#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Schwartz T., Nylinder S., Ramadugu C., Antonelli A., & Pfeil B. 2014. The origin
of oranges: a multi-locus phylogeny of Rutaceae subfamily Aurantioideae. Systematic
Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16378]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=67;
        TAXLABELS
            Aegle_marmelos_1
            Aeglopsis_chevalieri_2
            Afraegle_paniculata_67
            Atalantia_buxifolia_3
            Atalantia_ceylanica_4
            Atalantia_citroides_5
            Atalantia_monophylla_6
            Balsamocitrus_dawei_7
            Bergera_koenigii_8
            Bergera_koenigii_9
            Burkillanthus_malaccensis_10
            Choisya_ternata_62
            Citropsis_daweana_11
            Citropsis_schweinfurthii_12
            Citrus_gracilis_18
            Citrus_maxima_20
            Citrus_maxima_21
            Citrus_maxima_22
            Citrus_medica_24
            Citrus_medica_25
            Citrus_reticulata_29a
            Citrus_reticulata_29b
            Citrus_reticulata_30
            Citrus_reticulata_31
            Citrus_reticulata_32a
            Citrus_reticulata_32b
            Citrus_reticulata_33a
            Citrus_reticulata_33b
            'Citrus sp. Amboin, New Guinea 13a'
            'Citrus sp. Amboin, New Guinea 13b'
            Citrus_xaurantium_66c
            Citrus_xaurantium_66d
            Clausena_excavata_40
            Clausena_harmandiana_41
            Clymenia_polyandra_28
            Eremocitrus_glauca_17
            Feronia_limonia_68
            Feroniella_oblata_42
            Flindersia_australis_63
            Glycosmis_mauritiana_43a
            Glycosmis_mauritiana_43b
            Glycosmis_pentaphylla_44
            Glycosmis_trichanthera_45
            Merrillia_caloxylon_46
            Microcitrus_australasica_14a
            Microcitrus_australasica_14b
            Microcitrus_papuana_39
            Micromelum_minutum_47
            Monanthocitrus_cornuta_48
            Murraya_paniculata_49
            Murraya_paniculata_50
            Murraya_paniculata_51
            Naringi_crenulata_52
            Oxanthera_neocaledonica_27
            Oxanthera_sp._35
            Pamburus_missionis_53
            Paramignya_lobata_55
            Paramignya_scandens_56
            Pleiospermium_latialatum_57
            Poncirus_trifoliata_36a
            Poncirus_trifoliata_36b
            Poncirus_trifoliata_37a
            Poncirus_trifoliata_37b
            Ruta_graveolens_64
            Swinglea_glutinosa_58
            Triphasia_trifolia_60
            Wenzelia_dolichophylla_61
            ;
END;

BEGIN TREES;
      TITLE Aurantioideae_MDH_result;
      LINK TAXA = Taxa;
      TREE MDH_tree = [&R] (Ruta_graveolens_64:0.115809,((Choisya_ternata_62:0.045989,Flindersia_australis_63:0.086975):0.007875,((Clausena_excavata_40:0.015904,Clausena_harmandiana_41:0.016672):0.022906,(Micromelum_minutum_47:0.037841,(Bergera_koenigii_8:0.003256,Bergera_koenigii_9:0.010467):0.029219):0.007289,(Glycosmis_trichanthera_45:0.025966,(Glycosmis_pentaphylla_44:0.011214,(Glycosmis_mauritiana_43a:0.002023,Glycosmis_mauritiana_43b:0.0011):0.00612):0.01813):0.009381,((Merrillia_caloxylon_46:0.018482,(Murraya_paniculata_51:0.003374,(Murraya_paniculata_50:0.009786,Murraya_paniculata_49:0.006662):0.002122):0.009634):0.011841,((Pamburus_missionis_53:0.024133,(Paramignya_lobata_55:0.009893,Paramignya_scandens_56:0.005414):0.01243):0.002988,((Triphasia_trifolia_60:0.023201,(Wenzelia_dolichophylla_61:0.00389,Monanthocitrus_cornuta_48:0.00693):0.015112):0.006099,((Aegle_marmelos_1:0.004442,Balsamocitrus_dawei_7:0.002187):0.010709,(Aeglopsis_chevalieri_2:0.00504,Afraegle_paniculata_67:0.003576):0.023221):0.028345,((Pleiospermium_latialatum_57:0.022642,(Swinglea_glutinosa_58:0.021126,(Burkillanthus_malaccensis_10:0.030563,Feronia_limonia_68:0.027716):0.002467):0.004563):0.002121,(((Naringi_crenulata_52:0.020615,(Citropsis_daweana_11:0.010775,Citropsis_schweinfurthii_12:0.012726):0.010558):0.005474,(Atalantia_buxifolia_3:0.016573,(Atalantia_ceylanica_4:0.014154,(Atalantia_citroides_5:0.001087,Atalantia_monophylla_6:0.002158):0.014192):0.008581):0.004955):0.004318,(Eremocitrus_glauca_17:0.005369,Citrus_gracilis_18:0.006221,Microcitrus_australasica_14a:0.001064,Microcitrus_australasica_14b:0.002128,Microcitrus_papuana_39:0.004234,Oxanthera_neocaledonica_27:0.01173,(Citrus_medica_24:0.001153,Citrus_medica_25:0.00207):0.006429,(Citrus_maxima_20:0.00101,Citrus_maxima_21:0.001033,Citrus_maxima_22:0.002149):0.003155,(Oxanthera_sp._35:0.006501,(Clymenia_polyandra_28:0.008824,'Citrus sp. Amboin, New Guinea 13a':0.007511):0.002248):0.004297,(Poncirus_trifoliata_36a:0.001147,Poncirus_trifoliata_37b:0.001145,(Poncirus_trifoliata_36b:0.00114,Poncirus_trifoliata_37a:0.001151):0.002161):0.00731,('Citrus sp. Amboin, New Guinea 13b':0.001088,(Citrus_reticulata_29a:0.0011,(Citrus_reticulata_29b:0.001081,Citrus_reticulata_31:0.001101,Citrus_reticulata_32a:0.003199,Citrus_reticulata_32b:0.001077,Citrus_reticulata_33b:0.001058,Citrus_xaurantium_66c:0.001066,(Citrus_reticulata_30:0.001053,Citrus_reticulata_33a:0.001005,Citrus_xaurantium_66d:0.001059,Feroniella_oblata_42:0.001079):0.002041):0.002074):0.004895):0.002118):0.010703):0.00293):0.002186):0.002779):0.006635):0.011313):0.034078):0.005809);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77660]


END;