTCGAGTCTG-----CCG-GTGAGTCCTTTTAAAT--GTACTGAAC--TGTACTCTCTCTTTGCGCGAAAAGCG----TGGC--GTTGCTGGT-TGTGGAGGCTGCC--CGTGTGGCCAGTC--GGCGACCGGTTTGTTAGCTGTGGCGTTT---GGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTA-AACAATCT-GC-----TTATTGGG-TGCTTTTC-CTGTCATGGCGGTA---TGAACTGGTG---AACCGTAGC-TGTGTGGT---GCTTGGCTTTTGAACCGGCTTTGCT-TT-GCGAAGTAGTGTGAC------------GGCTTCGGCTGT--------CGAGGGG-TCGATCCATTTTG--GGAAAC-TTTG--------TGTGTGCG--GCTTCGTGC-----TGCGCG-CATCTCAA------------------------------ Phytophthora_palmivora TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGGAGGACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTGGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGT-GG--ATGTGC-CAGA-TGTGAAGT-GTCTTGCG----GCTGG---------TCTTCGGATC-G-----GCT-GTGAGTCCTTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCCAAAAGCG----TGGC--GTTGCTGAT-TGTGGAGGCTGCT--TGCGTAGCCAGTCT-GGCGACCAGTTTGTCTGCTGTGGCG-TTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAG-AC-GC-----TTATTGAA-TATTTCTT-CAGCTGTGGTGGTA---TG-ATTGGTG---AACCGTAGC-TATGTGA----GCTTGGCTTTTGAATTGGCTTTGCTGTT-GCGAAGTAGAGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAACT-TGTG--------TATGC-------TTCGG-------CATG---CATCTCAA------------------------------ Phytophthora_richardiae TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGGAGTATGCCTGTATCAGTGTCCGTACATGAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGG--GGACGCGCAGA-CGTGAAGT-GTCTTGCGG---CGGCG---------GCTTCT-GCCGGCT---GCT-GCGAGTCCTTTGAAAT--GTA-AGACC--TGTTCT-TCTCTTTGCCCGAAAAGCGT---TGCGT-GAGTGTGGT-TGTGGAGGCTGCCG-TTTGCGGCATGTC--GGCGACTGATTTCG-TGCTGAGGCGTGT---GGGGAGAGGCTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACTT-CT-GC-----TTATTGGTCTTTTTTTCGCGGCTTTGGCGTTTTGCGGGGTCGGTG---TACCGTAGC-TGCGGGTG---GCTTGGCCTTTGAACCGTGTTCGTGCGGAGCGAAGTAAGGTGG---G-C---GTGACTGTAGTGTTATG-GCCGA--GGGGGAC-GCAACCAT-TTG--GGAAAGTAATGC----TTTTCTGCCGGC--TTTGGGGCTGG-CGGGGCTGCATCTCGA------------------------------ Phytophthora_sojae TAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGG--AGACGC-CAGA-CGTGAGGT-GTCTTGCGG---CGTGG---------CCTTCGGGCT-G-----CCT-GCGAGTCCCTTGAAAT--GTACTGAAC--TGTACT-TCTCTTTGCTCGAAAAGCG----TGAC--GTTGTTGGT-TGTGGAGGCTGCC--TGTATGGCCAGTC--GGCGACCGGTTTGTCTGCTGCGGCGTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTG-AACAATGC-GC-----TTATTGGA-TGCTTTTC-CTGCTGTGGCGGTA---TGGGCTGGTG---AACCGTAGC-TGTGTGAG---GCTTGGCTTTTGAACCGGCGGTGTTGTT-GCGAAGTAGGGTGGC------------GGCTTCGGCTGT--------CGAGGG--TCGATCCAT-TTG--GGAACTCTGTGTT---GTCTCTGCGGCTTGCTGCGGAG--------GTGGCATCTCAA------------------------------ Pythium_aphanidermatum TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGGGAGAGA---GA-TGGCAGAATGTGAGGT-GTCTCGC---TGGCTCC-------CTTTTCGGAGG-AGAAGACG----CGAGTCCCTTTAAATGTACGTTCGCT-CTTTCTTGTGTCTAAG-ATGAAGTGTGATTCTCGAATCGCGGTGATCTGTTTGGATCGCTT-TGCGCATTTGG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACGTTGCAGC-----TGACAGA-GTGTGGTTTTCTGTTCTTTCCTTGAGGTGTACCTGAA-TTGTGTGAGGCAATGGTCTGGGCAAATGGTTGCTGTGT--AGTAGGGTTTTGCTG-CTCTTGGACGCCCTGT--T-------TTCGGATAGG-GTAAAGG---AGGCAACACCAAT-TTG--GGAC-TGTTT--------GCA-ATT--TATTG-TGAACAACTTTCTAA---------------------------------------- Pythium_dissotocum TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCACATTGCACTTTCGGGTTATGCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTTTGTGTAGTCAAGAAGAGA---GA-TGGCAGACTGTGAGGT-GTCTCGC---TGACTCC-------CTCTTCGGAGG-AGAAGACG----CGAGTCCCTTTAAATGTACGTTCGCT-CTTTCTTGTGTTTAAAGATGAAGTGTGACTTTCGAA-CGCAGTGATCTGTTTGGATCGCTT-TGCTCGAGTGG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACTTTGCAGC-----TGACTG--GAGTTGTTTTCTGTTCTTTCCTTGAGGTGTACCTGTC-TTGTGTGAGGCAATGGTCTGGGCAAATGGTTATTGTGT--AGTAGGAAGTTGCTG-CTCTTAAGCGCTCTAG--C-------TTCGGTTAGA-GTAAAGG---AGGCAACACCAAT-TTG--GGAT-AGTC---------GTTGATT--TATCAATGGCGCTCTTTCTAA---------------------------------------- Pythium_graminicola TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTGGAACGCACATTGAACTTCCGGGATATCCCTGGAAGTATGCTTGTTTCAGTGTCCGTACATCAAACTTGCCTTTCTTT-TTTGGTGTAGCCAAGGAGAGA---AA-TGGAAGAATGTGAGGC-GTCTCGC---TGGCTCC-------CCCTCCGGAGG-AGAAAACG----CGAGTCCCTTTAAATGTACGTCCGC--CTTTCTTGTGTCGAAGTA-GAAGTGTGACTATCGAA-CGCAGTGGTCTGTTTGGATCGCTT-GGCGCGAGTTG-----GCGAC----TTCG--GTTAGGACATTA-AAGGAAGCAACCTCTATTGGCGGTATGTTAGGCTTCGGCCC-GACTTTGCAGC-----TGACAGT-GTGTAGTTTTCTGTTCTTTCCTTGAGGTGTACCTGT--TTGTGTGAGGCAATGGTCTAGCCAAATGGTTATTGTGT--AGTAGGTGGTTGCTG-CTCTTTGGCGCCCTC------------TCG---AGG-GTAAAGG---AGGCAACACCAAT-TTG--GGATTAGTCT--------GTGGATT--TATTCATGG-GCGCTTTTCAAT--------------------------------------- Pythium_irregulare TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCGTTTCTTCCTTCCGTGTATTCGGTGGAGGA---GAGTTGCAGA-TGTGAAGT-GTCTCGCTG-TGGTTGGTGTTTGTTGTTTGCAATGAATGCACAGCTTGCGAGTCCTTTTAAATGGACACGACTT--TCTCTTTTTTGTATGTGCGCGGTGCTGTGCGTGAA-CGCGGTGGTTT--TCGGATCGCTC--GCGGCTGTCG-----GCGAC----TTCG--GTGAATGCAT-A-ATGGAGTGGACCTCGATTCGCGGTATGTTGGGCTTCGGCTG-GACAATGTTGC-----TTATTGT-GTGTCTGTT-CCGTGTTCGCCT-GAGGTGTACTGATGGCTGTGGGATTGAACTGGTTACTGTTGTTAGTAGTGTGTGTAGCACGTTGTCGTGGATGCATCTGTGTTTTTGCATACTTGTGTGTGTGCAATTGTACAGAA-GAGG-AGTCTCAAT-TTG--GGAAAAGTTTT-------GTATACTCCGGGTTGATCCTGCGTGTATATCTCAA----------------------------------- Pythium_ultimum TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGGGATGGA---AT-GTGCAGA-TGTGAAGT-GTCTCGCA--TGGTTGCG--TTCGTTTTTTCGATCGAGAATCTGT---CGAGTCCTTTTAAATGGACACGGTCTTTTCTATGGTTTCTATG----AAGTGTAATGGTTGGAAGGCAGTGATTT--TCGGATTGCTG--GCGGCTTTTG-----GCGAC----TTCG--GTATGAACGT---ATGGAGACTAGCTCAATTCGTGGTATGTTAGGCTTCGGCTC-GACAATGTTGCG----TAATTGT-GTGTGGTCT-TTGTTTGTGCCTTGAGGTGTACTAGAGGTTGTCGGTTTGAACCGT------AAGTGATTGTTTAGT--AGAGCATTTTCACGA-TGTATGGAGACGCTGC--A------TTTAG---TTGCGTAGAG---------AGATTGAT-TTG--GGAA-ATTTT--------GTATCATTGTCAAT-TGCAAGATTGTGTATGGTATCTCAA------------------------------ Pythium_undulatum TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTCTACCTGGAAGTATGTCTGTATCAGTGTCCGTACACTAAACTTGCCTTTCTTT-TTCTGTGTAGTCAGAGGAGGA---GA-TGGCCGA-TGTGAAGT-GTCTCGA---TCTGTGC-------TCATTTTGTGCCACACTGAT----CGAGTCCTTTTAAATGTACTCTGTTTTGTCTCTTGTTTCTATG-ATGTACTG-----CTGGAA-CGGAGTGATCT--TTGGATTGCTT--GCATGTTTGGTG---GCAAC----TTCG--GTTTAGACGCTA-G-GAGATAATGCTCGATTCGCGGTATGTTAGGCTTCGGCTG-GACAATGTTGC-----TTATTGT-GCGTTGGCT-CTGTTTTTACCTTGAGGTACCATTAT--TTGTGTGAG--ATGTGTCT----A-AGGATTGCTTGCA--AGTAAGGTGTTGCAG-CGTAGTGACGCTTTGG--TGCTGTTTTTCGGAGCGGTGTTGAGGTTGAGTGAAGCACAAT-TTG--GGAAAATTTT--------GTACACTGCTATTTTTGG-TAATTGTGTATCTCAA----------------------------------- Pythium_vexans TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGGATTGCAGGATTCAGTGAGTCATCGAACTTTTGAACGCATATTGCACTTTCGGGTTACGCCTGGAAGTATGTCTGTATCAGTGTCCGTACACTAAACTTGCGTCTCTTCCGTC-GTGTAGTCGTCGGTTGTTTAGATTG-CAGA-TGTGAGGTTGTCTCGCAACGTGCCCCCCCTTGTTTTTTTGGGGGGTGGATAGGTT-GCGAGTCCCTTTAAAGTCGGACGGTGT--TTTT-TTCCGTTTTGT-----GCTCGA---TGGG----GTGCGGC---TGCGGCCGTGTC-TGCTGGCGGGTCC--GGTGACCT--TTG---GCGATGGCATGA--GAGTGGATTGCTCGATTTGCGGTATGTTAGGCTTCGGCTTTGACAATGCAGC-----TTATTG--GGTGTGTTCGCT--TG--GCTGTTGCTGTATGGGGTG---AGCTGGATGGTCGGTGGGT--GCGTTGT-TGCGTGTCGTTTTCATTGTGTGCGTT-TCGGTTGTCG--TC---GC-CATTTGGGAATTTA-ATGTTTTGGGGG-ACCCCTCAATACAT--CTCA-T---------------------------------------------------------------------------------- Saprolegnia_ferax ------------------------------------------------------------------------------------------------------------------------TTCCGGGTTAGTCCTGGGAGTATGTTTGT------------ATAACACAACCTTGTTTCATTTCTTGATTGAG---ATGGA--G---------CAGAATGTGAAG--GTCTTGTA----------------------ATTACA--------------AGTCCTTTTAAA-CGACG-GTACC--TATGCGTCCTCGTGAGATGTATT---A---TTTA-----AA-GGTATGCCTGCGCTTC--TTTCGA---GAGTCT-TGTGTGGCGGCAC---AC---AGCATTTCA--AAGAGAGAGCAAATTCGCGGTA-GTTTTGCTTGTATTTCGGTACGAGTGGACAC-ATATTG-----CTTTTTGTGATTTCTG---CGA-GTCTGTTGTTTAAGCACAGGACACGTAAGG----AGAGTGAG-TATGCTG--G----------TGCATTTCTTGGCGCAAAATTGGGAATTCAAT---AAT------------------------------------------------------------------------------------------------------------------------- Thraustotheca_clavata -------------------------------------------------------------------------------------------------------------------------TTTGGGTTAGTCCTGGGAGTATGTTTGT------------ATCAAAC-CAATTGTTTCATGTATT-----------TGAA--G---------CAGAACGTGAAGT-GTCTTGCTC------------------TTTAGAACA--------------AGTC-TTTTAAA-TGAAACGTACC--TAT-ATACAACGTAAGAAGCATACCAA---TATA-----AA-GGTGTGTATCATTTGAA-TTTCAAATAATGTTT-TGTATGAATATAC---AT---GACGTTGA----AAGTAAAATGAAT--GCGGTA-GTTTTGCT-GTACTT--GTACAAGTGAACAATATATTG-----CTTTTTGT-TTTGCTG--TAGATGTGTGTATTGCA-ATATAAGATAAGGAGTTT---ATAATGGTATATACTG--GGTT-GTT-TCTGTAGTATATAGAAGCAAAT-GGGAAATATAT-CCAAT------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS) = N: 1-722; CODONPOSSET CodonPositions (CHARACTERS = ITS) = N: 1-722; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2257] TITLE 'ITS+'; LINK TAXA = Taxa1; DIMENSIONS NCHAR=889; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Peronospora_sparsa CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCAACA-TAATT-GGGGGTTTATTT-GGC-G-GCGGCTGCTGGC-A-TTTTGTGCTGGCTGGCTGC-TACTGGGCAAGCCCTATC---------GCGAGCG-TTTGGG----CCTTG-----GCCTGAGCTAGTAGC----TTTTA--T-TTTAAACCATTCTT-AATTACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCTTTCCGTGTAGTCGGTGGA-GGATATGC-CAGATGTGAAGTGTCTTGCGGCTGAT----TTTCGGATCGG--CTGCGAGTCCTTTGAAATGTACAG-AACTGTACT-TCTCTTTGCTCGAAAAGCA-TGGCGTTGCTGATTGTGGAGGCTGTCCGCGTGGCCAGTC-GGCGATCGGTTT-GTCTGCTGTGGC-TT--AATGGAGGAGTGTTTGATTCGCGGTATGATTGGCTTCGGCTGAACAG-GCGCTTATTGGACGTTCTTTC-TGCTAT-GGCGGTATGGACTGATGAACCGTAGCTATGCGTTG-ACTTGGCTTTTGAATTGGCT-TTGCTGTT-GCGAAGTAGAGTGGCA---GTTTCAGC-----------TG----TCGAGGG-TCGACCCATATTGGGAAA--TTG-TGCTGTGCGGC----TTCGGTCGTG------TGGCATCTCAA Phytophthora_arecae CCACACCTAAAAA--CTTTCCACGTGAACCGTATCAAAA--CT-TAGTT-GGGGGTCTCTTTCGGC-G-GCGGCTGCTGGC-T-TCAT-TGCTGGC-GGCTGC-TGTTGGGAGAGCTCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GTCTGAACTAGTAGC----TTTT-----TTAAACCCATTCTT-TATAACTGATTATACTGTAGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGT-GGATGTGC-CAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGATCGG--CTGTGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCCAAAAGCG-TGGCGTTGCTGATTGTGGAGGCTGCTTGCGTAGCCAGTCTGGCGACCAGTTT-GTCTGCTGTGGCGTT--AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGAATATTTCTTC-AGCTGT-GGTGGTATGAT-TGGTGAACCGTAGCTATGTG--A-GCTTGGCTTTTGAATTGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAC--TTG-TG-TATGC-------TTCGGCAT----------GCATCTCAA Phytophthora_botryosa CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTGTTGCTTGGC-GTT---------------------TT-GCTGA----------GCCGCGCCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCTGGGCTAGTAGC----TTTTTTGTTTTAAACCCATTTAA-CAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGCGGTTTTTGTGCCTTCGGGCCGTGGCCGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-GCGCTTATTGTATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTGT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGTG-TCGATCCATTTTGGGAAAT-TTT-GTGTGCGCTTT-----CGAGTGT----------GCATCTCAA Phytophthora_cactorum CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAAACCAAA-TAGTT-GGGGGTCTTGTCTGGT-G-GCGGCTGCTGGC-T-TTAT-TGTTGGC-GGCTGC-TGCTGGGTGAGCCCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GCCTGAGCTAGTAGC----TTTTC--TTTTAAACCCATTCCT-TAATACTGATTATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGCTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCTATTGTAGCAAGTT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAAGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAATGCGCTTATTGGATGTTTTTTC-TGCTGT-GGCGTGATGGACCGGTGAACCATAGCTCAGTTG----CTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TGT-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_cajani CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAAC--AAG-TAGTT-GGGGGCCTGCTCTGTGTGGCTAGCTGTCGATGTCAAAGTCGGCGACTGGCTGC-TATGTGGCGGGCTCTATCA------TGGCAATTGGTTTGGGTCCTCCTCGTGGGGAACTAGATCATGAGCCC------ACTTTTTAAACCCATTCTT-GATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAGGTGTCTTGCGGCGCGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTCGTTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCAGTTT-GTATGGTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTCC-TGCTGT-GGCGGTATGGGCTGGTGAACCGTAGTTGTGCAA--GGCTTGGCTTTTGAACCGGTG-GTGTTG-TTGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTCTGTGTTGTCT-CTGCG-GCTT-GCTGTG---GAGGTAGCATCTCAA Phytophthora_cambivora CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCACT-TAGTT-GGGGGCTAGTCCCG-GCGGCTGGCTGTCGATGTCAAAGTTGACGGCTG-CTGC-TGTGTGTCGGGCCCTATCA------TGGCGAGCG-TTTGGGTCCCTCTCG-GGGGAACTGAGCCAGTAGCCC----TTATTTTTTAAACCCATTCTT-GAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGGGACGC-CAGACGTGAGGTGTCTTGCGG-GTGG---TCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGACGTTCTTCC-TGCTGT-GGCGGTACGGATCGGTGAACCGTAGCTGTGCGA--AGCTTGGCCTTTGAACCGGCG-GTGTTGGTCGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGGGTCAATCCAT-TTGGGAACT-TGTGTCT-CTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCAA Phytophthora_capsici CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTCTTGTA-----------------------------------------------------CCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCCGGGCGAGTAGC----TTTTT-GTTTTAAACCCATTTCA-CAATTCTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGCGTGTTGT---CCTTCGGGTCGA--CTGCGAGTCCTTTTAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AAAGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-GCGCTTATTGAATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTTT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCATTTTGGGAAC--TTT-GTGTGCACTT------CG-GTGC----------GCATCTCAA Phytophthora_cinnamomi CCACACCTAAAAAA-CTTTCCACGTGAACCGTTTCAACCCAAT-TAGTT-GGGGGCCTGCTCTG-GGCGGCGGTTGTCGATGTCAAAGTCGACGGTTG-CTGT-TGCGTGGGGGGCCCTATCAC-----TGGCGAGCG-TTTGGGTCCCCCTCG-GGGGAACTGAGCTAGTAGCC------TCTCTTTTAAACCCATCCTG-TAATACTGAACATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTGGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGGTGC-CAGACGTGAGGTGTCTTGCGG-GCGG---TCTTCGGACTGG--CTGTGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTCCGATTCGCGGTATGGTTGGCTCCGGCTGAACAAAGCGCTTATTGGATGTTCCTCCCTGCTGT-GGCGGTACGGATCGGTGAACCGTAGCTGTGCTA--GGCTTGGCGTTTGAACCGGCG-GTGTTG-TTGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTCTGTGTCT-CTCCGGCGCACTT--GTGTGCTTGTGGTGGCATCTCAA Phytophthora_citricola CCACACCTAAAAAA-CTTTTCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTCTTGCTT-----TT---------------------TT-GC----------------GAGCCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCTGGGCTAGTAGC----TTTTT-GTTTTAAACCCATTCTA-CAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGCGGGT-GT---CCTTCGGGTCGT--CTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCAGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-GCGCTTATTGTATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTATGTGT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCATTT-GGGAAC--TTT-GTGTGCACCT------CG-GTGC----------GCATCTCAA Phytophthora_citrophthora CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTGTTGCTTGGC-GTT---------------------TTTGCTGA----------GCCACGCCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCTGGGCTAGTAGC----TTTTTTGTTTTAAACCCATTTAA-CAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGCGGTTTTTGTGCCTTCGGGCCGTGGCTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-GCGCTTATTGTATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTGT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGTG-TCGATCCATTTTGGGAACG-TTT-GTGTGCGCTTT-----CGAGTGT----------GCATCTCAA Phytophthora_clandestina CCACACCTAAAA-A--TTTCCACGTGAACCGTTTCAACCCAAA-AAATT-GGGGGTCTTGTTTGGT-G-GTGGCTGCTGGC-T-TTAT-TGCTGGC-GGCTGC-TGCTGGATGAGCCCTAAC---------GCGAAAG-TTTAGA----CTTCG-----GTCCGGGCTAGTAGC----T-TTA--TTTTAAACCCATTCCT-TAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGACTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGT-CAGATATGAAGTGTCTTGCGGTTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGAGGCTGTTACTGTGGCCAATT-GGCGACCGGTTT-GTCTGCTGTGGCGTT--AATGGAAGAATGCTTGATTCGCGGTATGATTAGCTTCGGCTGAACAATGCGCTTATTGGGTGTTTATCC-TGCTGT-GGCGTGATGGACTGGTGAACCATAGCTCGGTGA----CTTGGCTTTTGAATCGGCTATTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTA-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_colocasiae CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTGTTGCTTGGC-ATT---------------------TT-GCTGA----------G--GCGCCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCTGGGCTAGTAGC----TTTTT-GTTTTAAACCC-TTTAA-CAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGATGTGAAGTGTCTTGCGGTTTGTGTGCCTTCGGGCCGAGGCTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGATGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGTATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTGT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGTG-TCGATCCATTTTGGGAACT-TTT-GTGTGCGCTTT-----CGAGTGT----------GCATCTCAA Phytophthora_cryptogea CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCTTTTTAATTTGGGGGCTTCCGTCTGGC----------CGGCCGG-----TTTTCGGCTGG----CTGGGTGGCG-GCTCTATCAT------GGCGACCGCT-TGGG----CCTCG---G-CCTGG-GCTAGTAGCGTA-T------TTTTAAACCCATTCCTAATT-ACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGTCCGG--CTGCGAGTCCTTTGAAATGTACTA-CACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGA-CGCTTATTGGGTGCTTTTCC-TGCTGT-GGCTGGATGGACTGGTGAACCGTAGCTGTGCTA--GGCTTGGCGTTTGAACCGGCG-GTGTGGT--GCGAAGTAGGGTGTC---TGTTCTGGCGTAAGCTGGGGTG---GACGAGGG-TCGATCCAT-TTGGGAAACGTTGTG----TGCG-----CTTCGG---CGC-------GCATCTCAA Phytophthora_drechsleri CCACACCTAAAAAA-CTT-CCACGTGAACCGTATCAACCTTTTTAAATTGGGGGCTTCCGTCTGGC----------CGGCCGG-----TTCTCGGCTGG----CTGGGTGGCG-GCTCTATCAT------GGCGACCGCC-TGGG----CCTCG---G-CCTGG-GTTAGTAGCGTA-T------TTTTTAAACCATTCCTAATT-ACTGAAAAAACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGTCCGG--CTGCGAGTCCTTTTAAATGTACTA-CACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTTTAATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGA-CGCTTATTGGGTGCTTTTTC-TGCTGC-GGCGGGATGGACTGGTGAACCGTAGCTGTGCTA--GGCTTGGCGTTTGAACCGGCG-GTATTGT--GCGAAGTAGGGTGTC---TGTCTCGGCGCAAGCTGGGGTG---GGCGAGGG-TCGATCCAT-TTGGGAAACGTTGTG----TGCG-----CTTCGG---CGT-------GCATCTCAA Phytophthora_erythroseptica CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCTTTTTAAATTGGGGGCTTCCGTCTGGC----------CGGCCGG-----TTTTCGGCTGG----CTGGGTGGCG-GCTCTATCAT------GGCGACCGCT-TGGG----CCTCG---G-CCTGG-GCTAGTAGCGTA-T------TTTTAAACC-ATTCCTAATT-ACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACACTAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGTCCGG--CTGCGAGTCCTTTGAAATGTACTA-CACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGA-CGCTTATTGGGTGCTTTTCC-TGCTGT-GGCTGGATGGACTGGTGAACCGTAGCTGTGCTA--GGCTTGGCGTTTGAACCGGCG-GTGTGGT--GCGAAGTAGGGTGTC---TGTTCCGGCGTAAGCTGGGGTG---GACGAGGG-TCGATCCAT-TTGGGAAACGTTGTG----TGCG-----CTTCGG---CGC-------GCATCTCAA Phytophthora_fragariae_var._fragariae CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCACT-TAGTT-GGGGGCCTGTCCTG-GCGGCTGGCTGTCGATGTCAAAGTTGACGGCTG-CTGC-TGTGTGTCGGGCCCTATCA------TGGCGAGCG-TTTGGGTCCCTCTCG-GGGGAACTGAGCCAGTAGCCC----TTTTCTTTTAAACCCATTCTT-GAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGGGACGC-CAGACGTGAGGTGTCTTGCGG-GTGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGACGTTCTTCC-TGCTGT-GGCGGTACGGATCGGTGAACCGTAGCTGTGCGA--GGCTTGGCCTTTGAACCGGCG-GTGTTGGTCGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCAT-TTGGGAACT-TGTGTCT-CTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCAA Phytophthora_fragariae_var._rubi CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCACT-TAGTT-GGGGGCCTGTCCTG-GCGGCTGGCTGTCGATGTCAAAGTTGACGGCTG-CTGC-TGTGTGTCGGGCCCTATCA------TGGCGAGCG-TTTGGGTCCCTCTCG-GGGGAACTGAGCCAGTAGCCC----TTTTCTTTTAAACCCATTCTT-GAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGGGACGC-CAGACGTGAGGTGTCTTGCGG-GTGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGACGTTCTTCC-TGCTGT-GGCGGTACGGATCGGTGAACCGTAGCTGTGCGA--GGCTTGGCCTTTGAACCGGCG-GTGTTGGTCGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCAT-TTGGGAACT-TGTGTCTTCTGCGGCGCGCTTCGGTGTGCTGCGGGTGGCATCTCAA Phytophthora_gonapodyides CCACACCTAAAAAA-CTT-CCACGTGAACCGTATCAACCCCTT-AAATT-TGGGGGCTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGC-TGCTGGGCAGGCTCTATCATG-----GGCGAGCG-TTTGGG----CTTCG-----GCTCGAACTAGTAGC----TAT-CAATTTTAAACCCTTTCTTTAAATACTGAACATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGCTGGCGGT---CTTTCGAGTCTGC-CGGTGAGTCCTTTGAAATGTACTG-AACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGCCTGCCCGTGTGGCCAGTC-GGCGACCGGTTT-GTTAGCTGTGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATCTGCTTATTGGGTGCTTTTCC-TGTCATTGGCGGTACGAACTGGTGAACCGTAGCTGTGTGG--TGCTTGGCTTTTGAACCGGCT-TTGCT--TTGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCATTTTGGGAAAC-TTT-GTGTGTGCGGC----TTCGTGCTGC------GCGCATCTCAA Phytophthora_heveae CCACACCTAAAAAA--TTTCCACGTGAACCGTAACAAACC-AA-TAGTT--GGGGGCGAGTTTGGC-G-GCTACTGCTG---------------------------CTGGACGAGCTCTATCAT------GGCGAGCG-TTTGGA----CTTCG-----GTCTGAACTAGTAGC----CCTTC--TTTTAAACCCATTCCT-AATTACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGCTGGT----TCTCGAACTGG--CTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCA-TGGCGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTCT-GTCTGCTGCAGCGTT--AATGGAGGCGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGTATGTGTTTCC-TGTTGT-GGCGGTAATGGCTGGTGTACCGTAGCTATGTGG--TGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GTGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTT-GTGTGTGCCTTT---ATTGGCGT----------GCATCTCAA Phytophthora_humicola CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCCTT-AAGAT-TGGGAACTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGC-TGCTGCGCGGGCTCTATCATG-----GGCGAGCG-TTTGGG----CTTCG-----GCTCGAGCTAGTAGC----TTT-TTCTTTTAAACCCCTTCTTTAATTACTGAA-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGCTAGCGGT---CTTTCGAGTCTGC-CGGCGAGTCCTTTGAAATGTACTG-AACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCCCGTATGGCCAGTC-GGCGACCGGTTT-GTTAGCTGTAGTATAT-ACTGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATCTGCTTATTGGGTACTTTTCC-TGCTATTGGCGGTACGAACTGGTGAACCGTAGCTGTGTGG--AGCTTGGCTTTTGAATCGGCT-TTGCT--T-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----CCGAGGGGTCGATCCATTTTGGGAAAT-TAT-GTGTGTGCGGC----TTCGTGCTGC------GCGCATCTCAA Phytophthora_idaei CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAAACCAAA-TAGTT-GGGGGTCTTGTCTGGT-G-GCGGCTGCTGGC-T-TTAT-TGTTGGT-GGCTGC-TGCTGGGTGAGCCCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GCCTGAGCTAGTAGC----TTTTC--TTTTAAACCCATTCCT-TAATACTGATTATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGCTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCTATTGTAGCAAGTT-GGTGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAAGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGTTTTTTC-TGCTGT-GGCGTGATGGACCGGTGAACCATAGCTCAGTGG----CTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGGAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TGT-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_ilicis CCACACCTAAAAA--C-TTCCACGTGAACTGTATCGAACA-AC-TAGTT-GGGGGTCTTGTTTGGC-GTGCGGCTGCTTCG-G-TA------------GCTGC-TGCTAGGCGAGCCCTATCAC------GGCGAGCG-TTTGGA----CTTCG-----GTCTGAGCTAGTAGC----TATT---TTTTAAACCCATTCTT-TAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGACGC-CAGACGTGAAGTGTCTTGCGGCGAAT----TTTCGAATTTG--CTGTGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGCCTGCCCGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGTGGCGTT--AATGGAGGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAA-GCGCTTATTGGATGTTCTTCT-TGCTGT-GGCGTGATGGACTGGTGAACCGTAGCTATGTGT--GGCTTGGCTTTTGAATCGGCTTT-GCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTT-GTGTGTATGAC----TTCGGTTGT-------AAGCATCTCAA Phytophthora_infestans CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAACCC-AA-TAGTT-GGGGGTCTTACTTGGC-G-GCGGCTGCTGGC-T-TTAT-TGCTGGC-GGCTAC-TGCTGGGCGAGCCCTATCAAAA----GGCGAGCG-TTTGGA----CTTCG-----GTCTGAGCTAGTAGC--TTTTTTA--TTTTAAACCCTTTACT-TAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTCCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGTTGGT----TTCCGGACCGA--CTGCGAGTCCTTTGAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGACGCTGCTATTGTAGCGAGTT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAGAAATGCTCGATTCGTGGTATGGTTGCCTTCGGCTGAACAATGCGCTTATTGGGTGATTTTCC-TGCTGT-GGCGTGATGGACTGGTGAACCATGGCTCTTTAG----CTTGGCATTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----CCGAGGG-TCGATCCAT-TTGGGAAA--TGT--TGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_inflata CCACACCTAAAAA--CTTTTCACGTGAACCGTATCAACCCTTT-TAGTT-GGGGGTCTTGCTT-----TT---------------------TTTGC----------------GAGCCCTATCAT------GGCGAATG-TTTGGA----CTTCG-----GTCTGGGCTAGTAGC----TTTTT-GTTTTAAACCCATTCTA-CAATACTGATTATACTGCGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATGTGC-CAGACGTGAAGTGTCTTGCGGGT-GT---CCTTCGGGTCGT--CTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGTGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-GCGCTTATTGTATGCTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTGT--GGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCATTT-GGGAAC--TTT-GTGTGCACCT------CG-GTGC----------GCATCTCAA Phytophthora_iranica CCACACCTAAAATA--TTTCCACGTGAACCGTTTCAACCAAAA-AAATTTGGGGGTCTTGTTTGGC-G-GCGGCTACTGGC-T-TTAT-TGCTGGC-GGCTGC-TGCTGGACGAGCCCTAAC---------GCGAAAG-TTTAGA----CTTCG-----GTCTGGGCTAGTAGC----T-TTA--TTTTAAACCCATTCCT-TAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGACTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGT-CAGATATGAAGTGTCTTGCGGTTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGAGGCTGTTACTGTGGCCAATT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAAGAATGCTTGATTCGCGGTATGATTGGCTTCGGCTGAACAATGCGCTTATTGGGTGTTTATCC-TGCTGC-GGCGTGATGGACTGGTGAACCATAGCTCGGTGA----CTTGGCTTTTGAATTGGCTATTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTA-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_katsurae CCACACCTAAAAAA-CTTTCCACGTGAACCGTAACAAACC-AA-TAGTT--GGGGGCGAGTTTGGC-G-GCGGCTGCTGGC-T-T--T-GGCTGGCTGGCTGC-TGCTGGACGAGCTCTATCAT------GGCGAGCG-TTTGGA----CTTCG-----GTCTGAACTAGTAGC----CCTTC--TTTTAAACCCATTTCT-AATTACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGCTGGT----TCTCGAACTGG--CTGCGAGTCCTTTGAAATGTACTG-AACTGTACT-CCTCTTTGCTCAAAAAGCA-TGGCGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTCT-GTCTGCTGCGGCGTT--AATGGAGGCGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGTGTTTCC-TGCTGT-GGCGGTAATGGCTGGTGTACCGTAGCTATGTGG--CGCTTGGCTTTTGAATCGGCT-TTGCTGTT-GTGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTT-GTGTGTGCCTTT---ATTGGCGT----------GCATCTCAA Phytophthora_lateralis CCACACCTAAAAAA-CTT-CCACGTGAACCGTATCAAAACCCT-TAGTTGGGGGCTTCTGT-TCGG----------CTGGC---------TTCGGCTGG----CTGGGCGGCG-GCTCTATCAT------GGCGAGCGCATGGGC----CTTCG---G-GTCTGAGCTAGTAGCCCTCT------TTTTAAACCCATTCCTAAAT-ACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGCCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGTGCAGACGTGAAGTGTCTTGCGATTGGT----CTTCGGGCCGG--CTGCGAGTCCTTTGAAATGTAC-AGAACTGTACT-TCTCTTTGCTCGAAAAGCA-TGACGTTGTTGGTTGTGGAGGCTGTCCGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTAGCTTCGGCTGAACAATGCGCTTATTGGATGTTTTTTC-TGCTGT-GGCGGTAATGACTGGTGAACCGTAGCTATGCAG--GGCTTGGCTTTTGAACCGACG-GTGTTGT--GCGAAGTAGAGTGGC----GGTTTGGCGCAAGCTGGGCTG----TCGAGGG-TCGATCCAT-TTGGGAAA-TTTGTG--TTGGCAG----CTTCGGCT--GTT-----GGCATCTCAA Phytophthora_medicaginis CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCTTTT-AAATTGGGGGCTTCCGTCTGGC----------CGGCCGG-----CTTTCGGCTGA----CTGGGTGGCG-GCTCTATCAT------GGCGACCGCT-TGGG----CCTCG---G-CTTGG-GCTAGTAGCTTC-T------TTT-AAACCCATTCCTAATT-ACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGTCCGG--CTGCGAGTCCTTTGAAATGTACTA-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGA-CGCTTATTGGGTGCTTTTCC-TGCTGT-GGTGGGACGGACTGGTGAACCGTAGCTGTACTA--GGCTTGGCGTTTGAACTGGCG-GTGTGGT--GCGAAGTAGGGTGTC---TGTTCCGGCGCAAGCTGGGGTG---GGCGAGGG-TCGATCCAT-TTGGGAAA-GTTGTG----TGCG-----CTTCGG---CGC-------GCATCTCAA Phytophthora_megakarya CCACACCTAAAAA--CTTTCCACGTGAACCGTATCAACC--TT-TAGTT-GGGGGTCTTTTTCGGC-G-GCGGCTGCTGGT-T-TAAT-TACTGGC-GGTTGC-TGCTGGGAGAGCCCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GTCTGAACTAGTAGC----TTTT-----TTAAACCCATTCAT-TATTACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACCTCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGATGTGAGGTGTCTTGCGGCTGGC----CTTCGGGTCGG--CTGTGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGTA-AAGC-TTGCTTGTTGTGGAGGCTGCTTGTGTAACCAGTC-GGCGACTAGTTT-GTCTGCTGTGGCGTT--AATGGAGGAGTGTTCGATTCGCGGTATGATTGGCTTCGGCTGAACAG-AAGCTTATTGGGCGTTTTTCC-TGCTAT-GGCGGTATGAAGTAGTGAACCGTAGTTATGTG--G-GCTTGGCTTTTGAATGTGCT-C-GCTGT--GCGAAGTAGAGTGGCG---ACTTTGGT-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTG-TG-TGTAC-------TTCGGTAT----------GCATCTCAA Phytophthora_megasperma CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCCTT-AAATT-TGGGGGCTTGCTCGGCGGCGTGTGTGCTGGCCTGTAATGGGTCGGCGTGCTGC-TGCTGGGCGGGCTCTATCATG-----GGCGAGCG-TTTGGG----CTTCG-----GCTCGAGCTAGTAGC----TAT-CAATTTTAAACCCTTTCTT-AAATACTGAACATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGATGTGAAGTGTCTTGCTAGCGGT---CTTTCGAGTCTGC-CGGTGAGTCCTTTTAAATGTACTG-AACTGTACTCTCTCTTTGCGCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCCCGTGTGGCCAGTC-GGCGACCGGTTT-GTTAGCTGTGGCGTTT----GGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTAAACAATCTGCTTATTGGGTGCTTTTCC-TGTCAT-GGCGGTATGAACTGGTGAACCGTAGCTGTGTGG--TGCTTGGCTTTTGAACCGGCT-TTGCT--TTGCGAAGTAGTGTGACG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCATTTTGGGAAAC-TTT-GTGTGTGCGGC----TTCGTGCTGC------GCGCATCTCAA Phytophthora_melonis CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAAC--AAG-TAGTT-GGGGGCCTGCTCTGTGTGGCTAGCTGTCGATGTCAAAGTCGGCGACTGGCTGC-TATGTGGCGGGCTCTATCA------TGGCGATTGGTTTGGGTCCTCCTCGTGGGGAACTGGATCATGAGCCC------ACCTTTTAAACCCATTCTT-GATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAGGTGTCTTGCGGCGCGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCAGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTCC-TGCTGT-GGTGGTATGGGCTGGTGAACCGTAGTTGTGCGA--GGCTTGGCTTTTGAACCGGCG-GTGTTG-TAGCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTCTGTGTTGTCT-CTGCG-GCTT-GCTGTG---GAGGTAGCATCTCAA Phytophthora_mirabilis CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAACCC-AA-TAGTT-GGGGGTCTTACTTGGC-G-GCGGCTGCTGGC-T-TTAT-TGCTGGC-GGCTAC-T-CTGGGCGAGCCCTATCAAAA----GGCGAGCG-TTTGGA----CTTCG-----GTCTGAGCTAGTAGC--TTTTTTA--TTTTAAACCCTTTACT-TAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGTTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGACGCTGCTATTGTAGCGAGTT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAGAAATGCTCGATTCGTGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGGTGATTTTCC-TGCTGT-GGCGTGATGGACTGGTGAACCATGGCTCTTTAG----CTTGGCATTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----CCGAGGG-TCGATCCAT-TTGGGAAA--TGT--TGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_multivesiculata CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCCTT-TAGTT-GGGGGTCTTGCTTGGC-GTGCGGCTGCTGGCCT-TTATTGGTTGGCTGGCTGCGTGCTGGGCGAGCCCTATCAT------GGCGATCG-TTTGGA----CCTCG-----GTCTGAGCTAGTAGC----TTTT--GTTTTAAACCCATTCTT-TAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGACGT-CAGATGTGAAGTGTCTTGCGGTT---G-GCCTTCGGGTCGT--CTGCGAGTCCTTTGAAATGTACTG-AACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGTATTGTTGGTTGTGGAGACTGCCTGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTACGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGGACGTTTTTCC-TGCTGT-GGCGTGATGGGCTGGTGAACCGTAGCTGTGTTT--GGCTTGGTCTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGCGGCG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCATTTTGGGAAG--TTT-GTGTGTACTT------CG-GTGC----------GCATCTCAA Phytophthora_nicotianae CCACACCTAAAAAAACTTTCCACGTGAACCGTTTCAACCC-AA-TAGTT-GGGGGTCTTATTTGGC-G-GCGGCTGCTGGC-T-TAAT-TGTTGGC-GGCTGC-TGCTGAGTGAGCCCTATCAAAAAAAAGGCGAACG-TTTGGG----CTTCG-----GCCTGATTTAGTAGTCTTTTTTTC--TTTTAAACCCATTCCT-TAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATTAAACTTGACTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGT-CAGATGTGAAGTGTCTTGCGATTGGT----CTTCGGACCGG--CTGCGAGTCCTTTTAAATGTACTA-AACTGAACT-TCTCTTTGCTCGAAAAGTGGTGGCGTTGCTGGTTGTGAAGGCTGCTATTGTGGCAAATT-GGCGACTGGTTT-GTCTGCTGCGGCATT--AATGGAAGAGTGTTCGATTCGTGGTATGGTTGGCTTCGGCTGAACAATGCACTTATTGGACGTTTTTCC-TGCTGT-GGCGTGATGGACTGGTGAACCATAGCTCGGTGG----CTTGGCTTTTGAATTGGCT-TTGCTGTT-GCGAAGTAGGGTGGCA---GCTTCGGT-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAC--TTA-ATGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_palmivora CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAAAA--CT-TATTT-GGGGGTCTCTTTCGGC-G-GCGGCTGCTGGC-T-TCAT-TGCTGGC-GGCTGC-TGTTGGGAGAGCTCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GTCTGAACTAGTAGC----TTTT-----TTAAACCCATTCTT-TATAACTGATTATACTGTAGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGT-GGATGTGC-CAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGATCGG--CTGTGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCCAAAAGCG-TGGCGTTGCTGATTGTGGAGGCTGCTTGCGTAGCCAGTCTGGCGACCAGTTT-GTCTGCTGTGGCGTT--AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAG-ACGCTTATTGAATATTTCTTC-AGCTGT-GGTGGTATGAT-TGGTGAACCGTAGCTATGTG--A-GCTTGGCTTTTGAATTGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAC--TTG-TG-TATGC-------TTCGGCAT----------GCATCTCAA Phytophthora_phaseoli CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAACCC-AA-TAGTT-GGGGGTCTTACTTGGC-G-GCGGCTGCTGGC-T-TTAT-TGCTGGC-GGCTAC-TGCTGGGCGAGCCCTATCAAAA----GGCGAGCG-TTTGGG----CTTCG-----GTCTGAGCTAGTAGC--TTTTTTA--TTTTAAACCCTTTACT-TAATACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAACAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGTTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGACGCTGCTATTGTAGCGAGTT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAGAAATGCTCGATTCGTGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGGTGATTTTCC-TGCTGT-GGCGTGATGGACTGGTGAACCATGGCTCTTTAG----CTTGGCATTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----CCGAGGG-TCGATCCAT-TTGGGAAA--TGT--TGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_porri CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCTTGATTATTGGGGGCTGCTGACTGGA----------CTGGC---------TTCGGCTAGA---CTGGGCGGCG-GCTCTAGC---------GCGACCGTTCTGGG----CTTCG---G-CTTGGGGCTAGTAGCTTA--------TTTTAAACCCATTCTTAATTTACTGAA-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGCGCAGATGTGAAGTGTCTTGCGACTGGG----CTTCGGTCTGG--ATGCGAGTCCTTTTAAATGTACTAAAACTGTA-T-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGTGTTA-C-TGGAGAAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTAGATGTTTTTCT-TACTGC-GGCGG-ATGGACTGGTGAACCGTAGCTGTGTA---GGCTTGGCTTTTGAACCGGCG-ATATTGT--GCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGCTGGGGTGGCTGTCGAGGG-TCGATCCAT-TTGGGAAATGTTGTGCCGTTGCGA----CCTCGGTTGCTTT-----GGCATCTCAA Phytophthora_primulae CCACACCTAAAAA--CTTCCCCCGTGAACCGTATCAACCCTTTTTTATTGGGGGCTGCTGACTGGA----------CTGGC---------TTCGGCTGGA---CTGGGTGGCG-GCTCTAGC---------GCGACCGTTCTGGG----CTTCG---G-CTTGGGGCTAGTAGCTTTCT------TTTTAAACCCATTCTTAATTTACTGAA-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGC-CAGATGTGAAGTGTCTTGCGACTGGA----CTTTGATCTAG--ATGCGAGTCCTTTTAAATGTACTAAAACTGTA-T-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGTGTTT-A-TGGAGAAGTGTTTAATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTAAATGTTTTTCT-TACTGT-GGCGG-ATAGACTGGTGAACCGTAGCTGTGTA---GGCTTGGCCTTTGAACCGGTG-ATATTGT--GCGAAGTAGAGTGACGGCTGTTCCGGCGCAAGCTGGGGTGGCTGTCGAGGG-TCGATCCAT-TTGGGAAATGTTGTGCCGTTGCGA----CCTCGGTTGCTTT-----GGCATCTCAA Phytophthora_pseudotsugae CCACACCTAAAAA--CTTTCCACGTGAACCGTTTCAAACCAAA-TAGTT-GGGGGTCTTGTCTGGT-G-GCGGCTGCTGGC-T-TTGT-TGTTGGC-GGCTGC-TGCTGGGTGAGCCCTATCAT------GGCGAGCG-TTTGGG----CTTCG-----GCCTGAGCTAGTAGC----TTTTC--TTTTAAACCCATTCCT-TAATACTGATTATACTGTGGGGACGAAAGTCCTTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGATGC-CAGATGTGAAGTGTCTTGCGGCTGGT----TTTCGGACCGA--CTGCGAGTCCTTTTAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCTATTGTAGCAAGTT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAAGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGATTTTTC-TGCTGT-GGCGTGATGGACCGGTGAACCATAGCTCAGTGG----CTTGGCTTTTGAATCGGCT-TTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATTCAT-TTGGGAAA--TGT-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_quercina CCACACCTAAAAAAACTTTCCACGTGAACCGTTTCAACCA-AA-TATTTTGGGGGTCTTGTCTGGC-GTATGGCTGCTGCT-G-TAAAAGGC-GGC-GGCTGT-TGCTGGGTGAGCCCTATCAT------GGCGAACG-TTTGGG----CTTCG-----GTCTGAACAAGTAGC----TCTT---TTTTAAACC-ATTACT-TATTACTGATTATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGA-GGAGACGC-CAGACGTGAAGTGTCTTGCGACTGGT----TTTCGGACCGG--ATGTGAGTCCTTTGAAATGTACTT-TACTGTACT-TCTCTTTGCTCGAAAAGCG-TGGCGTTGCTAATTGTGGAGGCTGCCAGTGTGGCCAGTC-GGCGACCGGTTTTGTCTGCTGTAGCGTTT-AATGGAGGAGTGTTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGACGTTTTTCC-TGCTGT-GGCGTGATGGACTGGTGAACCGTAGCTGTGCAT--GGCTTGGCCTTTGAATTGGCTTTTGCTGTT-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTT-GTGTTGGTAGC----TTCGGTTGC-------TGGCATCTCAA Phytophthora_sinensis CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAAC--AAG-TAGTT-GGGGGCCTGCTCTGTGTGGCTAGCTGTCGATGTCAAAGTCGGCGACTGGCTGC-TATGTGGCGGGCTCTATCA------TGGCGATTGGTTTGGGTCCTCCTCGTGGGGAACTGGATCATGAGCCC------ACCTTTTAAACCCATTCTT-GATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAGGTGTCTTGCGGCGCGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCAGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTCC-TGCTGT-GGTGGTATGGGCTGGTGAACCGTAGTTGTGCGA--GGCTTGGCTTTTGAACCGGCG-GTGTTG-TAGCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTCTGTGTTGTCT-CTGCG-GCTT-GCTGTG---GAGGTAGCATCTCAA Phytophthora_sojae CCACACCTAAGAAA-CTTTCCACGTGAACCGTATCAAC--AAG-TAGTT-GGGGGCCTGCTCTGTGTGGCTGTCTGTCGATGTCAAAGTCGGCGGCTGGCTGC-TGTGTGGCGGGCTCTATCA------TGGCGATTGGTTTGGGTCCTCCTCGTGGGGAACTGGATCATGAGCCC------ACTTTTTAAACCCATTCTT-AAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAGGTGTCTTGCGGCGTGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCGGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTCC-TGCTGT-GGCGGTATGGGCTGGTGAACCGTAGCTGTGTGA--GGCTTGGCTTTTGAACCGGCG-GTGTTG-TTGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTCTGTGTTGTCT-CTGCG-GCTT-GCTGCG---GAGGTGGCATCTCAA Phytophthora_sp._O_group CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCCTT-AAGAT-TGGGAGCTTGCTCGGCGGCGTGCGTGCTGGCCTGTAATGGGTCGGCGTGCTGC-TGCTGGGCGGGCTCTATCATG-----GGCGAGCG-TTTGGG----CTTCG-----GCTCGAGCTAGTAGC----TTT-TTCTTTTAAACCCCTTCTTTAATTACTGAA-ATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTCGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGTTTTCTTCCTTCCGTGTAGTCGGTGGA-GGATATGC-CAGACGTGAAGTGTCTTGCTAGCGGT---CTTTCGAGTCTGC-CGGCGAGTCCTTTGAAATGTACTG-AACTGTACTCTCTCTTTGCTCGAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCCCGTATGGCCAGTC-GGCGACCGGTTT-GTTAGCTGTAGTATAT-ACTGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATCTGCTTATTGGGTGCTTTTCC-TGCTATTGGCGGTACAAACTGGTGAACCGTAGCTGTGTGG--AGCTTGGCTTTTGAATCGGCT-TTGCT--T-GCGAAGTAGAGTGGCG---GCTTCGGC-----------TG----CCGAGGGGTCGATCCATTTTGGGAAAT-TAT-GTGTGTGCGGC----TTCGTGCTGC------GCGCATCTCAA Phytophthora_sp._asparagus_pathogen CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCCAAT-TAG-T-TGGGGGCTTGCTCTGGCGTGCGGCTGTTGACCTGTAATGGGCTGACG-GCTGC-TGCTGGGCGGGCTCTATCAAA-----GGCGAGCG-TTTGGA----CCTCG-----GTCCGAGCTAGTAGC----TTTACTTTTTTAAACCCATTCTTTACATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAACCTTGGCTTTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAAGTGTCTTGCTGCTGGT---CTTTCGAGTCCGG-CGGTGAGTCCTTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCAAAAAGCG-TGGCGTTGCTGGTTGTGGAGGCTGCCTGCGTGGCCAGTC-GGCGACCGGTTT-GTCTGCTGTGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGAATGTTTTTCC-TGCTGT-GGCGGTACGAACTGGTGAACCGTAGCTGTGTGT--GGCTTGGCTTTTGAACCGGCT-TTGCTGTTTGCGAAGTAGAGCGGCG---GCTTCGGC-----------TG----TCGAGGGGTCGATCCATTTTGGGAAAC-TTTTGTGTGTGCGGC----TTCG-GCTGC------GCGCATCTCAA Phytophthora_syringae CCACACCTAAAAAA-CTT-CCACGTGAACCGTATCAAAACCCTTTTATTGGGGGCTTCTGTCTGGT----------CTGGC---------TTCGGCTGGA---TTGGGTGGCG-GCTCTATCAT------GGCGACCGCTCTGAG----CTTCG---G-CCTGGAGCTAGTAGCCCACT------TTTTAAACCCATTCTTAATT-ACTGAACAAACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGATGCACAGACGTGAAGTGTCTTGCGACTGGG----CTTCGGCTCGG--CTGCGAGTCCTTTTAAATGTAC-AGAACTGTACT-TCTCTTTGCTCGAAAAGCG-TTATATTACTGGTTGTGGAGGCTGCCTGTGCGGCAAGTC-GGCGACCGGTTT-GTTAACTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGATGGCTTCGGCTGAACTGA-CGCTTATTGAGTACTTTTCC-TGCTGT-GGTGGTACGAACTGGTGAACCGTAGCTGTGTTT--GGCTTGGCTTTTGAACTGGCG-ATGTGGT--GCGAAGTAGAGTGACGGTTGTTCCGGCGCAAGCTGGAGTGACTGTCGAGGG-TCGATCCAT-TTGGGAAATTTTGTGTCTGTGCGA----CTTCGGTTGCGT------GGCATCTCAA Phytophthora_tentaculata CCACACCTAAAAAA--TTTCCACGTGAACCGTTTCAACC--AA-AAGTT-GGGGGTCTTGTTTGGC-G-GTGACTGCTGGC-T-TTAT-TGCTGGC-GGCTGC-TGCTGGACGAGCCCTATCAT------GGCGAAAG-TTTGGA----CTTCG-----GTCTGAGCTAGTAGT----TATTA--TTTTAAACCCATTCCT-TAATACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGAAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGACTTTCTTTCTTCCGTGTAGTCGGTGGA-GGAGATGT-CAGATATGAAGTGTCTTGCGGTTGGT----TTTCGGACCGA--CTGTGAGTCCTTTTAAATGTACTA-AACTGTACT-TCTCTTTGCTCCAAAAGTGGTGGCATTGCTGGTTGTGGAGGCTGTTACTGTGGCCAATT-GGCGACCGGTTT-GTCTGCTGCGGCGTT--AATGGAAGAGTGCTTGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGGTGTTTATCC-TGCTGT-GGCGTGATGGACTGGTGAACCATAGCTCGGTGA----CTTGGCCTTTGAATCGGCTTTTGCTGTT-GCGAAGTAGAGTGGCG---ACTTCGGT-----------TG----TCGAGGG-TCGATCCAT-TTGGGAAA--TTT-GTGTGTACTTC-------GGTAT----------GCATCTCAA Phytophthora_trifolii CCACACCTAAAAAA-CTTTCCACGTGAACCGTATCAACCTTTT-AAATTGGGAGCTTTCGTCTGGC----------CGGCCGG-----CTTTTGGCTGG----TTGGGCGGCG-GCTCTATCAT------GGCGACCGCT-TGGG----CCTCG---G-CTTGG-GCTAGTAGCTTC-T------TTT-AAACCCATTCCTAATT-ACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACAATAAACTTGGCTCCCTTCCTTCCGTGTAGTCGGTGGATGGGGACGCGCAGATGTGAAGTGTCTTGCGGCTGGT----CTTCGGTCCGG--CTGCGAGTCCTTTGAAATGTACTA-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGCTGGTTGTGGAGGCTGCCTGTGTGGCATGTC-GGCGACTGGTTT-GTCTGCTGCAGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAGA-CGCTTATTGGGTGCTTTTCC-TGCTGT-GGTAGTATGGACTGGTGAACCGTAGCTGTGCTA--GGCTTGGCGTTTGAACTGGCG-GTGTGGT--GCGAAGTAGGGTGTC---TGTTCCGGCGCAAGCTGGGGTG---GGCGAGGG-TCGATCCAT-TTGGGAAA-ATTGTG----TGCG-----CTTCGG---CGC-------GCATCTCAA Phytophthora_vignae CCACACCTAAAAAAACTTTCCACGTGAACCGTTTCAAC--AAG-TAGTT-GGGGGCCTGCTCTGTGTGGCTAGCTGTCGATGTCAAAGTCGGCGACTGGCTGC-TATGTGACGGGCTCTATCA------TGGCAATTGGTTTGGGTCCTCCTCGTGGGGAACTAGATCATGAGCCC------ACTTTTTAAACCCATTCTT-GATTACTGAATATACTGTGGGGACGAAAGTCTCTGCTTTTAACTAGATAGCAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGGATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTAGTCCTGGGAGTATGCCTGTATCAGTGTCCGTACATCAAACTTGGCTCTCTTCCTTCCGTGTAGTCGGTGGATGGAGACGC-CAGACGTGAGGTGTCTTGCGGCGCGG---CCTTCGGGCTGC--CTGCGAGTCCCTTGAAATGTACTG-AACTGTACT-TCTCTTTGCTCGAAAAGCG-TGACGTTGTTGGTTGTGGAGGCTGCCTGTATGGCCAGTC-GGCGACCAGTTT-GTCTGCTGCGGCGTTT-AATGGAGGAGTGTTCGATTCGCGGTATGGTTGGCTTCGGCTGAACAATGCGCTTATTGGATGCTTTTCC-TGCTGT-GGCGGTATGGGCTGGTGAACCGTAGTTGTGCAA--GGCTTGGCTTTTGAACCGGTG-GTGTTG-TTGCGAAGTAGGGTGGCG---GCTTCGGC-----------TG----TCGAGGG-TCGATCCAT-TTGGGAACTTTGTGTTGTCT-CTGCG-GCTT-GCTGTG---GAGGTAGCATCTCAA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'ITS+') = N: 1-889; CODONPOSSET CodonPositions (CHARACTERS = 'ITS+') = N: 1-889; END; BEGIN TREES; TITLE Tb5793; LINK TAXA = Taxa1; TRANSLATE 1 Phytophthora_inflata, 2 Phytophthora_iranica, 3 Phytophthora_katsurae, 4 Phytophthora_lateralis, 5 Phytophthora_medicaginis, 6 Phytophthora_megakarya, 7 Phytophthora_megasperma, 8 Phytophthora_melonis, 9 Phytophthora_mirabilis, 10 Phytophthora_multivesiculata, 11 Phytophthora_nicotianae, 12 Phytophthora_palmivora, 13 Phytophthora_phaseoli, 14 Phytophthora_porri, 15 Phytophthora_primulae, 16 Phytophthora_pseudotsugae, 17 Phytophthora_quercina, 18 Phytophthora_sinensis, 19 Phytophthora_sojae, 20 Phytophthora_sp._asparagus_pathogen, 21 Phytophthora_sp._O_group, 22 Phytophthora_syringae, 23 Phytophthora_tentaculata, 24 Phytophthora_infestans, 25 Phytophthora_ilicis, 26 Phytophthora_idaei, 27 Phytophthora_humicola, 28 Phytophthora_heveae, 29 Phytophthora_gonapodyides, 30 Phytophthora_fragariae_var._rubi, 31 Phytophthora_fragariae_var._fragariae, 32 Phytophthora_erythroseptica, 33 Phytophthora_drechsleri, 34 Phytophthora_cryptogea, 35 Phytophthora_colocasiae, 36 Phytophthora_clandestina, 37 Phytophthora_citrophthora, 38 Phytophthora_citricola, 39 Phytophthora_cinnamomi, 40 Phytophthora_capsici, 41 Phytophthora_cambivora, 42 Phytophthora_cajani, 43 Phytophthora_cactorum, 44 Phytophthora_botryosa, 45 Phytophthora_arecae, 46 Peronospora_sparsa, 47 Phytophthora_vignae, 48 Phytophthora_trifolii; TREE Fig._2 = [&R] (((((19,((8,18),(42,47))),(39,(41,(30,31)))),(4,((22,(14,15)),((5,48),(33,(32,34)))))),((46,(6,(45,12))),((20,((7,29),(21,27))),(3,28)))),(17,25),(((43,(16,26)),((11,(23,(2,36))),(13,(9,24)))),(10,((1,38),(40,(35,(44,37))))))); END; BEGIN TREES; TITLE Tb5794; LINK TAXA = Taxa2; TRANSLATE 1 Phytophthora_infestans, 2 Phytophthora_cactorum, 3 Peronospora_rubi, 4 Phytophthora_palmivora, 5 Phytophthora_cryptogea, 6 Phytophthora_sojae, 7 Phytophthora_cambivora, 8 Phytophthora_insolita, 9 Phytophthora_richardiae, 10 Phytophthora_macrochlamydospora, 11 Halophytophthora_batemanensis, 12 Pythium_vexans, 13 Pythium_undulatum, 14 Pythium_aphanidermatum, 15 Pythium_graminicola, 16 Pythium_dissotocum, 17 Pythium_ultimum, 18 Pythium_irregulare, 19 Albugo_candida, 20 Dictyuchus_sterilis, 21 Achlya_bisexualis, 22 Thraustotheca_clavata, 23 Achlya_intricata, 24 Saprolegnia_ferax, 25 Phytophthora_capsici, 26 Phytophthora_megasperma; TREE Fig._1 = [&R] (19,(24,(20,(23,(22,21)))),(((18,17),(13,(14,(16,15)))),((12,11),((8,(10,9)),((5,(7,6)),(((4,3),(2,1)),(26,25))))Phytophthora))); END;