#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 22:10 GMT TreeBASE (cc) 1994-2008 Study reference: Van velzen R., Wahlert G.A., Sosef M., Onstein R.E., & Bakker F. 2015. Phylogenetics of Rinorea (Violaceae); Elucidating Infrageneric Relationships Using Plastid and Nuclear DNA Sequences. Systematic Botany, 40(1): 174-184. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15179] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=71; TAXLABELS Rinorea_albidiflora_RV80 Rinorea_amietii_ined._RV50 Rinorea_amietii_ined._RV87 Rinorea_angustifolia_subsp._ardisiiflora_QL12745 Rinorea_angustifolia_subsp._engleriana_GA2117 Rinorea_angustifolia_subsp._engleriana_RO41 Rinorea_arborea_JB10171 Rinorea_bahiensis_JPS5679 Rinorea_ballardii_ined._GW113 Rinorea_batesii_RV54 Rinorea_beniensis_ATBP610 Rinorea_brachypetala_CJ6729 Rinorea_brachypetala_EK165 Rinorea_brachypetala_MS2592 Rinorea_brachypetala_RV100 Rinorea_breviracemosa_GA2208 Rinorea_bullata_CS217 Rinorea_campoensis_JW4640 Rinorea_cf._ebolowensis_TA3620 Rinorea_cf._exappendiculata_JW4382 Rinorea_chevalieri_TS2859 Rinorea_claessensii_RO31 Rinorea_convallarioides_subsp._convallarioides_JB9908 Rinorea_convallarioides_subsp._occidentalis_RO42 Rinorea_crenata_HB94 Rinorea_dentata_LC578 Rinorea_dewildei_ined._RV43 Rinorea_dimakoensis_ined._BS2591 Rinorea_dimakoensis_ined._GA2167 Rinorea_elliptica_JB10128 Rinorea_gabunensis_GA2118 Rinorea_gabunensis_JW4451 'Rinorea greveana JB07-08' Rinorea_guianensis_JPS9541 Rinorea_ilicifolia_JW5388 Rinorea_ilicifolia_RO29 Rinorea_jaundensis_DH2964 Rinorea_jaundensis_RV55 Rinorea_kamerunensis_GA2111 Rinorea_kamerunensis_LC567 Rinorea_kemoensis_BS2664 Rinorea_ledermannii_TA3364 Rinorea_leiophylla_GA2115 Rinorea_leiophylla_RV48 Rinorea_lepidobotrys_RV23 Rinorea_longicuspis_GA2112 Rinorea_longicuspis_RV21 Rinorea_longisepala_RV39 Rinorea_mezilii_GA2119 Rinorea_oblongifolia_FB13 Rinorea_oblongifolia_RO12 Rinorea_ovata_GA2122 Rinorea_preussii_RV15 Rinorea_pugionifera_GW21 Rinorea_rubrotincta_RV121 Rinorea_rubrotincta_RV58 Rinorea_simoneae_GA2110 Rinorea_sinuata_GA2178 Rinorea_sp._nov_near_angustifolia_engleriana_QL13003 Rinorea_squamosa_GW95 Rinorea_subintegrifolia_RV134 Rinorea_subintegrifolia_RV30 Rinorea_umbricola_RV83 Rinorea_verrucosa_JW4474 Rinorea_villiersii_ined._GA2174 Rinorea_welwitschii_CJ10522 Rinorea_welwitschii_QL12962 Rinorea_welwitschii_RV122 Rinorea_welwitschii_RV94 Rinorea_woermanniana_JW5172 Rinorea_zenkeri_RV59 ; END; BEGIN TREES; TITLE Concatenated_D_ML; LINK TAXA = Taxa; TREE Concatenated_D_ML = [&R] (((Rinorea_bahiensis_JPS5679:0.005723576661426233,Rinorea_guianensis_JPS9541:0.012198986250550757)100:0.02926523029801919,((((((((Rinorea_dimakoensis_ined._BS2591:0.004842244669583426,(Rinorea_dimakoensis_ined._GA2167:0.0024935843385522293,Rinorea_mezilii_GA2119:0.005038693440742316)68:8.701822608050508E-4)68:9.410795101107848E-4,Rinorea_simoneae_GA2110:0.005465154611309836)35:5.236061986526536E-4,(Rinorea_ilicifolia_JW5388:0.005649302696474114,Rinorea_ilicifolia_RO29:0.003973736106919376)42:0.0010665128850280718)100:0.019579120238779276,((Rinorea_squamosa_GW95:0.006235941942547104,(Rinorea_lepidobotrys_RV23:0.005660527276029739,Rinorea_breviracemosa_GA2208:0.009276772886800125)80:0.0010699594230454065)100:0.007842506056117455,((Rinorea_preussii_RV15:0.008322922842983253,(Rinorea_brachypetala_CJ6729:0.0074448068087700535,Rinorea_claessensii_RO31:0.004469800721640361)47:5.798436498723623E-4)40:0.002015123206483991,((Rinorea_welwitschii_CJ10522:0.004759280191115429,((Rinorea_longicuspis_GA2112:0.002565619706248113,Rinorea_welwitschii_QL12962:0.0048618685411039)71:4.2980069462809255E-4,(Rinorea_longicuspis_RV21:8.401961228970495E-4,(Rinorea_welwitschii_RV122:8.595902784555599E-4,Rinorea_welwitschii_RV94:0.001684658946566484)54:4.192779817560605E-4)89:0.0020642451855292327)72:0.0017002412935329934)98:0.004324244340609291,((Rinorea_rubrotincta_RV121:0.00708745445433957,(Rinorea_rubrotincta_RV58:0.0015439111432638474,((Rinorea_brachypetala_RV100:1.69127669677547E-6,Rinorea_brachypetala_EK165:4.1986302896977447E-4)100:0.0039042036165709633,Rinorea_batesii_RV54:9.462539252846728E-4)95:0.003890604788836696)93:0.004955497628368937)43:6.517062404321582E-4,((Rinorea_brachypetala_MS2592:0.0037980320094677875,(((Rinorea_kamerunensis_GA2111:4.352795860522815E-4,Rinorea_kamerunensis_LC567:0.001361774719059251)100:0.0020288641273323435,(Rinorea_leiophylla_RV48:0.002708204965466095,Rinorea_leiophylla_GA2115:0.0014142176133357975)100:0.0029279624665617863)80:0.001315364750829968,(Rinorea_gabunensis_GA2118:0.004750150617942952,(Rinorea_ovata_GA2122:0.006142348184078966,Rinorea_gabunensis_JW4451:0.002615865614477529)71:0.0037310994762707584)67:1.69127669677547E-6)59:0.0013129106597970616)26:8.906912896269985E-4,Rinorea_kemoensis_BS2664:0.003490691173562192)21:9.134132179871863E-4)34:0.002069408512956086)30:0.0014881659394336104)100:0.016945543740967656)37:6.750517212918718E-4)64:0.002364539872653181,((Rinorea_oblongifolia_FB13:0.013715095504434125,((Rinorea_sinuata_GA2178:0.025995609153804496,Rinorea_oblongifolia_RO12:0.010675829038751522)46:0.0032572248533678533,((((Rinorea_ledermannii_TA3364:0.004969620151650625,Rinorea_villiersii_ined._GA2174:0.005226878516178862)59:0.0027959221483564623,(Rinorea_longisepala_RV39:0.009703927153922785,(Rinorea_amietii_ined._RV50:1.69127669677547E-6,Rinorea_amietii_ined._RV87:0.0012035039959928035)95:0.003775227890831435)46:0.002153517270444698)67:0.0011549514370365636,Rinorea_umbricola_RV83:0.005968984071053708)100:0.013047941614077447,(Rinorea_dewildei_ined._RV43:0.00679788329054883,Rinorea_verrucosa_JW4474:0.01728867231403653)87:0.0034739339800673283)74:8.93654489850028E-4)67:0.003500542527171169)85:0.005717311060212771,(Rinorea_campoensis_JW4640:0.003331049724735844,(Rinorea_subintegrifolia_RV134:9.779287913548253E-4,Rinorea_subintegrifolia_RV30:0.0014360861657902943)100:0.006530465525468763)100:0.012007542580520733)35:0.001939216572451285)54:0.0030118565514651897,((((Rinorea_jaundensis_DH2964:0.0028238806256011906,Rinorea_jaundensis_RV55:0.001504503503075997)99:0.00549441284007165,Rinorea_zenkeri_RV59:0.008397275693705464)63:0.0029185541721397346,Rinorea_dentata_LC578:0.010257810800055162)100:0.016343732396632185,(((Rinorea_ballardii_ined._GW113:0.0043797575418206385,Rinorea_arborea_JB10171:0.012719843728243767)100:0.01660281659221634,(((Rinorea_beniensis_ATBP610:0.00298113221006089,(Rinorea_convallarioides_subsp._occidentalis_RO42:4.6074173304178176E-4,Rinorea_cf._ebolowensis_TA3620:0.0014774487616003053)100:0.011023806652443464)100:0.0031231256902413194,Rinorea_convallarioides_subsp._convallarioides_JB9908:0.021504766518074498)100:0.01254250292560131,(('Rinorea greveana JB07-08':0.0033285884123098256,(Rinorea_pugionifera_GW21:0.006783547962416092,Rinorea_elliptica_JB10128:0.006222337636134283)80:0.0014624506422181924)100:0.012097606562134775,Rinorea_albidiflora_RV80:0.01329390384329756)100:0.009073629221403184)63:7.050021594941497E-4)82:0.004019919470597272,(Rinorea_angustifolia_subsp._ardisiiflora_QL12745:0.026725990863070655,((Rinorea_angustifolia_subsp._engleriana_RO41:0.0038205350859732003,Rinorea_chevalieri_TS2859:0.002365984402470344)93:0.002098276567012561,(Rinorea_angustifolia_subsp._engleriana_GA2117:0.005754339943688135,Rinorea_sp._nov_near_angustifolia_engleriana_QL13003:0.018963030575251717)48:6.851870049328578E-4)100:0.008779596266605662)99:0.004663717416856727)87:0.004858544770884387)40:0.0014428940222789056)81:0.004383210188093022,(Rinorea_woermanniana_JW5172:1.69127669677547E-6,Rinorea_cf._exappendiculata_JW4382:0.003981846291446586)100:0.01556460703715678)61:0.005523787627661173,Rinorea_bullata_CS217:0.10105092949515168)100:0.01597217572339944):0.45,Rinorea_crenata_HB94:0.45); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr69550] END;