#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 22:09 GMT

TreeBASE (cc) 1994-2008

Study reference:
Alexander P.J., Windham M.D., Beck J., Al-shehbaz I.A., Allphin L., & Bailey C.D.
2014. Weaving a Tangled Web: Divergent and Reticulate Speciation in Boechera fendleri
sensu lato (Brassicaceae: Boechereae). Systematic Botany, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16561]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=34;
        TAXLABELS
            Boechera_fendleri_226b
            Boechera_fendleri_229a
            Boechera_gracilipes_174
            Boechera_gracilipes_347a
            Boechera_nevadensis_013a
            Boechera_pendulina_168
            Boechera_perennans_016
            Boechera_perennans_133
            Boechera_porphyrea_154a_P1
            Boechera_porphyrea_154a_P11
            Boechera_porphyrea_154a_P15
            Boechera_porphyrea_154a_P16
            Boechera_porphyrea_154a_P17
            Boechera_porphyrea_154a_P2
            Boechera_porphyrea_154a_P4
            Boechera_porphyrea_154a_P5
            Boechera_porphyrea_154a_P7
            Boechera_porphyrea_154a_P8
            Boechera_porphyrea_154a_P9
            Boechera_porphyrea_154a_PC1_230d_PC2
            Boechera_porphyrea_230d_P13
            Boechera_porphyrea_230d_P5
            Boechera_porphyrea_230d_P6
            Boechera_porphyrea_230d_P7
            Boechera_porphyrea_230d_PC1
            Boechera_porphyrea_230d_PC3
            Boechera_porphyrea_230d_PC4
            Boechera_spatifolia_124a
            Boechera_spatifolia_322a
            Boechera_stricta_025a
            Boechera_stricta_400a
            Boechera_texana_150d
            Boechera_williamsii_367a
            Boechera_wyomingensis_015
            ;
END;

BEGIN TREES;
      TITLE 'Boechera porphyrea, maximum likelihood bootstrap from RAxML';
      LINK TAXA = Taxa;
      TREE Imported_tree_8 = [&R] (((Boechera_spatifolia_322a:6.883870152975845E-4,Boechera_spatifolia_124a:2.512190105059932E-4):0.00246639352018786,((Boechera_porphyrea_230d_P6:0.00232559831967644,(Boechera_texana_150d:0.0016894005001108177,((Boechera_porphyrea_230d_P13:8.6549687055842E-7,(Boechera_porphyrea_154a_P15:8.6549687055842E-7,(Boechera_porphyrea_154a_P8:8.6549687055842E-7,Boechera_porphyrea_230d_PC4:8.6549687055842E-7):8.6549687055842E-7):8.6549687055842E-7):8.6549687055842E-7,(Boechera_porphyrea_154a_P2:7.659454974739822E-4,Boechera_porphyrea_154a_P4:0.0015487586584997913):8.6549687055842E-7):7.766038757073178E-4):0.003275650860813568):0.0015221628932598852,(Boechera_pendulina_168:0.0031080896418731988,(((((((Boechera_perennans_133:8.372699729489704E-4,(Boechera_porphyrea_230d_P5:0.0015429465125052161,Boechera_perennans_016:0.0020687620778840326):8.6549687055842E-7):8.6549687055842E-7,Boechera_porphyrea_230d_P7:7.702414136015894E-4):8.6549687055842E-7,Boechera_porphyrea_154a_PC1_230d_PC2:8.6549687055842E-7):8.6549687055842E-7,Boechera_porphyrea_154a_P11:0.0015570923897187513):8.6549687055842E-7,Boechera_porphyrea_154a_P16:7.661109316568902E-4):0.002683770096076778,Boechera_wyomingensis_015:0.001130595237690222):8.6549687055842E-7,(Boechera_nevadensis_013a:4.220018508037382E-4,((Boechera_fendleri_226b:8.6549687055842E-7,Boechera_fendleri_229a:6.126490267774228E-4):0.003710126172931639,((Boechera_porphyrea_154a_P17:8.6549687055842E-7,(((Boechera_porphyrea_154a_P9:7.573491518802487E-4,Boechera_porphyrea_154a_P7:7.733960663870703E-4):7.74956898323973E-4,(Boechera_porphyrea_230d_PC3:8.6549687055842E-7,(Boechera_porphyrea_154a_P5:0.0015337114016062703,Boechera_porphyrea_230d_PC1:8.34341928991085E-4):8.6549687055842E-7):8.6549687055842E-7):8.6549687055842E-7,Boechera_porphyrea_154a_P1:0.0015238393416392637):7.678683768812485E-4):7.851719957301223E-4,(Boechera_gracilipes_347a:2.0248456489593356E-4,Boechera_gracilipes_174:6.231245084841131E-4):0.003538857642013037):8.6549687055842E-7):4.092871449788756E-4):8.6549687055842E-7):8.6549687055842E-7):0.0014357459931258266):1.9251775327518096E-4):8.025127117311289E-4,(Boechera_williamsii_367a:0.002290138363231134,(Boechera_stricta_400a:0.0018810499469348928,Boechera_stricta_025a:2.0479919820329365E-4):0.0029739045480540274):8.025127117311289E-4);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr79139]


END;