#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 20:42 GMT

TreeBASE (cc) 1994-2008

Study reference:
Wilkin P., Schols P., Chase M., Chayamarit K., Furness C., Rakotonasolo F., Smets
E., & Thapyai C. 2005. A Plastid Gene Phylogeny of the Yam Genus, Dioscorea: Roots,
Fruits and Madagascar. Systematic Botany, 30(4).

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1435]

BEGIN TAXA;
        TITLE  Combined_rbcl;
        DIMENSIONS NTAX=81;
        TAXLABELS
            Burmannia_biflora
            Burmannia_longifolia
            Burmannia_madagascariensis
            Dioscorea_alata
            Dioscorea_alatipes
            Dioscorea_amaranthoides
            Dioscorea_antaly
            Dioscorea_arachidna
            Dioscorea_arcuatinervis
            Dioscorea_bemarivensis
            Dioscorea_birmanica
            Dioscorea_brachybotrya
            Dioscorea_brevipetiolata
            Dioscorea_buchananii
            Dioscorea_bulbifera
            Dioscorea_calcicola
            Dioscorea_cfadenocarpa
            Dioscorea_cfapurimacensis
            Dioscorea_cftanalarum
            Dioscorea_cftarijensis
            Dioscorea_cirrhosa
            Dioscorea_communis
            Dioscorea_convolvulacea
            Dioscorea_coriacea
            Dioscorea_daunea
            Dioscorea_decipiens
            Dioscorea_dumetorum
            Dioscorea_elephantipes
            Dioscorea_esculenta
            Dioscorea_fandra
            Dioscorea_galeottiana
            Dioscorea_gillettii
            Dioscorea_glabra
            Dioscorea_hamiltonii
            Dioscorea_hexagona
            Dioscorea_hispida
            Dioscorea_inopinata
            Dioscorea_karatana
            Dioscorea_lagoasanta
            Dioscorea_lanata
            Dioscorea_larecajensis
            Dioscorea_longirhiza
            Dioscorea_maciba
            Dioscorea_mcvaughii
            Dioscorea_membranacea
            Dioscorea_namorokensis
            Dioscorea_nipponica
            Dioscorea_oryzetorum
            Dioscorea_ovinala
            Dioscorea_pentaphylla
            Dioscorea_petelotii
            Dioscorea_piperifolia
            Dioscorea_prazeri
            Dioscorea_preussii
            Dioscorea_pseudonitens
            Dioscorea_pyrenaica
            Dioscorea_rockii
            Dioscorea_sansibarensis
            Dioscorea_schimperiana
            Dioscorea_soso
            Dioscorea_sp
            Dioscorea_spaffputisensis
            Dioscorea_spsectmonad
            Dioscorea_sylvatica
            Dioscorea_tentaculigera
            Dioscorea_trichantha
            Dioscorea_wallichii
            Dioscorea_zingiberensis
            Rajania_cordata
            Stenomeris_borneensis
            Tacca_artocarpifolia
            Tacca_chantrieri
            Tacca_integrifolia
            Tacca_leontopetaloides
            Tacca_palmata
            Tacca_palmatifida
            Tacca_plantaginea
            Tamus_edulis
            Thismia_rodwayi
            Trichopus_sempervirens
            Trichopus_zeylanicus
            ;
END;

BEGIN TREES;
      TITLE Tb7531;
      LINK TAXA = Combined_rbcl;
      TREE 'Fig, 1' = [&R] (((((((((((((((((((Dioscorea_alata,Dioscorea_glabra,Dioscorea_calcicola,(Dioscorea_wallichii,Dioscorea_inopinata,Dioscorea_oryzetorum)),Dioscorea_decipiens,(Dioscorea_hamiltonii,Dioscorea_brevipetiolata),Dioscorea_cirrhosa),Dioscorea_lanata),Dioscorea_schimperiana),(((Dioscorea_dumetorum,Dioscorea_hispida),Dioscorea_antaly),((Dioscorea_arachidna,Dioscorea_pentaphylla),Dioscorea_bulbifera))),((((Dioscorea_arcuatinervis,Dioscorea_cftanalarum),Dioscorea_bemarivensis),(((Dioscorea_ovinala,Dioscorea_soso),Dioscorea_hexagona,Dioscorea_trichantha,Dioscorea_alatipes,Dioscorea_karatana,Dioscorea_maciba,Dioscorea_namorokensis),Dioscorea_fandra)),Dioscorea_sansibarensis)),Dioscorea_esculenta),Dioscorea_petelotii),((Dioscorea_birmanica,Dioscorea_preussii),Dioscorea_daunea),Dioscorea_pseudonitens),Rajania_cordata),Dioscorea_tentaculigera),((((Dioscorea_sylvatica,Dioscorea_elephantipes),Dioscorea_gillettii),Dioscorea_buchananii),((Dioscorea_communis,Tamus_edulis),Dioscorea_pyrenaica))),((((Dioscorea_galeottiana,Dioscorea_convolvulacea),Dioscorea_coriacea),Dioscorea_sp,((Dioscorea_lagoasanta,Dioscorea_spsectmonad),Dioscorea_piperifolia)),Dioscorea_larecajensis,(Dioscorea_cfadenocarpa,Dioscorea_spaffputisensis))),((((Dioscorea_mcvaughii,Dioscorea_longirhiza),Dioscorea_cfapurimacensis),Dioscorea_brachybotrya),(Dioscorea_amaranthoides,Dioscorea_cftarijensis))),(((Dioscorea_membranacea,Dioscorea_rockii),Dioscorea_prazeri),(Dioscorea_nipponica,Dioscorea_zingiberensis))),Stenomeris_borneensis)Dioscorea,(((((Tacca_chantrieri,Tacca_integrifolia),(Tacca_palmatifida,Tacca_palmata)),Tacca_plantaginea),(Tacca_leontopetaloides,Tacca_artocarpifolia)),(Trichopus_zeylanicus,Trichopus_sempervirens)))Dioscoreaceae,(Burmannia_longifolia,Burmannia_madagascariensis),Burmannia_biflora),Thismia_rodwayi);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2301]


END;