#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 11, 2021; 22:23 GMT TreeBASE (cc) 1994-2008 Study reference: Barnes I., Roux J., Wingfield B.D., Dudzinski M., Old K., & Wingfield M.J. 2003. Ceratocystis pirilliformis, a new species from Eucalyptus nitens in Australia. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S983] BEGIN TAXA; TITLE Taxa1; DIMENSIONS NTAX=18; TAXLABELS Ceratocystis_albofundus_AF043605 Ceratocystis_albofundus_AF264910 Ceratocystis_coerulescens Ceratocystis_douglasii Ceratocystis_eucalypti Ceratocystis_fimbriata_AF264904 Ceratocystis_fimbriata_AF395679 Ceratocystis_fimbriata_AF395693 Ceratocystis_fimbriata_AF395696 Ceratocystis_fimbriata_AF453438 Ceratocystis_laricicola Ceratocystis_moniliformis Ceratocystis_paradoxa Ceratocystis_pirilliformis_AF427104 Ceratocystis_pirilliformis_AF427105 Ceratocystis_pirilliformis_AF427106 Ceratocystis_resinifera Ceratocystis_virescens ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M118] TITLE ITS_and_5.8S_rDNA; LINK TAXA = Taxa1; DIMENSIONS NCHAR=573; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ceratocystis_albofundus_AF043605 ATGATTGGAAGAAA-----GAGTG-AGCAGAAGAG---GCCT-------TGTGGGGGC-CCAAAAATCATTTC------TGC-TTAT----------------------------GC-ATTCTTCATCATCGCTCCA--------GTGGGGCTTCTGCG--CCCT-TGGTGAGCGCGGGGGG---CCCCGGGGGCCC----CCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TG-GATGGG----CAGGGGAAGAGGAACAAGTTGAGG-TGGC-------TTTGGTTACCTCAATTATTACCCGATCGTAATGAGGCGGGGGCTGGATTCCTGTTTTGAGAGCAGCTCCAC----------GGGGGG-CCCGGGGG--CTATGGGAACAG Ceratocystis_albofundus_AF264910 ATGATTGGAAGAAA-----GAGTG-AGCAGAAGAG---GCCT-------TGTGGGGGCGCCAAAAATCATTTC------TGC-TTAT----------------------------GC-ATTCTTCATCATCGCTCCA--------GTGGGGCTTCTGCG--CCCT-TGGTGAGCGCGGGGGG---CCCCGGGGGCCC----CCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATTTTGAAGCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TG-GATGGG----CAGGGGAAGAGGAACAAGTTGAGG-TGGC-------TTTGGTGACCTCAATTATTACCCGATCGTAATGAGGCGGGGGCTGGATTCCTGTTTTGAGAGCAGCTCCAC----------GGGGGG-CCCGGGGG--CTATGGGAACAG Ceratocystis_coerulescens TTCGCGAGACCTCG--TT-GGGGG-----------------------CATGAT-GGGAATCAA---------------TGGA-AG--GGA--CCCCCCCTCCAGT-GATTAATCA------------------------------GCGCG-CC-----CCCCTCTGTGGG--CCGCGGG----TGCACACCGGG--CGGGGTCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGAATTTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATAGTGGGGGGAGGG---------ATAAATTATTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GC-GGGCGGGG---CTATGGGACCCT Ceratocystis_douglasii TTCGCGAGACCTCG-CTTTGGGG------------------------CATGAT-GGGAATCAA---------------TGGA-AG---------CCCCCTCCAGT-GATTAAGCA------------------------------GCGCG-CC------CCCCCTGTGGG--CCGCGGG----TGCTCACCGGG--CGGG-TCGGATGACAGA--ATCGCCCCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTATTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGGG---CTATGGGACCCT Ceratocystis_eucalypti TTCGCGAGACCTCG-CTT-GGTG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCTCTCCAGTGGATTAAGCA------------------------------GCGGG-CT--------CCCTGTGGGGG---CGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTTATGG-----------AAGAGGAACAACTGTATCGTGGC------------GACGATAAATTATTACCCGATCGTAATGAGGCG----CTGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGG----CTATGGGACCCT Ceratocystis_fimbriata_AF264904 TTCGAGAGACCTAG-CTT-GCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACCAAAC--AAATC--------TTATGATTCATCAGCGGC----------AGTGT--CTTCTGCG--CCCTGTGGGG-CGGCGGGG---TGCAC-GGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-GGCGGTGGG-------TGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGATCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG Ceratocystis_fimbriata_AF395679 TTCGAGAGACCTAG-CTT-GCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACC------AAATC--------TTATGATTCATCAGCG-C----------AGTGT--ATTCTGAG--CCCTGTGG---C-GCGGGGG--TTCACGGGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCC-A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAACTGTTGGG------AGGTGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG Ceratocystis_fimbriata_AF395693 TTCGAGAGACCTCG-CTTTCGGTGGTGCCGCCACGACCC---------ATGAT-GGGAAG-AAGGGG-CAAAAACCTTCGTTGCGCCCC--GA-ACAAC-----------TGGGTGCCATGCTTCCTCAGCG-C----------AGTGG--CTGCTGC--CCGGTG-GGG--CGGGGGGGGGCTGCACCC-GGGA-CGGG-TCGGATGACAGA--ATCG--CCT-GC--GCCCCC--A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC--GCCTGGGGG------TGGAAGAGGAACAAGTTGAGG-TGAGGGGGGGGGGCGCTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGGCCCC--------------GGGCGGGGGG-TCTCTGGGACCAG Ceratocystis_fimbriata_AF395696 TTCGAGAGACCTCG-CTTTG-GTGGTGC-GCCACTACCT---------ATGAT-GGGAAG-AAGGGGACATTTTAGGGT-TGAGGCCCCCA-A-ACCACCAAAAAATCCCTG--TGCCATGATTAATCATCG-C----------AGTGG--CTTCTGC---CCCTGTGGGG-CGGGGGGGGGCTGCACCC-GGGA-CGGG-TCGGATGACAGA--ATCG-CCCT-GC--GCCCCC--A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCCGCTGGGGGCGGGGGGTGGAAGAGGAACAAGTTGAGG-TGGGC-----------TGACATCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCTGCCCC--------------GGGCGGGGGG-TCTCTGGGACCAG Ceratocystis_fimbriata_AF453438 TTCGAGAGACCTAG-CTTTGCGTGGAGCAGACACGACCG---------ATGAG-GGGAAG-AAG----CAAATTTGG---TG------------ACCACAC--AAATC--------TTATGATTCATCAGCGGC----------AGTGGT-ATTCTGAG--CCCTGTGGGGGCGGCGGGG---TGCAC-GGGGG-------TCGGATGACAGA--ATCG--CCT-GC--GCCCCCCCA--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCAC-TGTGGGG------AGGTGGAATAGGAACAAGTTGAGG-TG-----------TTTTGACCTCAATTATTACCCGAGCGTAATGAGGCG----CTGGATTCCTGTTTTGAGAGCAGCGCCCC-------------GGGTGCCGGGGG--CTCTGGGACCAG Ceratocystis_laricicola TTCGCGAGACCTCG-CTT-GGGGGG----------------------CATGAT-GGGAATCAAG--------------TGGA-AG----------CCCCTCCAGTTGATTAAGCA------------------------------GCGGG-CA------CCCCCTGTGGG--CCGCGGG----TGCACACCGGGCGCGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCA-TCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTATTACCCGATCGTAATGAGGAC----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGGGGGGCTATGGGACCCT Ceratocystis_moniliformis TTCGGGAGACC-GGG-TTC-------------------TCCCTCGTACCTGATACGGAATAAAG----------------TG----------------------------------TTTTATTTAATCAGC-------------TGTGGA------------CCTGTAGGGGGCGCG--------CCCACCGGG--CGG--TCGGATGACAG--CATCGGG----GC--GCCCG---AGCGGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTTCATCAGCTGTGATGAAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG------AGG-----AGGAACACATTGAGA-TGCG--------------ATATAAATTGTGACCCGATCGTAATGAGAGG----CTCGAT-CAGGGTTTGAGAGCAGCCCCT--------------GGG---CGGAGG--ATCTGGGACCCT Ceratocystis_paradoxa TTCGGGAGACCTGG-CTT-GGTG------------------------AATGAT-GGGAATCAAG-------------TTGGTAAACGGGATTAAGCATCTCCC-T--------------------------------------------------------CCCTGTGGG---CGCGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCT-GCCCGCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCTGTCAGACCGTCGTACCGTGGGACCTATCTCGGATCTTGAATCATCGGTGATTCAAGCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AATAGGAACAACTTTAT--AGGG----------------ATAAATTATTACCCGACCGTAATGAGGCG----CTGGAT-CATGGTTTGATAGCAGCC-----------------GGGGAGAGG-----CTATGGGACCCT Ceratocystis_pirilliformis_AF427104 TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAAACACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCC-CCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGGG-------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG Ceratocystis_pirilliformis_AF427105 TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAA-CACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCCCCCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGG--------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG Ceratocystis_pirilliformis_AF427106 TTCGGGAGACCTAGGCTT-GCGTGGAGCTGACACGACCGCCCTCCGCGATGAT-GGGAAGC-AGGAAAAAAAAA-CACATG--TTATTGGAGAGACCAGGGGGGG-----TGGG-GTTCTGCTTCATCAGCGCCCCAGCAGGGGTGTGGG-CTTCTGCCCCCCCTGTGGG--CCGCGGGGG-C-GCACCC-GGGA-CGGG-TCGGATGACAGACCATCG-CCC-CGCC-GCCC----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCCAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCTGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCACCTGCGGGGG--------TGGAAGAGGAACAAGTTGAGG-TGG-------------TGACATCAATTATTACCCGAGCGTAATGAGGCC----CTGGATTCCTGTTTTGAGAGCAGCGCCCAACCGCCGGGGGGGGGGTTCCGGGGGG-CTCGGGGACCAG Ceratocystis_resinifera TTCGCGAGACCTCG-CTT-GGTG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCCCTCCAGT-GATTAAGCA------------------------------TCGGG-CC--------CCCTGTGGG---CGCGGG----TGCACACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTGATGG-----------AAGAGGAACAACTTTATCGTGG-----------------ATAAATTCTTACCCGATCGTAATGAGGCG----CGGGAT-CATGGTTTGAGAGCAGCC-----------------GCGGG-CGGG----CTATGGGACCCT Ceratocystis_virescens TTCGCGAGACCTCG-CTT-GCGG------------------------CATGAT-GGGAATCAA---------------TGGA-AG----------CCTCTCCAGT-GATTAAGCA------------------------------GCGGGGC---------CCCTGTGGGGGGGGCGG-----TGCCCACCGG---CGG--TCGGATGACAGA--ATCGG-CCTCGCC-GCC-----A--GGCCCCTGGGTCCTCCTAACGTGTGGAATGTGCATCGTACGACCACCTATCATACCCGATACGCTAGCCGAGACCGGATCACCGGTCAGACCGTCGTACCGTGGGACCTATCTCGGATATTGAATCAGCGGTGATTCAATCGATTGAGTTACATAGTCGGGTCTTCTGTCCA--TGTTATGG-----------AAGAGGAACAACTTGAGGAGGG--------------GTCCTCAATTCTTACCCGATCGTAATGAGGCG----CTGGAT-CATGGTTTGAGAGCAGCC-----------------GCGTG-CGGG----CTCTGGGACCCT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ITS_and_5.8S_rDNA) = N: 1-573; CODONPOSSET CodonPositions (CHARACTERS = ITS_and_5.8S_rDNA) = N: 1-573; END; BEGIN TREES; TITLE Tb6467; LINK TAXA = Taxa1; TRANSLATE 1 Ceratocystis_virescens, 2 Ceratocystis_resinifera, 3 Ceratocystis_pirilliformis_AF427106, 4 Ceratocystis_pirilliformis_AF427105, 5 Ceratocystis_pirilliformis_AF427104, 6 Ceratocystis_paradoxa, 7 Ceratocystis_moniliformis, 8 Ceratocystis_laricicola, 9 Ceratocystis_fimbriata_AF453438, 10 Ceratocystis_fimbriata_AF395696, 11 Ceratocystis_fimbriata_AF395693, 12 Ceratocystis_fimbriata_AF395679, 13 Ceratocystis_fimbriata_AF264904, 14 Ceratocystis_eucalypti, 15 Ceratocystis_douglasii, 16 Ceratocystis_coerulescens, 17 Ceratocystis_albofundus_AF264910, 18 Ceratocystis_albofundus_AF043605; TREE Fig._1 = [&R] ((((((((16,15),8),2),6),14),1),((17,18),((5,(4,3)),((11,10),(13,(12,9)))))),7); END;