#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 17:14 GMT TreeBASE (cc) 1994-2008 Study reference: Rothfels C., Windham M.D., & Pryer K. 2013. A plastid phylogeny of the cosmopolitan fern family Cystopteridaceae (Polypodiopsida). Systematic Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13449] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=84; TAXLABELS Acystopteris_japonica_7097 Acystopteris_japonica_7978 Acystopteris_taiwaniana_4870 Acystopteris_taiwaniana_6137 Acystopteris_tenuisecta_4225 Acystopteris_tenuisecta_4831 Athyrium_otophorum_ Blechnum_schomburgkii_ Cystopteris_alpina_7920 Cystopteris_bulbifera_5836 Cystopteris_bulbifera_7650 Cystopteris_diaphana_6386 Cystopteris_douglasii_6206 Cystopteris_fragilis_5316 Cystopteris_fragilis_5622 Cystopteris_fragilis_5845 Cystopteris_fragilis_5851 Cystopteris_fragilis_5950 Cystopteris_fragilis_6380 Cystopteris_fragilis_6513 Cystopteris_fragilis_6560 Cystopteris_fragilis_6592 Cystopteris_fragilis_7103 Cystopteris_fragilis_brittonii_5847 Cystopteris_fragilis_haufleri_7034 Cystopteris_laurentiana_8081 Cystopteris_membranifolia_6732 Cystopteris_millefolia_6761 Cystopteris_montana_5839 Cystopteris_montana_6969 Cystopteris_montana_7071 Cystopteris_montana_7072 Cystopteris_montana_7943 Cystopteris_moupinensis_4861 Cystopteris_moupinensis_7074 Cystopteris_pellucida_6055 Cystopteris_pellucida_6060 Cystopteris_protrusa_5838 Cystopteris_protrusa_5841 Cystopteris_protrusa_6362 Cystopteris_reevesiana_3126 Cystopteris_reevesiana_5844 Cystopteris_reevesiana_6342 Cystopteris_sandwichensis_6208 Cystopteris_sudetica_7096 Cystopteris_sudetica_7980 Cystopteris_tasmanica_6379 Cystopteris_tennesseensis_4513 Cystopteris_tennesseensis_7990 Cystopteris_tenuis_5833 Cystopteris_tenuis_6387 Cystopteris_utahensis_5832 Cystopteris_utahensis_5834 Cystopteris_utahensis_6848 Deparia_lancea_ Diplaziopsis_javanica_ Gymnocarpium_appalachianum_7639 Gymnocarpium_appalachianum_7800 Gymnocarpium_disjunctum_4710 Gymnocarpium_disjunctum_7751 Gymnocarpium_dryopteris_4601 Gymnocarpium_dryopteris_5837 Gymnocarpium_dryopteris_7059 Gymnocarpium_dryopteris_aokigaharaense_7984 Gymnocarpium_dryopteris_dryopteris_7981 Gymnocarpium_hybrid_7806 Gymnocarpium_jessoense_6059 Gymnocarpium_jessoense_7069 Gymnocarpium_jessoense_7979 Gymnocarpium_jessoense_parvulum_8053 Gymnocarpium_jessoense_parvulum_8120 Gymnocarpium_oyamense_6399 Gymnocarpium_oyamense_7983 Gymnocarpium_remotepinnatum_3066 Gymnocarpium_remotepinnatum_4862 Gymnocarpium_robertianum_5852 Gymnocarpium_robertianum_7178 Gymnocarpium_robertianum_7197 Gymnocarpium_robertianum_7945 Hemidictyum_marginatum_ Onocleopsis_hintonii_ Pseudocystopteris_atkinsonii_ Pseudophegopteris_cruciata_ Woodsia_obtusa_ ; END; BEGIN TREES; TITLE Cystopteridaceae_concat_Bootstrap_MLT_Garli; LINK TAXA = Taxa; TREE bootrep20 = [&R] (Acystopteris_japonica_7978:1.0E-8,((Acystopteris_tenuisecta_4831:1.0E-8,Acystopteris_tenuisecta_4225:1.0E-8):0.00406665,((Acystopteris_taiwaniana_4870:1.0E-8,Acystopteris_taiwaniana_6137:1.0E-8):0.00292607,(((((((Cystopteris_sudetica_7980:2.8407E-4,Cystopteris_sudetica_7096:3.3969E-4):8.5155E-4,Cystopteris_moupinensis_7074:9.1963E-4,Cystopteris_moupinensis_4861:8.4957E-4):0.00158534,(Cystopteris_pellucida_6060:1.0E-8,Cystopteris_pellucida_6055:1.0E-8):0.00633475):0.00665416,((Cystopteris_protrusa_6362:1.0E-8,(Cystopteris_protrusa_5838:1.0E-8,Cystopteris_protrusa_5841:1.0E-8):8.6104E-4):0.01031504,(((Cystopteris_reevesiana_5844:1.0E-8,((Cystopteris_reevesiana_3126:1.0E-8,Cystopteris_fragilis_5851:1.0E-8):0.00141274,((Cystopteris_fragilis_6592:0.00337423,Cystopteris_fragilis_6513:1.0E-8):0.00150422,(Cystopteris_fragilis_5622:0.00197121,Cystopteris_millefolia_6761:1.0E-8,(Cystopteris_membranifolia_6732:9.0183E-4,Cystopteris_fragilis_5316:1.0E-8,Cystopteris_diaphana_6386:2.81E-4,Cystopteris_fragilis_6380:1.0E-8,Cystopteris_fragilis_5845:9.4714E-4):5.5583E-4,Cystopteris_fragilis_6560:0.00256933):0.0011166):5.5754E-4):5.5573E-4,Cystopteris_laurentiana_8081:1.0E-8,Cystopteris_fragilis_7103:1.0E-8):5.5591E-4,Cystopteris_reevesiana_6342:1.0E-8,Cystopteris_tenuis_5833:2.8082E-4):0.00383598,((Cystopteris_alpina_7920:0.00144845,Cystopteris_tasmanica_6379:0.00142742):8.4893E-4,(((Cystopteris_fragilis_brittonii_5847:1.0E-8,Cystopteris_tenuis_6387:1.0E-8):0.00116623,(Cystopteris_fragilis_5950:0.00142549,Cystopteris_fragilis_haufleri_7034:1.0E-8):0.00221116):0.0020961,(Cystopteris_douglasii_6206:6.0798E-4,Cystopteris_sandwichensis_6208:1.0E-8):0.0034675):0.00109245):2.8232E-4):0.0068249):0.01322155):0.00234724,(Cystopteris_utahensis_5834:1.0E-8,Cystopteris_utahensis_6848:1.0E-8,Cystopteris_tennesseensis_4513:1.0E-8,Cystopteris_bulbifera_5836:5.8876E-4,Cystopteris_bulbifera_7650:1.0E-8,Cystopteris_utahensis_5832:5.7355E-4,Cystopteris_tennesseensis_7990:1.0E-8):0.00870395):0.0109829,((Cystopteris_montana_7071:1.0E-8,Cystopteris_montana_7072:1.0E-8):0.00713082,(Cystopteris_montana_6969:1.0E-8,Cystopteris_montana_7943:6.8649E-4,Cystopteris_montana_5839:1.0E-8):4.8619E-4):0.00663972):0.0164903,(((((Deparia_lancea_:0.05581969,((Pseudocystopteris_atkinsonii_:0.00526609,Athyrium_otophorum_:0.02063957):0.03824035,(Onocleopsis_hintonii_:0.06879491,Blechnum_schomburgkii_:0.07580854):0.0055069):0.00207821):0.00575167,Pseudophegopteris_cruciata_:0.06501032):0.00219396,Woodsia_obtusa_:0.08347044):0.00596151,(Diplaziopsis_javanica_:0.06104657,Hemidictyum_marginatum_:0.11222571):0.00692311):0.03403769,((Gymnocarpium_robertianum_5852:0.00390097,Gymnocarpium_robertianum_7945:1.0E-8,Gymnocarpium_jessoense_7979:1.0E-8,Gymnocarpium_robertianum_7178:1.0E-8,Gymnocarpium_robertianum_7197:1.0E-8):0.00848813,(((Gymnocarpium_oyamense_7983:1.0E-8,Gymnocarpium_oyamense_6399:1.0E-8):0.01976937,((Gymnocarpium_remotepinnatum_4862:2.8148E-4,Gymnocarpium_remotepinnatum_3066:0.00168136,(Gymnocarpium_jessoense_7069:1.0E-8,Gymnocarpium_jessoense_6059:1.0E-8):0.00115988):0.00279255,((Gymnocarpium_jessoense_parvulum_8120:1.0E-8,Gymnocarpium_jessoense_parvulum_8053:1.0E-8):0.00317159,(Gymnocarpium_appalachianum_7800:6.6939E-4,Gymnocarpium_appalachianum_7639:1.0E-8):0.00134571):0.00117036):0.00317165):3.1515E-4,(Gymnocarpium_disjunctum_4710:3.1252E-4,(Gymnocarpium_dryopteris_4601:1.0E-8,Gymnocarpium_disjunctum_7751:0.00134816,(Gymnocarpium_dryopteris_5837:1.0E-8,Gymnocarpium_dryopteris_aokigaharaense_7984:1.0E-8,Gymnocarpium_dryopteris_7059:1.0E-8,Gymnocarpium_hybrid_7806:1.0E-8):5.6077E-4,Gymnocarpium_dryopteris_dryopteris_7981:5.669E-4):0.00109099):0.00788835):0.0029344):0.04493958):0.02013413):0.01481355):0.00311038):0.00377905,Acystopteris_japonica_7097:1.0E-8); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57667] END;