#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:55 GMT

TreeBASE (cc) 1994-2008

Study reference:
Schwartz T., Nylinder S., Ramadugu C., Antonelli A., & Pfeil B. 2014. The origin
of oranges: a multi-locus phylogeny of Rutaceae subfamily Aurantioideae. Systematic
Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16378]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=62;
        TAXLABELS
            Aegle_marmelos_1a
            Aegle_marmelos_1b
            Aeglopsis_chevalieri_2a
            Aeglopsis_chevalieri_2b
            Afraegle_paniculata_67
            Atalantia_ceylanica_4a
            Atalantia_ceylanica_4b
            Atalantia_monophylla_6a
            Atalantia_monophylla_6b
            Balsamocitrus_dawei_7a
            Balsamocitrus_dawei_7b
            Bergera_koenigii_8a
            Bergera_koenigii_8b
            Citrus_gracilis_18a
            Citrus_gracilis_18b
            Citrus_maxima_20
            Citrus_maxima_21a
            Citrus_maxima_21b
            Citrus_maxima_22a
            Citrus_maxima_22b
            Citrus_medica_24
            Citrus_medica_25a
            Citrus_medica_25b
            Citrus_reticulata_29c
            Citrus_reticulata_29d
            Citrus_reticulata_30a
            Citrus_reticulata_30b
            Citrus_reticulata_31c
            Citrus_reticulata_31d
            Citrus_reticulata_32c
            Citrus_reticulata_32d
            Citrus_reticulata_33c
            Citrus_reticulata_33d
            Citrus_xaurantium_66a
            Citrus_xaurantium_66b
            Clausena_hamandiana_41a
            Clausena_hamandiana_41b
            Eremocitrus_glauca_17
            Merrilia_caloxylon_46a
            Merrilia_caloxylon_46b
            Microcitrus_australasica_14c
            Microcitrus_australasica_14d
            Microcitrus_australasica_15
            Microcitrus_inodura_19
            Monanthocitrus_cornuta_48a
            Monanthocitrus_cornuta_48b
            Murraya_paniculata_49a
            Murraya_paniculata_49b
            Murraya_paniculata_50
            Naringi_crenulata_52a
            Naringi_crenulata_52b
            Oxanthera_neocaledonica_27
            Pamburus_missionis_53a
            Pamburus_missionis_53b
            Paramignya_lobata_55a
            Paramignya_lobata_55b
            Poncirus_trifoliata_36c
            Poncirus_trifoliata_36d
            Poncirus_trifoliata_37c
            Poncirus_trifoliata_37d
            Swinglea_glutinosa_58a
            Swinglea_glutinosa_58b
            ;
END;

BEGIN TREES;
      TITLE Aurantioideae_HYB_alignment;
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] ((Clausena_hamandiana_41a:0.006419,Clausena_hamandiana_41b:0.001053):0.0242565,((Bergera_koenigii_8a:0.010128,Bergera_koenigii_8b:0.016498):0.044932,((((Merrilia_caloxylon_46a:0.006998,Merrilia_caloxylon_46b:0.002614):0.036649,(Murraya_paniculata_49a:0.004119,(Murraya_paniculata_49b:0.00451,Murraya_paniculata_50:0.008232):0.003793):0.011756):0.040687,(((Pamburus_missionis_53a:0.002952,Pamburus_missionis_53b:7.33E-4):0.031946,(Paramignya_lobata_55a:0.005659,Paramignya_lobata_55b:0.011414):0.026904):0.017639,((Afraegle_paniculata_67:0.00773,(Aeglopsis_chevalieri_2a:0.0035,Aeglopsis_chevalieri_2b:0.006454):0.01264):0.002734,(Balsamocitrus_dawei_7b:0.007824,(Balsamocitrus_dawei_7a:9.66E-4,(Aegle_marmelos_1a:7.34E-4,Aegle_marmelos_1b:7.32E-4):0.002937):0.017157):0.007542):0.06485):0.008057):0.003827,((Monanthocitrus_cornuta_48a:7.14E-4,Monanthocitrus_cornuta_48b:0.004785):0.053082,((Swinglea_glutinosa_58a:8.2E-4,Swinglea_glutinosa_58b:0.002992):0.041316,((Naringi_crenulata_52a:0.001653,Naringi_crenulata_52b:0.003131):0.048087,(((Atalantia_ceylanica_4a:0.001256,Atalantia_ceylanica_4b:0.001033):0.020399,(Atalantia_monophylla_6a:0.005103,Atalantia_monophylla_6b:6.83E-4):0.029068):0.013253,((Poncirus_trifoliata_37c:0.006223,(Poncirus_trifoliata_36c:0.002775,Poncirus_trifoliata_36d:7.51E-4,Poncirus_trifoliata_37d:7.37E-4):0.002147):0.023489,((Oxanthera_neocaledonica_27:0.004951,(Eremocitrus_glauca_17:0.015174,(Citrus_gracilis_18a:7.54E-4,Citrus_gracilis_18b:7.19E-4):0.014747,(Microcitrus_australasica_14d:0.006077,Microcitrus_inodura_19:0.006681,(Microcitrus_australasica_14c:0.005099,Microcitrus_australasica_15:0.011877):0.005125):0.006272):0.00464):0.006654,((Citrus_maxima_22b:0.001832,(Citrus_maxima_22a:0.002852,(Citrus_maxima_21b:9.68E-4,(Citrus_maxima_20:0.003159,Citrus_maxima_21a:0.001633):0.003239):0.002626):0.002919):0.002832,((Citrus_medica_24:0.008514,(Citrus_medica_25a:7.59E-4,Citrus_medica_25b:0.003869):0.0033):0.012278,(Citrus_reticulata_30b:8.0E-4,Citrus_reticulata_31c:7.77E-4,Citrus_reticulata_31d:0.001627,Citrus_reticulata_32c:0.001768,Citrus_reticulata_33d:0.001503,Citrus_xaurantium_66a:7.89E-4,Citrus_xaurantium_66b:0.001274,(Citrus_reticulata_30a:0.001982,Citrus_reticulata_33c:0.001915):0.001827,(Citrus_reticulata_29d:9.83E-4,(Citrus_reticulata_29c:9.1E-4,Citrus_reticulata_32d:0.001064):0.001972):0.002078):0.006888):0.004776):0.006131):0.006047):0.006523):0.003469):0.004951):0.029654):0.0102):0.016806):0.0242565);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr78027]


END;