#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 16, 2025; 12:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Fory P., Triplett L.R., Ballen C., Abello J., Duitama J., Aricapa M., Prado G., Correa
F., Hamilton J., Leach J., Tohme J., & Mosquera G. 2013. Comparative analysis
of two emerging rice seed pathogens. Phytopathology, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14408]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=37;
        TAXLABELS
            Agrobacterium_tumefaciens_C5A
            Burkholderai_pseudomallei_T6SS3
            Burkholderai_pseudomallei_T6SS5
            Burkholderai_thailandensis_T6SS5
            Burkholderia_gladioli_BSR3_YP_004348376
            Burkholderia_gladioli_BSR3_YP_004359059
            Burkholderia_gladioli_BSR3_YP_004362835
            Burkholderia_gladioli3848s_contig16
            Burkholderia_gladioli3848s_contig265
            Burkholderia_glumae_AU6208_1
            Burkholderia_glumae_AU6208_2
            Burkholderia_glumae_AU6208_3
            Burkholderia_glumae_AU6208_4
            Burkholderia_glumae_BGR1_YP_002907865
            Burkholderia_glumae_BGR1_YP_002907919
            Burkholderia_glumae_BGR1_YP_002908402
            Burkholderia_glumae_BGR1_YP_002908734
            Burkholderia_glumae_BGR1_YP_002910292
            Burkholderia_glumae_LMG2196_1_Contig156
            Burkholderia_glumae_LMG2196_2_Contig4
            Burkholderia_glumae_LMG2196_3_Contig26
            Burkholderia_glumae_LMG2196_4_Contig199
            Burkholderia_glumae32525_contig300
            Burkholderia_glumae32525_contig36
            Burkholderia_glumae32525_contig468
            Burkholderia_glumae32525_contig64
            Burkholderia_pseudomallei_T6SS1
            Burkholderia_pseudomallei_T6SS2
            Burkholderia_pseudomallei_T6SS4
            Burkholderia_pseudomallei_T6SS6
            Burkholderia_thailandensis_T6SS1
            Burkholderia_thailandensis_T6SS2
            Burkholderia_thailandensis_T6SS4
            Burkholderia_thailandensis_T6SS6
            Ralstonia_eutropha_YP_725168
            Ralstonia_eutropha_YP_841946
            Vibrio_cholerae_O1
            ;
END;

BEGIN TREES;
      TITLE Emerging_rice_seed_pathogens;
      LINK TAXA = Taxa;
      TREE Tree1 = [&R] ((((((((Burkholderia_glumae_AU6208_3:0.0,Burkholderia_glumae_LMG2196_2_Contig4:0.0)0.1960:0.0,Burkholderia_glumae32525_contig36:0.0)0.2110:0.0,Burkholderia_glumae_BGR1_YP_002907865:0.0)1.0000:0.07476887,(Burkholderia_pseudomallei_T6SS2:0.0,Burkholderia_thailandensis_T6SS2:0.0)1.0000:0.05135726)0.8920:0.04887383,(Ralstonia_eutropha_YP_725168:0.04595641,(Burkholderai_pseudomallei_T6SS3:0.0579834,Burkholderia_gladioli_BSR3_YP_004362835:0.04821129)0.8580:0.0374038)0.8740:0.04687678)0.7770:0.07183099,((Burkholderia_pseudomallei_T6SS6:-0.00664621,Burkholderia_thailandensis_T6SS6:0.03970406)1.0000:0.22455707,(Burkholderia_gladioli_BSR3_YP_004348376:0.0,Burkholderia_gladioli3848s_contig265:0.0)1.0000:0.26515674)0.4700:0.02322173)0.8790:0.19093476,(Burkholderia_pseudomallei_T6SS4:-3.9824E-4,Burkholderia_thailandensis_T6SS4:0.0166584)1.0000:0.45854514)0.9930:0.41813477,(((((Burkholderia_glumae_AU6208_2:0.0,Burkholderia_glumae_LMG2196_4_Contig199:0.0)0.2010:0.0,Burkholderia_glumae32525_contig300:0.0)0.1800:0.0,Burkholderia_glumae_BGR1_YP_002908402:0.0)1.0000:1.04758659,Ralstonia_eutropha_YP_841946:0.45241341)0.8430:0.24409516,((Burkholderia_pseudomallei_T6SS1:0.00966818,Burkholderia_thailandensis_T6SS1:0.00659198)0.8540:0.04814691,(Burkholderia_glumae_BGR1_YP_002910292:-0.00102253,(Burkholderia_glumae32525_contig64:-0.00193743,(Burkholderia_glumae_AU6208_1:-0.00368112,(Burkholderia_glumae_LMG2196_1_Contig156:-0.00701167,(Burkholderia_gladioli_BSR3_YP_004359059:0.00509382,Burkholderia_gladioli3848s_contig16:0.0029707)0.8230:0.02340457)0.1850:0.00368112)0.1010:0.00193743)0.1570:0.00102253)0.8840:0.06825835)0.9980:0.36187448)0.4740:0.07181233,(Agrobacterium_tumefaciens_C5A:0.23870194,(((Burkholderai_pseudomallei_T6SS5:0.09852436,Burkholderai_thailandensis_T6SS5:0.05888305)0.9640:0.32127819,Vibrio_cholerae_O1:0.4119929)0.9960:0.58579135,(Burkholderia_glumae_BGR1_YP_002907919:0.00403226,(Burkholderia_glumae_BGR1_YP_002908734:0.0,(Burkholderia_glumae32525_contig468:0.0,(Burkholderia_glumae_AU6208_4:0.0,Burkholderia_glumae_LMG2196_3_Contig26:0.0)0.2150:0.0)0.1360:0.0)0.6740:0.00403226)1.0000:0.56006869)0.9920:0.53676815)0.7350:0.1961246);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64542]


END;