#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:39 GMT

TreeBASE (cc) 1994-2008

Study reference:
Mcpherson M., Fay M., Chase M., & Graham S.W. 2003. Parallel loss of a slowly evolving
intron from two closely related families of Asparagales. Systematic Botany,
29(2): 296-307.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1015]

BEGIN TAXA;
        TITLE  Combined_parsimony_analysis;
        DIMENSIONS NTAX=82;
        TAXLABELS
            Agapanthus_africanus
            Agapanthus_campanulatus
            Agave_Composite_taxon
            Alania_endlicheri
            Albuca_shawii
            Allium_altaicum
            Allium_siculum
            Aloe_vera
            Amaryllis_belladona
            Anemarrhena_asphodeloides
            Anigozanthos_flavidus
            Anthericum_liliago
            Aphyllanthes_monspeliensis
            Apostasia_stylidioides
            Asparagus_officinalis
            Asphodelus_aestivus
            Aspidistra_elatior
            Astelia_alpina
            Barbacenia_elegans
            Behnia_reticulata
            Bessera_elegans
            Blandfordia_punicea
            Borya_septentrionalis
            Brodiaea_Composite_Taxon
            Caesia_contorta
            Calochortus_mimimus
            Campynema_linearis
            Clivia_Composite_Taxon
            Convallaria_Composite_Taxon
            Corynotheca_micrantha
            Cyanastrum_Kabuyea_Composite_Taxon
            Cypripedium_Composite_Taxon
            Dianella_Composite_Taxon
            Doryanthes_excelsa
            Echeandia_sp.
            Empodium_veratrifolium
            Epipactis_helleborine
            Eriospermum_bayeri
            Eustephia_darwinii
            Freycinetia_scandens
            Geosiris_aphylla
            Gladiolus_Composite_Taxon
            Hanguana_malayana
            Helmholtzia_Composite_Taxon
            Hemerocallis_Composite_Taxon
            Hemiphylacus_latifolius
            Herreria_montevidensis
            Hyacinthus_orientalis
            Ipheion_Composite_Taxon
            Iris_Composite_Taxon
            Isophysis_tasmanica
            Ixiolirion_tataricum
            Kniphofia_uvaria
            Lanaria_lanata
            Leucocrinum_montanum
            Lilium_superbum
            Lomandra_Thysanotus_Composite_Taxon
            Maranta_Composite_Taxon
            Milla_magnifica
            Milligania_stylosa
            Milula_spicata
            Muilla_maritima
            Musa_Composite_Taxon
            Nolina_recurvata
            Ornithogalum_Composite_Taxon
            Pancratium_canariensis
            Pasithea_coerulea
            Philydrella_pygmaea
            Rhodohypoxis_millioides
            Simethis_mattiazii
            Sowerbaea_juncea
            Sphaeradenia_pendula
            Stemona_japonica
            Stypandra_glauca
            Tecophilaea_cyanocrocus
            Tricoryne_sp.
            Tulbaghia_Composite_Taxon
            Walleria_mackenzii
            Weldenia_candida
            Xanthorrhoea_Composite_Taxon
            Xeronema_callistemon
            Zephyra_elegans
            ;
END;

BEGIN TREES;
      TITLE Tb6535;
      LINK TAXA = Combined_parsimony_analysis;
      TREE Fig_3 = [&R] (((((((((((((Agapanthus_africanus,Agapanthus_campanulatus)Agapanthaceae,((((Allium_altaicum,Allium_siculum),Milula_spicata),(Ipheion_Composite_Taxon,Tulbaghia_Composite_Taxon))Alliaceae,(Amaryllis_belladona,(Clivia_Composite_Taxon,(Eustephia_darwinii,Pancratium_canariensis)))Amaryllidaceae)),((((Agave_Composite_taxon,((Anthericum_liliago,(Echeandia_sp.,Leucocrinum_montanum))Anthericaceae,(Behnia_reticulata,Herreria_montevidensis))),Anemarrhena_asphodeloides),(((Albuca_shawii,Ornithogalum_Composite_Taxon),Hyacinthus_orientalis)Hyacinthaceae,((Bessera_elegans,Brodiaea_Composite_Taxon),(Milla_magnifica,Muilla_maritima))Themidaceae)),(((Aphyllanthes_monspeliensis,(Asparagus_officinalis,Hemiphylacus_latifolius)Asparagaceae),(((Aspidistra_elatior,Convallaria_Composite_Taxon),Nolina_recurvata),Eriospermum_bayeri)Convallariaceae),(Lomandra_Thysanotus_Composite_Taxon,Sowerbaea_juncea)Laxmanniaceae))),((((Aloe_vera,Kniphofia_uvaria),Asphodelus_aestivus)Asphodelaceae,(((((Caesia_contorta,Corynotheca_micrantha),Tricoryne_sp.)Johnsonieae,(Hemerocallis_Composite_Taxon,Simethis_mattiazii)),(Dianella_Composite_Taxon,Stypandra_glauca)),Pasithea_coerulea)Hemerocallidaceae),Xanthorrhoea_Composite_Taxon)),Xeronema_callistemon),(((Geosiris_aphylla,Gladiolus_Composite_Taxon),Iris_Composite_Taxon),Isophysis_tasmanica)Iridaceae),(Doryanthes_excelsa,Ixiolirion_tataricum)),(Cyanastrum_Kabuyea_Composite_Taxon,(Tecophilaea_cyanocrocus,(Walleria_mackenzii,Zephyra_elegans)))Tecophilaeaceae),((Alania_endlicheri,Borya_septentrionalis)Boryaceae,(((Astelia_alpina,Milligania_stylosa)Asteliaceae,((Empodium_veratrifolium,Rhodohypoxis_millioides)Hypoxidaceae,Lanaria_lanata)),Blandfordia_punicea))),((Apostasia_stylidioides,Epipactis_helleborine),Cypripedium_Composite_Taxon)Orchidaceae)Asparagales,(((Anigozanthos_flavidus,Hanguana_malayana),((Helmholtzia_Composite_Taxon,Philydrella_pygmaea),Weldenia_candida))Commelinales,(Maranta_Composite_Taxon,Musa_Composite_Taxon)Zingiberales)),((Calochortus_mimimus,Lilium_superbum),Campynema_linearis)Liliales),((Barbacenia_elegans,Stemona_japonica),(Freycinetia_scandens,Sphaeradenia_pendula))Pandanales);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4172]


END;