#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:51 GMT

TreeBASE (cc) 1994-2008

Study reference:
Schwartz T., Nylinder S., Ramadugu C., Antonelli A., & Pfeil B. 2014. The origin
of oranges: a multi-locus phylogeny of Rutaceae subfamily Aurantioideae. Systematic
Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16378]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=49;
        TAXLABELS
            Aegle_marmelos_1
            Aeglopsis_chevalieri_2
            Afraegle_paniculata_67
            Atalantia_buxifolia_3
            Atalantia_ceylonica_4
            Atalantia_citroides_5
            Atalantia_monophylla_6
            Balsamocitrus_dawei_7
            Bergera_koenigii_8
            Burkillanthus_malaccensis_10
            Choisya_ternata_62
            Citropsis_daweana_11
            Citropsis_schweinfurthii_12
            Citrus_gracilis_18
            Citrus_maxima_23
            Citrus_medica_26
            Citrus_reticulata_34
            Citrus_sp_Amboin_New_Guinea_13
            Citrus_xaurantium_71
            Clausena_excavata_40
            Clausena_harmandiana_41
            Clymenia_polyandra_28
            Eremocitrus_glauca_17
            Feronia_limonia_68
            Feroniella_oblata_42
            Flindersia_australis_63
            Glycosmis_mauritiana_43
            Glycosmis_pentaphylla_44
            Glycosmis_trichanthera_45
            Merrillia_caloxylon_46
            Microcitrus_australasica_16
            Microcitrus_australis_69
            Microcitrus_inodora_19
            Microcitrus_papuana_39
            Micromelum_minutum_47
            Monanthocitrus_cornuta_48
            Murraya_paniculata_51
            Naringi_crenulata_52
            Oxanthera_neocaledonica_27
            Oxanthera_sp_35
            Pamburus_missionis_54
            Paramignya_lobata_55
            Paramignya_scandens_56
            Pleisopermium_latialatum_57
            Poncirus_trifoliata_38
            Ruta_graveolens_65
            Swinglea_glutinosa_59
            Triphasia_trifolia_60
            Wenzelia_dolichophylla_61
            ;
END;

BEGIN TREES;
      TITLE Aurantioideae_chloroplast_result;
      LINK TAXA = Taxa;
      TREE Chloroplast_tree = [&R] (Ruta_graveolens_65:0.0501255,((Choisya_ternata_62:0.018248000000000007,Flindersia_australis_63:0.023741000000000005):0.014516999999999988,(((Bergera_koenigii_8:0.027576000000000003,(Clausena_excavata_40:0.014319000000000005,Clausena_harmandiana_41:0.008907000000000005):0.002779999999999991):0.001466000000000009,(Micromelum_minutum_47:0.01488600000000001,(Glycosmis_trichanthera_45:0.010413999999999986,(Glycosmis_pentaphylla_44:0.009003999999999998,Glycosmis_mauritiana_43:0.007931999999999995):0.005197):0.007340000000000013):0.0015140000000000015):3.819999999999796E-4,((Merrillia_caloxylon_46:0.004311999999999996,Murraya_paniculata_51:0.008316999999999998):0.003587000000000007,((Triphasia_trifolia_60:0.00850200000000001,(Monanthocitrus_cornuta_48:0.0025190000000000073,Wenzelia_dolichophylla_61:0.0031920000000000004):0.002486000000000002):5.280000000000007E-4,(((Paramignya_lobata_55:0.005302999999999988,Paramignya_scandens_56:0.005602999999999983):0.0039020000000000166,(Aeglopsis_chevalieri_2:0.004091499999999998,(Aegle_marmelos_1:0.008373999999999993,(Balsamocitrus_dawei_7:0.0021739999999999954,Afraegle_paniculata_67:0.004279999999999992):0.003706000000000001):0.001756500000000008):0.004831499999999989):0.0010005000000000014,(Pamburus_missionis_54:0.007556000000000007,(((Swinglea_glutinosa_59:0.004855999999999999,(Pleisopermium_latialatum_57:0.005978999999999984,Burkillanthus_malaccensis_10:0.005152999999999991):5.249999999999977E-4):6.82000000000002E-4,(Naringi_crenulata_52:0.013089999999999997,(Citropsis_schweinfurthii_12:0.00552699999999999,Citropsis_daweana_11:0.005917999999999993):0.0022040000000000115):0.005469999999999989):4.240000000000216E-4,((Feronia_limonia_68:0.014306000000000006,((Atalantia_citroides_5:0.0013010000000000105,Atalantia_monophylla_6:0.0045580000000000065):0.012048000000000003,(Atalantia_buxifolia_3:0.009979500000000002,Atalantia_ceylonica_4:0.013156499999999995):5.605000000000054E-4):0.0010929999999999968):9.16000000000014E-4,(Poncirus_trifoliata_38:0.006023000000000028,((Citrus_sp_Amboin_New_Guinea_13:0.0024169999999999886,(Citrus_xaurantium_71:9.169999999999873E-4,Citrus_maxima_23:4.989999999999856E-4):0.001240000000000005):0.0015280000000000016,((Citrus_reticulata_34:0.0013639999999999902,Feroniella_oblata_42:0.003463999999999995):0.0016315000000000218,(Citrus_medica_26:0.004171000000000008,(Clymenia_polyandra_28:0.0067354999999999846,((Oxanthera_neocaledonica_27:0.002239000000000005,Oxanthera_sp_35:0.002701000000000002):0.00225199999999999,(Microcitrus_australasica_16:0.004015000000000005,(Microcitrus_inodora_19:0.0022910000000000083,((Eremocitrus_glauca_17:0.005720999999999997,Microcitrus_australis_69:0.003362000000000004):8.440000000000114E-4,(Microcitrus_papuana_39:0.002751500000000004,Citrus_gracilis_18:0.0054085000000000105):4.785000000000067E-4):1.9999999999992246E-5):5.209999999999937E-4):0.001232999999999998):9.634999999999921E-4):3.615000000000146E-4):0.001084500000000016):4.7949999999997994E-4):5.050000000000193E-4):0.005462999999999996):7.189999999999974E-4):9.569999999999856E-4):6.685000000000024E-4):6.294999999999912E-4):0.0015370000000000106):0.0014240000000000086):0.01828499999999999):0.0041255);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77659]


END;