#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 01, 2025; 6:30 GMT TreeBASE (cc) 1994-2008 Study reference: Moore M.J., Hassan N., Gitzendanner M., Bruenn R., Croley M., Vandeventer A., Horn J., Dhingra A., Brockington S.F., Latvis M., Ramdial J., Alexandre R., Piedrahita A., Xi Z., Davis C., Soltis P., & Soltis D. 2011. Analysis of a plastid inverted repeat supermatrix for 246 taxa improves confidence in deeper level angiosperm relationships. International Journal of Plant Sciences, 172(4): 541-558. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10503] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=246; TAXLABELS Acorus_americanus Acorus_calamus Acrotrema_costatum Aethionema_coridifolium Aethionema_grandiflorum Aextoxicon_punctatum Agrostis_stolonifera Albizia_julibrissin Alluaudia_ascendens Amborella_trichopoda Anethum_graveolens Anisophyllea_fallax Antirrhinum_majus Arabidopsis_thaliana Arabis_hirsuta Aristolochia_littoralis Asteropeia_micraster Atropa_belladonna Aucuba_japonica Austrobaileya_scandens Bambusa_oldhamii Barbarea_verna Basella_alba Berberidopsis_corallina Beta_vulgaris Bougainvillea_glabra Brachypodium_distachyon Brassica_rapa Buckleya_henryi Bulnesia_arborea Buxus_microphylla Cabomba_caroliniana Calycanthus_floridus Canella_winterana 'Capsella bursa-pastoris' Carica_papaya_GB Carica_papaya_Soltis Caryocar_glabrum Ceanothus_prostratus Celosia_cristata Celtis_occidentalis Ceratophyllum_demersum Cercidiphyllum_japonicum Chloranthus_spicatus Cicer_arietinum Cinnamomum_camphora Cissus_rotundifolia Citrus_sinensis Claytonia_virginica Clidemia_dentata Coffea_arabica Coriaria_nepalensis Cornus_florida Crossosoma_californicum Crucihimalaya_wallichii Cryptomeria_japonica Cucumis_sativus Curatella_americana Cuscuta_exaltata Cuscuta_gronovii Cuscuta_obtusiflora Cuscuta_reflexa Cycas_micronesica Cycas_taitungensis Cynomorium_songaricum Daphniphyllum_sp Daucus_carota Davilla_nitida Delosperma_napiforme Dendrocalamus_latiflorus Dillenia_indica Dioscorea_elephantipes Draba_nemorosa Drimys_granadensis Drosophyllum_lusitanicum Ehretia_acuminata Elaeis_oleifera Ephedra_equisetina Epifagus_virginiana Erythrospermum_phytolaccoides Eucalyptus_globulus Eucryphia_lucida Euonymus_americanus Fagopyrum_esculentum Festuca_arundinacea Ficus_sp Fragaria_ananassa Frankenia_pulverulenta Ginkgo_biloba Gisekia_africana Glycine_max Gnetum_parvifolium Gonystylus_bancanus Gossypium_barbadense Gossypium_hirsutum Guizotia_abyssinica Gunnera_manicata Halophytum_ameghinoi Hamamelis_japonica Hedyosmum_mexicanum Heisteria_concinna Helianthus_annuus Heuchera_micrantha Heuchera_sanguinea Hibbertia_banksii Hordeum_vulgare Hypseocharis_bilobata Ilex_cornuta Illicium_oligandrum Ipomoea_purpurea Itea_virginica Ixerba_brexioides Jasminum_nudiflorum Jatropha_curcas Juglans_nigra Kalanchoe_daigremontiana Keteleeria_davidiana Krameria_lanceolata Lactuca_sativa Leea_guineensis Lemna_minor Lepidium_virginicum Lilium_superbum Limonium_arborescens Liquidambar_styraciflua_Moore Liquidambar_styraciflua_Wang Liriodendron_tulipifera Lobularia_maritima Lolium_perenne Lonicera_japonica Lotus_corniculatus Lythrum_flagellare Malesherbia_linearifolia Mangifera_indica Manihot_esculenta Medicago_truncatula Megaleranthis_saniculifolia Melianthus_comosus Meliosma_aff_cuneifolia Mirabilis_jalapa Mollugo_verticillata Morus_indica Musa_acuminata Myriophyllum_spicatum Myrothamnus_flabellifolia Myrtus_communis Nandina_domestica Nasturtium_officinale Nelumbo_nucifera Nepenthes_alata Nerium_oleander Neurada_procumbens Nicotiana_sylvestris Nicotiana_tabacum Nicotiana_tomentosiformis Nuphar_advena Nymphaea_alba Ochna_mossambicensis Oenothera_argillicola Oenothera_biennis Oenothera_elata Oenothera_glazioviana Oenothera_parviflora Olimarabidopsis_pumila Opuntia_microdasys Oryza_nivara Oryza_sativa Oxalis_latifolia Paeonia_brownii Panax_ginseng Passiflora_biflora Pelargonium_hortorum Penthorum_chinense Pereskia_aculeata Peridiscus_lucidus Phalaenopsis_aphrodite Phaseolus_vulgaris Phaulothamnus_spinescens Phoradendron_leucarpum Phyllanthus_calycinus Phytolacca_americana Picea_sitchensis Picramnia_pentandra Pinus_koraiensis Pinus_thunbergii Pinzona_coriacea Piper_cenocladum Platanus_occidentalis Plumbago_auriculata Polygala_cruciata Polygonum_virginianum Populus_alba Populus_trichocarpa Portulaca_oleracea Prunus_persica Pterostemon_rotundifolius Quercus_nigra Quillaja_saponaria Ranunculus_macranthus Rhabdodendron_amazonicum Rhododendron_simsii Rhodoleia_championii Ribes_americanum Rivina_humilis Ruptiliocarpon_caracolito Saccharum_officinarum Sarcandra_chloranthoides Sarcobatus_vermiculatus Saruma_henryi Saururus_cernuus Saxifraga_stolonifera Scaevola_aemula Schinus_terebinthifolius Simmondsia_chinensis Solanum_bulbocastanum Solanum_lycopersicum Solanum_tuberosum Sorghum_bicolor Spathiphyllum_sp Spinacia_oleracea Spiraea_tomentosa Staphylea_colchica Stegnosperma_halimifolium Stellaria_media Stylobasium_spathulatum Talinum_paniculatum Tamarix_pentandra Tapiscia_sinensis Tasmannia_lanceolata Terminalia_catappa Tetracera_scandens Tetrastigma_yunnanense Trachelium_caeruleum Tradescantia_ohiensis Trifolium_subterraneum Trithuria_filamentosa Triticum_aestivum Trochodendron_aralioides Typha_latifolia Vallisneria_americana Vitis_vinifera Viviania_marifolia Welwitschia_mirabilis Ximenia_americana Yucca_schidigera Zea_mays ; END; BEGIN TREES; TITLE '246-taxon ML topology, 8 partitions'; LINK TAXA = Taxa; TREE Fig._1 = [&R] (((Ginkgo_biloba,(Cycas_micronesica,Cycas_taitungensis)),((Keteleeria_davidiana,(Picea_sitchensis,(Pinus_thunbergii,Pinus_koraiensis))),(Cryptomeria_japonica,(Ephedra_equisetina,(Gnetum_parvifolium,Welwitschia_mirabilis))))),(Amborella_trichopoda,((Trithuria_filamentosa,(Nuphar_advena,(Nymphaea_alba,Cabomba_caroliniana))),((Illicium_oligandrum,Austrobaileya_scandens),((((((((((Tetracera_scandens,((Davilla_nitida,(Pinzona_coriacea,Curatella_americana)),((Acrotrema_costatum,Dillenia_indica),Hibbertia_banksii))),(((Heisteria_concinna,((Buckleya_henryi,Phoradendron_leucarpum),Ximenia_americana)),((((Nepenthes_alata,Drosophyllum_lusitanicum),((Frankenia_pulverulenta,Tamarix_pentandra),((Polygonum_virginianum,Fagopyrum_esculentum),(Plumbago_auriculata,Limonium_arborescens)))),(Rhabdodendron_amazonicum,(Simmondsia_chinensis,(Asteropeia_micraster,(((Mollugo_verticillata,((Claytonia_virginica,Basella_alba),(Halophytum_ameghinoi,(((Opuntia_microdasys,Pereskia_aculeata),(Talinum_paniculatum,Portulaca_oleracea)),Alluaudia_ascendens)))),(Delosperma_napiforme,(Gisekia_africana,(Sarcobatus_vermiculatus,(Rivina_humilis,(Phytolacca_americana,(Mirabilis_jalapa,Bougainvillea_glabra))))))),(((Phaulothamnus_spinescens,((Spinacia_oleracea,Beta_vulgaris),Celosia_cristata)),Stellaria_media),Stegnosperma_halimifolium)))))),((Cornus_florida,(((Aucuba_japonica,((Jasminum_nudiflorum,(Epifagus_virginiana,Antirrhinum_majus)),((Nerium_oleander,Coffea_arabica),(((((Cuscuta_gronovii,Cuscuta_obtusiflora),(Cuscuta_exaltata,Cuscuta_reflexa)),Ipomoea_purpurea),(((Solanum_lycopersicum,(Solanum_bulbocastanum,Solanum_tuberosum)),Atropa_belladonna),(Nicotiana_tomentosiformis,(Nicotiana_tabacum,Nicotiana_sylvestris)))),Ehretia_acuminata)))),(Ilex_cornuta,((Trachelium_caeruleum,(Scaevola_aemula,((Guizotia_abyssinica,Helianthus_annuus),Lactuca_sativa))),(Lonicera_japonica,(Panax_ginseng,(Daucus_carota,Anethum_graveolens)))))),Rhododendron_simsii)),(Berberidopsis_corallina,Aextoxicon_punctatum)))),(((((Bulnesia_arborea,Krameria_lanceolata),(((((Ceanothus_prostratus,(Celtis_occidentalis,(Ficus_sp,Morus_indica))),(Cynomorium_songaricum,((Spiraea_tomentosa,Prunus_persica),Fragaria_ananassa))),((Quercus_nigra,Juglans_nigra),(Cucumis_sativus,(Coriaria_nepalensis,Anisophyllea_fallax)))),(((Polygala_cruciata,(Albizia_julibrissin,((Phaseolus_vulgaris,Glycine_max),(Lotus_corniculatus,((Medicago_truncatula,Trifolium_subterraneum),Cicer_arietinum))))),Quillaja_saponaria),Stylobasium_spathulatum)),((Oxalis_latifolia,Eucryphia_lucida),((Euonymus_americanus,Ruptiliocarpon_caracolito),(Phyllanthus_calycinus,(Ochna_mossambicensis,((Manihot_esculenta,Jatropha_curcas),(Caryocar_glabrum,(Erythrospermum_phytolaccoides,((Malesherbia_linearifolia,Passiflora_biflora),(Populus_alba,Populus_trichocarpa))))))))))),(((Ixerba_brexioides,(Staphylea_colchica,Crossosoma_californicum)),(Picramnia_pentandra,(((Mangifera_indica,Schinus_terebinthifolius),Citrus_sinensis),(Tapiscia_sinensis,((Neurada_procumbens,(Gonystylus_bancanus,(Gossypium_hirsutum,Gossypium_barbadense))),((Carica_papaya_Soltis,Carica_papaya_GB),((Aethionema_grandiflorum,Aethionema_coridifolium),(((Draba_nemorosa,Arabis_hirsuta),(Brassica_rapa,Lobularia_maritima)),(((Barbarea_verna,Nasturtium_officinale),Lepidium_virginicum),(Crucihimalaya_wallichii,(Olimarabidopsis_pumila,('Capsella bursa-pastoris',Arabidopsis_thaliana)))))))))))),(((Hypseocharis_bilobata,Pelargonium_hortorum),(Melianthus_comosus,Viviania_marifolia)),(((Myrtus_communis,Eucalyptus_globulus),Clidemia_dentata),((Lythrum_flagellare,((Oenothera_parviflora,Oenothera_argillicola),((Oenothera_elata,Oenothera_biennis),Oenothera_glazioviana))),Terminalia_catappa))))),(Peridiscus_lucidus,(((((Hamamelis_japonica,Rhodoleia_championii),Cercidiphyllum_japonicum),((Liquidambar_styraciflua_Wang,Liquidambar_styraciflua_Moore),Daphniphyllum_sp)),Paeonia_brownii),(((Pterostemon_rotundifolius,Itea_virginica),(((Heuchera_sanguinea,Heuchera_micrantha),Saxifraga_stolonifera),Ribes_americanum)),((Penthorum_chinense,Myriophyllum_spicatum),Kalanchoe_daigremontiana))))),((Vitis_vinifera,(Cissus_rotundifolia,Tetrastigma_yunnanense)),Leea_guineensis)))),(Myrothamnus_flabellifolia,Gunnera_manicata)),Trochodendron_aralioides),Buxus_microphylla),((Nelumbo_nucifera,Platanus_occidentalis),Meliosma_aff_cuneifolia)),((Ranunculus_macranthus,Megaleranthis_saniculifolia),Nandina_domestica)),((Hedyosmum_mexicanum,(Chloranthus_spicatus,Sarcandra_chloranthoides)),Ceratophyllum_demersum)),((Liriodendron_tulipifera,(Cinnamomum_camphora,Calycanthus_floridus)),((Canella_winterana,(Drimys_granadensis,Tasmannia_lanceolata)),((Saururus_cernuus,Piper_cenocladum),(Aristolochia_littoralis,Saruma_henryi))))),(((Dioscorea_elephantipes,(((Elaeis_oleifera,(((((Zea_mays,(Sorghum_bicolor,Saccharum_officinarum)),(Dendrocalamus_latiflorus,Bambusa_oldhamii)),((Oryza_sativa,Oryza_nivara),(Brachypodium_distachyon,(((Lolium_perenne,Festuca_arundinacea),Agrostis_stolonifera),(Hordeum_vulgare,Triticum_aestivum))))),Typha_latifolia),(Tradescantia_ohiensis,Musa_acuminata))),(Phalaenopsis_aphrodite,Yucca_schidigera)),Lilium_superbum)),(Vallisneria_americana,(Spathiphyllum_sp,Lemna_minor))),(Acorus_americanus,Acorus_calamus))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9216] END;