#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 16:37 GMT TreeBASE (cc) 1994-2008 Study reference: Stenroos S., Laukka T., Huhtinen S., Döbbeler P., Myllys L., Syrjänen K., & Hyvönen J. 2009. Multiple origins of symbioses between ascomycetes and bryophytes suggested by a five-gene phylogeny. Cladistics, 25: 1-15. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10143] BEGIN TAXA; TITLE M4735; DIMENSIONS NTAX=206; TAXLABELS Absconditella_sp Absconditella_sphagnorum Absconditella_sphagnorum_M24 Acarospora_schleicheri Acarosporina_microspora Acrospermum_adeanum_M133 Acrospermum_compressum_M151 Acrospermum_graminum Acrospermum_graminum_M152 Aleuria_aurantia Alternaria_alternata Arachnopeziza_variepilosa_M337 Baeomyces_placophyllus Bisporella_citrina_M253 Bombardia_bombarda Botryosphaeria_ribis Bryocentria_brongniartii_M139 Bryocentria_brongniartii_M190 Bryocentria_metzgeriae_M140 Bryochiton_microscopius_M331 Bryochiton_monascus_M218 Bryochiton_perpusillus_M202 Bryochiton_sp_M198 Bryoglossum_gracile Bryooscyphus_sp_M230 Bryoscyphus_dicrani_M141 Bulgaria_inquinans Byssochlamys_nivea Byssothecium_circinans Calicium_viride Candida_albicans Capnodium_citri Capronia_mansonii Capronia_pilosella Cephalotheca_sulphurea Ceratocystis_pilifera Cercophora_caudata Chaetomella_raphigera Cheilymenia_stercorea Cheilymenia_vitellina_M169 Coenogonium_luteum Coltricia_perennis Cordyceps_militaris Cudonia_circinans Cudoniella_clavus Curvularia_brachyspora Cyathicula_microspora_M267 Delphinella_strobiligena Dermatocarpon_luridum Diaporthe_phaseolorum Didymella_spp Diploschistes_scruposus Discinella_schimperi_M168 Discinella_schimperi_M191 Discinella_schimperi_M192 Discosphaerina_fagi Discula_destructiva Dothidea_insculpta Epibryon_bryophilum_M2 Epibryon_diaphanum_M122 Epibryon_hepaticola_M10 Epibryon_hepaticola_M224 Epibryon_intercapillare_M125 Epibryon_interlamellare_M1 Epibryon_interlamellare_M32 Epibryon_plagiochilae_M187 Epibryon_sp_DM274 Epibryon_sp_EM175 Epibryon_turfosorum_M292 Epiglia_gloeocapsae_M193 Epiglia_gloeocapsae_M257 Epiryon_interlamellare_M223 Exophiala_jeanselmei Fabrella_tsugae Fungal_endophyte_2712 Fungal_endophyte_2834 Fungal_endophyte_3277 Fungal_endophyte_3377 Fungal_endophyte_4221 Fungal_endophyte_4245 Fungal_endophyte_4466 Fungal_endophyte_4573 Fungal_endophyte_4603 Fungal_endophyte_4780 Fungal_endophyte_4939 Fungal_endophyte_4947A Fungal_endophyte_5095 Fungal_endophyte_5246 Fungal_endophyte_5607 Fungal_endophyte_5627 Gautieria_otthii Geoglossum_nigritum Glyphium_elatum Gyalecta_ulmi Heyderia_abietis Hyaloscypha_albohyalina_M259 Hyaloscypha_aureliella_M234 Hyaloscypha_aureliella_M235 Hyaloscypha_daedaleae Hyaloscypha_fuckelii_M233 Hyaloscypha_hepaticola_M171 Hyaloscypha_hepaticola_M339 Hyaloscypha_paludosa_aff_AM178 Hyaloscypha_paludosa_aff_AM228 Hyaloscypha_paludosa_aff_AM229 Hyaloscypha_paludosa_aff_BM132 Hyaloscypha_sp_AM19 Hyaloscypha_sp_AM25 Hyaloscypha_sp_BM20 Hyaloscypha_sp_BM288 Hyaloscypha_vitreola_M236 Hyaloscypha_vitreola_M39 Hymenoscyphus_fructigenus_M159 Hymenoscyphus_scutula Hymenoscyphus_sp_AM33 Hymenoscyphus_sp_AM35 Hymenoscyphus_sp_BM293 Hymenoscyphus_sp_BM329 Hymenoscyphus_sp_M315 Hymenoscyphus_sp_M68 Hypocrea_citrina Hypoxylon_fragiforme Lachnum_virgineum Lamprospora_sp_M185 Lasiosphaeria_ovina_M176 Lecanactis_abietina Lempholemma_polyanthes Lentinula_lateritia Leptogium_cyanescens Leptomeliola_ptilidii_M186 Lizonia_sexangularis_M179 Lizonia_sexangularis_M222 Lobaria_Pseudocyphellaria Lophodermium_pinastri Merimbia_ingelheimense Microascus_trigonosporus Microglossum_rufum Microscypha_sp_M147 Microscypha_sp_M155 Mitrula_brevispora Mniaecia_jungermanniae_M145 Mniaecia_nivea_M167 Monascostroma_sphagnophilum_M23 Morchella_esculenta Mycosphaerella_punctiformis Myriangium_duriaei Nectria_cinnabarina Neobulgaria_lilacina_M258 Neolecta_vitellina Neurospora_crassa Octosporella_erythrostigma_M144 Octosporella_jungermanniar_M221 Oidiodendron_tenuissimum Ombrophila_violacea Orbilia_auricolor Orbilia_vinosa Otidea_onotica Peltula_umbilicata Pertusaria_amara Petractis_luetkemuelleri Peziza_quelepidotia Pezoloma_ciliifera_M283 Pezoloma_ciliifera_M295 Phaeosphaeria_avenaria Phaeotrichum_benjaminii Phialophora_pedrosoi Phoma_herbarum Piedraia_hortae Pilidium_concavum Placopsis_perrugosa Placynthium_nigrum Placythiella_icmalea_M173 Pleomassaria_siparia Pleopsidium_chlorophanum Pleostigma_jungermannicola_M174 Porpidia_albocaerulescens Preussia_terricola Pseudonectria_rousseliana Puttea_margaritella_M149 Pyrenula_cruenta Rhytisma_spp Saccharomyces_cerevisiae Saitoella_complicata Scleroconidioma_sphagnicola Sclerotinia_sclerotiorum Setomelanomma_holmii Setosphaeria_monoceras Seynesia_erumpens Sistotrema_muscicola Sordaria_macrospora Spathularia_flavida Sphaerophorus_globosus Stephanonectria_keithii Stereocaulon_spp Stictis_radiata Stylodothis_puccinioides Teichospora_sp_M195 Trematosphaeria_heterospora Trichoglossum_hirsutum Trizodia_acrobia_M157 Trizodia_acrobia_M160 Verrucaria_pachyderma Verruculina_enalia Vibrissea_truncorum Westerdykella_cylindrica Xylaria_acuta ; END; BEGIN TREES; TITLE Tb10744; LINK TAXA = M4735; TREE Fig._1 = [&R] ((Coltricia_perennis,(Gautieria_otthii,(Lentinula_lateritia,Sistotrema_muscicola))),((Neolecta_vitellina,(Candida_albicans,Saccharomyces_cerevisiae)),(Saitoella_complicata,(Peziza_quelepidotia,((Morchella_esculenta,(Fungal_endophyte_4245,((Octosporella_erythrostigma_M144,(Lamprospora_sp_M185,Octosporella_jungermanniar_M221)),(Otidea_onotica,(Aleuria_aurantia,(Cheilymenia_stercorea,Cheilymenia_vitellina_M169)))))),((Orbilia_auricolor,Orbilia_vinosa),((Trichoglossum_hirsutum,Geoglossum_nigritum),(((Trizodia_acrobia_M157,Trizodia_acrobia_M160),((Bulgaria_inquinans,(Mniaecia_jungermanniae_M145,Mniaecia_nivea_M167)),(((Lophodermium_pinastri,(Fungal_endophyte_3277,Fungal_endophyte_4573),(Cudonia_circinans,Spathularia_flavida)),(Chaetomella_raphigera,Pilidium_concavum)),(((Microscypha_sp_M147,Microscypha_sp_M155),(Sclerotinia_sclerotiorum,(Fabrella_tsugae,Heyderia_abietis))),((((Cudoniella_clavus,(Ombrophila_violacea,(Hymenoscyphus_fructigenus_M159,Hymenoscyphus_scutula))),(Cyathicula_microspora_M267,(Bryoscyphus_dicrani_M141,Bryooscyphus_sp_M230))),((Oidiodendron_tenuissimum,Neobulgaria_lilacina_M258),(Bisporella_citrina_M253,Rhytisma_spp))),(((Lachnum_virgineum,Fungal_endophyte_5627),((Hymenoscyphus_sp_BM329,Hymenoscyphus_sp_BM293),(Fungal_endophyte_4603,(Hyaloscypha_paludosa_aff_BM132,(Hyaloscypha_paludosa_aff_AM178,Hyaloscypha_paludosa_aff_AM228,Hyaloscypha_paludosa_aff_AM229))))),((Bryoglossum_gracile,((Hyaloscypha_aureliella_M234,Hyaloscypha_aureliella_M235),(Hyaloscypha_fuckelii_M233,(((Hyaloscypha_sp_AM19,Hyaloscypha_sp_AM25),((Hyaloscypha_vitreola_M236,Hyaloscypha_vitreola_M39),(Hyaloscypha_daedaleae,(Hyaloscypha_sp_BM20,Hyaloscypha_sp_BM288)))),(Hyaloscypha_albohyalina_M259,(Hyaloscypha_hepaticola_M171,Hyaloscypha_hepaticola_M339)))))),(Vibrissea_truncorum,(((Hymenoscyphus_sp_AM33,(Hymenoscyphus_sp_AM35,Hymenoscyphus_sp_M68)),((Mitrula_brevispora,(Microglossum_rufum,(Epiglia_gloeocapsae_M193,Epiglia_gloeocapsae_M257))),(Discinella_schimperi_M168,Discinella_schimperi_M191,Discinella_schimperi_M192))),(Hymenoscyphus_sp_M315,(Arachnopeziza_variepilosa_M337,Pezoloma_ciliifera_M283,Pezoloma_ciliifera_M295))))))))))),(((((Pyrenula_cruenta,((Dermatocarpon_luridum,Verrucaria_pachyderma),((Pleostigma_jungermannicola_M174,Teichospora_sp_M195),(Fungal_endophyte_4466,((Epibryon_sp_DM274,(Epibryon_turfosorum_M292,((Epibryon_interlamellare_M1,Epibryon_interlamellare_M32),(Leptomeliola_ptilidii_M186,(Epibryon_plagiochilae_M187,(Epiryon_interlamellare_M223,(Epibryon_bryophilum_M2,Epibryon_diaphanum_M122))))))),((Epibryon_sp_EM175,(Epibryon_intercapillare_M125,(Epibryon_hepaticola_M10,Epibryon_hepaticola_M224))),(Glyphium_elatum,(Exophiala_jeanselmei,(Capronia_mansonii,(Capronia_pilosella,Phialophora_pedrosoi)))))))))),(Byssochlamys_nivea,Merimbia_ingelheimense)),((Lempholemma_polyanthes,Peltula_umbilicata),((Microascus_trigonosporus,((Cordyceps_militaris,Fungal_endophyte_4939),((Hypocrea_citrina,(Nectria_cinnabarina,Pseudonectria_rousseliana)),(Fungal_endophyte_4780,(Stephanonectria_keithii,(Bryocentria_metzgeriae_M140,(Bryocentria_brongniartii_M139,Bryocentria_brongniartii_M190))))))),((Hypoxylon_fragiforme,(Seynesia_erumpens,Xylaria_acuta)),(Ceratocystis_pilifera,((Diaporthe_phaseolorum,Discula_destructiva),(Cephalotheca_sulphurea,(Bombardia_bombarda,(Cercophora_caudata,Lasiosphaeria_ovina_M176,(Neurospora_crassa,Sordaria_macrospora)))))))))),((Myriangium_duriaei,((Discosphaerina_fagi,((Dothidea_insculpta,Stylodothis_puccinioides),(Delphinella_strobiligena,Scleroconidioma_sphagnicola,Fungal_endophyte_4947A))),(Capnodium_citri,((Mycosphaerella_punctiformis,(Fungal_endophyte_2712,Fungal_endophyte_4221)),((Piedraia_hortae,(Bryochiton_sp_M198,(Bryochiton_monascus_M218,Bryochiton_perpusillus_M202))),(Bryochiton_microscopius_M331,Monascostroma_sphagnophilum_M23)))))),(((Botryosphaeria_ribis,Fungal_endophyte_2834),(Fungal_endophyte_3377,(Verruculina_enalia,(((Trematosphaeria_heterospora,Fungal_endophyte_5095),(Preussia_terricola,(Phoma_herbarum,Westerdykella_cylindrica))),((Byssothecium_circinans,Pleomassaria_siparia),((Phaeosphaeria_avenaria,(Setomelanomma_holmii,Fungal_endophyte_5246)),((Didymella_spp,(Lizonia_sexangularis_M179,Lizonia_sexangularis_M222)),(Curvularia_brachyspora,(Alternaria_alternata,Setosphaeria_monoceras))))))))),((Lecanactis_abietina,(Phaeotrichum_benjaminii,Fungal_endophyte_5607)),(Acrospermum_graminum,(Acrospermum_graminum_M152,(Acrospermum_adeanum_M133,Acrospermum_compressum_M151))))))),((Acarospora_schleicheri,Pleopsidium_chlorophanum),((Puttea_margaritella_M149,(Porpidia_albocaerulescens,(Calicium_viride,(Sphaerophorus_globosus,Stereocaulon_spp),(Lobaria_Pseudocyphellaria,(Leptogium_cyanescens,Placynthium_nigrum))))),(((Placopsis_perrugosa,Placythiella_icmalea_M173),(Baeomyces_placophyllus,Pertusaria_amara)),((Gyalecta_ulmi,(Diploschistes_scruposus,(Coenogonium_luteum,Petractis_luetkemuelleri))),((Acarosporina_microspora,Stictis_radiata),(Absconditella_sp,(Absconditella_sphagnorum,Absconditella_sphagnorum_M24)))))))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr6287] END;