#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 20:19 GMT TreeBASE (cc) 1994-2008 Study reference: Wurdack K.J., & Davis C. 2009. Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life. American Journal of Botany, 96(8): 1551-1570. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S10659] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=190; TAXLABELS Abatia_parviflora Acalypha_californica Acharia_tragodes Acridocarpus_natalitius Afrostyrax_sp Androstachys_johnsonii Aneulophus_africanus Anthodiscus_amazonicus Aporusa_frutescens Arabidopsis_thaliana Archytaea_multiflora Atuna_racemosa Austrobuxus_megacarpus Averrhoa_carambola Balanops_vieillardi Bergia_spp Beta_vulgaris Bhesa_spp Bischofia_javanica Bonnetia_spp Brexia_madagascariensis Bruguiera_gymnorrhiza Brunellia_acutangula Byrsonima_crassifolia Calophyllum_spp Calycanthus_floridus Carallia_brachiata Carpotroche_longifolia Caryocar_glabrum Casearia_spp Cassipourea_lanceolata Celastrus_orbiculatus Celastrus_scandens Centroplacus_glaucinus Cephalotus_follicularis Cespedesia_bonplandii Chrysobalanus_icaco Clusia_spp Clutia_spp Codiaeum_variegatum Conceveiba_martiana Cratoxylum_formosum Crinodendron_hookerianum Croizatia_brevipetiolata Croton_alabamensis Ctenolophon_englerianus Cucurbitaceae_spp Cyrillopsis_paraensis Dalechampia_spathulata Dapania_racemosa Daphniphyllum_spp Denhamia_celastroides Dicella_nucifera Dichapetalum_spp Dillenia_spp Dissiliaria_muelleri Dovyalis_rhamnoides Durandea_pentagyna Elaeodendron_orientale Elatine_triandra Eliea_articulata Elvasia_calophyllea Endodesmia_calophylloides Endospermum_moluccanum Erythrospermum_phytolaccoides Erythroxylum_spp Eucryphia_spp Euonymus_alatus Euphorbia_spp Euphronia_guianensis Fabaceae_spp Fagus_grandifolia Flacourtia_jangomas Froesia_diffusa Fusispermum_laxiflorum Galearia_filiformis Goupia_glabra Guaiacum_sanctum Hevea_cf_pauciflora Heywoodia_lucens Hirtella_bicornis Homalanthus_populneus Hua_gabonii Hugonia_platysepala Humiria_spp Hura_crepitans Hybanthus_concolor Hydnocarpus_sp Hymenanthera_alpina Hypericum_spp Idesia_polycarpa Irvingia_malayana Ixonanthes_spp Kiggelaria_africana Klainedoxa_gabonensis Krameria_spp Lachnostylis_bilocularis Lacistema_aggregatum Lasiocroton_bahamensis Leea_guineensis Leonia_glycycarpa Lepidobotrys_staudtii Licania_spp Linum_spp Lophira_lanceolata Lophopyxis_maingayi Lozania_pittieri Lunania_parviflora Luxemburgia_spp Malesherbia_spp Mammea_siamensis Manihot_grahamii Marathrum_spp Maytenus_arbutifolia Maytenus_senegalensis Medusagyne_oppositifolia Medusandra_richardsiana Mesua_sp Micrantheum_hexandrum Microdesmis_spp Montrouziera_cauliflora Moultonianthus_leembruggianus Neoscortechinia_kingii Nicotiana_tabacum Ochna_multiflora Ochna_sp Ochthocosmus_longipedicellatus Omphalea_diandra Oxalis_spp Panda_oleosa Pangium_edule Paradrypetes_subintegrifolia Parnassia_spp Paropsia_madagascariensis Passiflora_spp Paxistima_canbyi Pentaphalangium_latissimum Pera_bicolor Peridiscus_lucidus Petalostigma_pubescens Phyllanthus_epiphyllanthus Pimelodendron_zoanthogyne Plagiopteron_suaveolens Ploiarium_alternifolium Podocalyx_loranthoides Podostemum_ceratophyllum Pogonophora_schomburgkiana Poliothyrsis_sinensis Populus_spp Prockia_crucis Prunus_spp Putranjiva_roxburghii Quiina_pteridophylla Rafflesia_pricei 'Rafflesia tuan-mudae' Reinwardtia_indica Rheedia_macrophylla Rhizanthes_lowii Ricinus_communis Rinorea_spp Rourea_minor Ruptiliocarpon_caracolito Sacoglottis_spp Salix_spp Sapria_himalayana Sauvagesia_spp Scyphostegia_borneensis Siphonodon_celastrineus Sloanea_spp Soyauxia_floribunda Soyauxia_talbotii Spathiostemon_javensis Stackhousia_minima Suregada_spp Tapura_guianensis Tetracoccus_dioicus Tetrorchidium_cf_macrophyllum Thryallis_latifolia Touroulia_guianensis Triadenum_walteri Tricliceras_longipedunculatum Trigonia_nivea Trigoniastrum_hypoleucum Trigonostemon_verrucosus Tripterygium_regelii Turnera_ulmifolia Vantanea_guianensis Viola_spp Vismia_spp Vitis_spp ; END; BEGIN TREES; TITLE 13_gene_TB; LINK TAXA = Taxa; TREE 'Fig. 2, 3' = [&R] (Calycanthus_floridus,(((((((((Acharia_tragodes,Kiggelaria_africana),Pangium_edule),((Carpotroche_longifolia,Erythrospermum_phytolaccoides),Hydnocarpus_sp)),(Goupia_glabra,((Lacistema_aggregatum,Lozania_pittieri),(((((Abatia_parviflora,Prockia_crucis),(Dovyalis_rhamnoides,Flacourtia_jangomas)),((Idesia_polycarpa,(Populus_spp,Salix_spp)),Poliothyrsis_sinensis)),Scyphostegia_borneensis),(Casearia_spp,Lunania_parviflora))),((Malesherbia_spp,((Paropsia_madagascariensis,Passiflora_spp),(Tricliceras_longipedunculatum,Turnera_ulmifolia))),(Fusispermum_laxiflorum,(((Hybanthus_concolor,Leonia_glycycarpa),(Hymenanthera_alpina,Viola_spp)),Rinorea_spp))))),(Balanops_vieillardi,(((Atuna_racemosa,(Chrysobalanus_icaco,(Hirtella_bicornis,Licania_spp))),Euphronia_guianensis),((Dichapetalum_spp,Tapura_guianensis),(Trigonia_nivea,Trigoniastrum_hypoleucum)))),((((Archytaea_multiflora,Ploiarium_alternifolium),Bonnetia_spp),(Clusia_spp,(Montrouziera_cauliflora,(Pentaphalangium_latissimum,Rheedia_macrophylla)))),(((Calophyllum_spp,Mammea_siamensis,Mesua_sp),Endodesmia_calophylloides),(((Cratoxylum_formosum,Eliea_articulata),((Hypericum_spp,Triadenum_walteri),Vismia_spp)),(Marathrum_spp,Podostemum_ceratophyllum)))),(Anthodiscus_amazonicus,Caryocar_glabrum),(Bhesa_spp,Centroplacus_glaucinus),(Ctenolophon_englerianus,((Aneulophus_africanus,Erythroxylum_spp),((Bruguiera_gymnorrhiza,Carallia_brachiata),(Cassipourea_lanceolata,Paradrypetes_subintegrifolia)))),((Bergia_spp,Elatine_triandra),((Acridocarpus_natalitius,(Dicella_nucifera,Thryallis_latifolia)),Byrsonima_crassifolia)),((((((((Acalypha_californica,Spathiostemon_javensis),(Dalechampia_spathulata,Lasiocroton_bahamensis),Ricinus_communis),Conceveiba_martiana),Moultonianthus_leembruggianus),((Codiaeum_variegatum,Trigonostemon_verrucosus),Croton_alabamensis),((Endospermum_moluccanum,Tetrorchidium_cf_macrophyllum),Omphalea_diandra),((Euphorbia_spp,(Homalanthus_populneus,Hura_crepitans)),Pimelodendron_zoanthogyne),(Hevea_cf_pauciflora,Manihot_grahamii),Suregada_spp),Neoscortechinia_kingii),(((Rafflesia_pricei,'Rafflesia tuan-mudae'),Rhizanthes_lowii),Sapria_himalayana)),((Clutia_spp,Pera_bicolor),Pogonophora_schomburgkiana)),((Humiria_spp,Vantanea_guianensis),Sacoglottis_spp),(Irvingia_malayana,Klainedoxa_gabonensis),((Cyrillopsis_paraensis,Ochthocosmus_longipedicellatus),Ixonanthes_spp),((Durandea_pentagyna,Hugonia_platysepala),(Linum_spp,Reinwardtia_indica)),(Lophopyxis_maingayi,Putranjiva_roxburghii),((((Cespedesia_bonplandii,Sauvagesia_spp),((Elvasia_calophyllea,(Ochna_multiflora,Ochna_sp)),Lophira_lanceolata)),Luxemburgia_spp),(Medusagyne_oppositifolia,(Froesia_diffusa,(Quiina_pteridophylla,Touroulia_guianensis)))),((Galearia_filiformis,Panda_oleosa),Microdesmis_spp),(((Aporusa_frutescens,Bischofia_javanica),(((Croizatia_brevipetiolata,Lachnostylis_bilocularis),Phyllanthus_epiphyllanthus),Heywoodia_lucens)),(((Androstachys_johnsonii,Tetracoccus_dioicus),(((Austrobuxus_megacarpus,Dissiliaria_muelleri),Micrantheum_hexandrum),Petalostigma_pubescens)),Podocalyx_loranthoides))),(((((Brunellia_acutangula,Cephalotus_follicularis),(Crinodendron_hookerianum,Sloanea_spp)),Eucryphia_spp),(Rourea_minor,((Averrhoa_carambola,Dapania_racemosa),Oxalis_spp))),(Afrostyrax_sp,Hua_gabonii))),(((((((Brexia_madagascariensis,Elaeodendron_orientale),Plagiopteron_suaveolens),(Maytenus_arbutifolia,Maytenus_senegalensis)),(((Celastrus_orbiculatus,Celastrus_scandens),Tripterygium_regelii),(Euonymus_alatus,Paxistima_canbyi))),((Denhamia_celastroides,Stackhousia_minima),Siphonodon_celastrineus)),Parnassia_spp),(Lepidobotrys_staudtii,Ruptiliocarpon_caracolito))),Arabidopsis_thaliana),((Guaiacum_sanctum,Krameria_spp),(((Cucurbitaceae_spp,Fagus_grandifolia),Fabaceae_spp),Prunus_spp))),(Leea_guineensis,Vitis_spp),Dillenia_spp,(Nicotiana_tabacum,Beta_vulgaris),((Medusandra_richardsiana,(Peridiscus_lucidus,(Soyauxia_talbotii,Soyauxia_floribunda))),Daphniphyllum_spp)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr9928] END;