#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 18, 2025; 23:52 GMT

TreeBASE (cc) 1994-2008

Study reference:
Doust A., Penly A., Jacobs S., & Kellogg E. 2007. Congruence, Conflict, and Polyploidization
Shown by Nuclear and Chloroplast Markers in the Monophyletic “Bristle
Clade” (Paniceae, Panicoideae, Poaceae). Systematic Botany, 32(3): 531-544.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1731]

BEGIN TAXA;
        TITLE  kn1_full;
        DIMENSIONS NTAX=111;
        TAXLABELS
            'Cenchrus calyculatus A-a'
            'Cenchrus calyculatus A-b'
            'Cenchrus calyculatus E-a'
            'Cenchrus calyculatus E-b'
            'Cenchrus ciliaris 1-E-a'
            'Cenchrus ciliaris 1-E-b'
            'Cenchrus ciliaris 2-D-a'
            'Cenchrus ciliaris 2-D-b'
            'Cenchrus echinatus B-a'
            'Cenchrus echinatus B-b'
            Cenchrus_echinatus_D
            Cenchrus_myosuroides_D
            'Cenchrus myosuroides E-a'
            'Cenchrus myosuroides E-b'
            'Cenchrus pilosus E-a'
            'Cenchrus pilosus G-a'
            'Cenchrus setigerus F-a'
            'Cenchrus setigerus F-b'
            'Chaetium bromoides A-a'
            'Chaetium bromoides E-a'
            'Ixophorus unisetus 1-T-a'
            'Ixophorus unisetus 1-T-b'
            'Ixophorus unisetus 1-T-c'
            'Ixophorus unisetus 1-T-d'
            'Ixophorus unisetus 2-O-a'
            'Ixophorus unisetus 2-O-b'
            'Ixophorus unisetus 2-O-c'
            'Panicum miliaceum I-a'
            Paspalidium_aversum_F
            'Paspalidium aversum G-a'
            'Paspalidium aversum G-b'
            'Paspalidium distans 1-F-a'
            'Paspalidium distans 1-G-a'
            'Paspalidium distans 2-F-a'
            'Paspalidium distans 2-G-a'
            'Paspalidium jubiflorum E-a'
            'Paspalidium jubiflorum G-a'
            'Pennisetum alopecuroides B-a'
            'Pennisetum alopecuroides B-b'
            Pennisetum_alopecuroides_C
            'Pennisetum flaccidum 1-B'
            'Pennisetum flaccidum 1-C-a'
            'Pennisetum flaccidum 1-C-b'
            'Pennisetum flaccidum 2-D-a'
            'Pennisetum glaucum E-a'
            'Pennisetum glaucum E-b'
            Pennisetum_lanatum_D
            Pennisetum_lanatum_E
            Pennisetum_villosum_F
            'Pseudoraphis paradoxa F-a'
            'Pseudoraphis paradoxa F-b'
            'Pseudoraphis spinescens F-a'
            'Pseudoraphis spinescens F-b'
            'Searia palmifolia F-b'
            Setaria_barbata_A
            Setaria_barbata_E
            'Setaria geniculata G-a'
            'Setaria grisebachii F-a'
            'Setaria italica 1-H'
            'Setaria italica 2-F-a'
            Setaria_palmifolia_B
            'Setaria palmifolia F-a'
            'Setaria parviflora G-a'
            'Setaria parviflora G-b'
            'Setaria poiretiana 1-B-a'
            'Setaria poiretiana 1-B-b'
            'Setaria poiretiana 1-F-a'
            'Setaria poiretiana 2-B-a'
            'Setaria poiretiana 2-B-b'
            'Setaria poiretiana 2-G-a'
            'Setaria poiretiana 2-G-b'
            'Setaria pumila D-a'
            'Setaria pumila D-b'
            'Setaria pumila E-a'
            'Setaria pumila E-b'
            'Setaria sphacelata A-a'
            'Setaria sphacelata A-b'
            Setaria_sphacelata_D
            'Setaria verticillata 1-O'
            'Setaria verticillata 1-R'
            'Setaria verticillata 1-T'
            'Setaria verticillata 2-G-a'
            'Setaria verticillata 2-G-b'
            'Setaria viridis 1-H-a'
            'Setaria viridis 2-C'
            'Setaria viridis 2-D-a'
            Spinifex_sericeus_H
            'Spinifex sericeus I-a'
            'Stenotaphrum secundatum I-a'
            'Stenotaphrum secundatum I-b'
            'Zuloagea bulbosa 1-O'
            'Zuloagea bulbosa 1-R-a'
            'Zuloagea bulbosa 1-R-b'
            'Zuloagea bulbosa 1-R-c'
            'Zuloagea bulbosa 1-R-d'
            'Zuloagea bulbosa 2-O'
            'Zuloagea bulbosa 2-R-a'
            'Zuloagea bulbosa 2-R-b'
            'Zuloagea bulbosa 2-R-c'
            'Zuloagea bulbosa 3-O-a'
            'Zuloagea bulbosa 3-R-a'
            'Zuloagea bulbosa 3-R-b'
            'Zuloagea bulbosa 3-R-c'
            'Zuloagea bulbosa 4-C'
            'Zuloagea bulbosa 4-D'
            'Zuloagea bulbosa 4-F-a'
            'Zuloagea bulbosa 4-F-b'
            'Zygochloa paradoxa 1-G-a'
            'Zygochloa paradoxa 1-G-b'
            'Zygochloa paradoxa 2-G-a'
            'Zygochloa paradoxa 2-G-b'
            ;
END;

BEGIN TREES;
      TITLE Tb8202;
      LINK TAXA = kn1_full;
      TREE Fig._3 = [&R] ('Chaetium bromoides E-a',('Chaetium bromoides A-a',('Panicum miliaceum I-a',(((((((((('Cenchrus calyculatus A-a','Cenchrus calyculatus E-b'),('Cenchrus myosuroides E-a','Cenchrus myosuroides E-b'),('Cenchrus pilosus G-a','Cenchrus pilosus E-a')),('Cenchrus calyculatus E-a',((('Cenchrus ciliaris 1-E-a','Cenchrus echinatus B-b'),('Cenchrus ciliaris 1-E-b',(Cenchrus_echinatus_D,('Cenchrus echinatus B-a','Cenchrus setigerus F-a'),'Cenchrus setigerus F-b')),'Cenchrus ciliaris 2-D-b'),'Cenchrus ciliaris 2-D-a'))),'Cenchrus calyculatus A-b'),Cenchrus_myosuroides_D),((('Pennisetum alopecuroides B-b',Pennisetum_alopecuroides_C),Pennisetum_villosum_F),('Pennisetum alopecuroides B-a',('Pennisetum flaccidum 1-C-b',('Pennisetum glaucum E-b','Pennisetum glaucum E-a'))),(Pennisetum_lanatum_E,Pennisetum_lanatum_D))),('Pennisetum flaccidum 1-C-a','Pennisetum flaccidum 2-D-a','Pennisetum flaccidum 1-B')),(((('Paspalidium distans 1-G-a','Paspalidium distans 2-G-a'),'Paspalidium jubiflorum G-a'),(('Setaria italica 1-H','Setaria italica 2-F-a',(('Setaria viridis 2-C','Setaria viridis 2-D-a'),'Setaria viridis 1-H-a')),'Setaria verticillata 2-G-a'),(('Pseudoraphis paradoxa F-a','Pseudoraphis paradoxa F-b'),('Pseudoraphis spinescens F-a','Pseudoraphis spinescens F-b')),((((('Setaria geniculata G-a','Setaria pumila D-a'),'Setaria pumila E-a'),('Setaria parviflora G-a',(('Setaria parviflora G-b',Setaria_sphacelata_D),'Setaria sphacelata A-a'),'Setaria sphacelata A-b')),('Setaria pumila D-b','Setaria pumila E-b')),((Spinifex_sericeus_H,'Spinifex sericeus I-a'),((('Zygochloa paradoxa 1-G-a','Zygochloa paradoxa 2-G-a'),'Zygochloa paradoxa 1-G-b'),'Zygochloa paradoxa 2-G-b'))),((((('Zuloagea bulbosa 3-R-a','Zuloagea bulbosa 1-O'),'Zuloagea bulbosa 4-F-a'),'Zuloagea bulbosa 1-R-a'),('Zuloagea bulbosa 2-R-a','Zuloagea bulbosa 3-R-c')),((('Ixophorus unisetus 2-O-a','Ixophorus unisetus 2-O-b'),'Ixophorus unisetus 1-T-b'),'Ixophorus unisetus 2-O-c'))),'Paspalidium aversum G-a')),((((Setaria_barbata_E,Setaria_barbata_A),('Setaria poiretiana 1-B-a','Setaria poiretiana 1-F-a')),(('Setaria palmifolia F-a',(('Zuloagea bulbosa 4-C','Setaria poiretiana 2-B-a'),'Setaria poiretiana 2-B-b','Setaria poiretiana 2-G-a','Setaria poiretiana 2-G-b')),(Setaria_palmifolia_B,'Searia palmifolia F-b','Setaria poiretiana 1-B-b'))),('Setaria verticillata 2-G-b',(('Setaria verticillata 1-O','Setaria verticillata 1-T'),'Setaria verticillata 1-R')))),(('Setaria grisebachii F-a',((((('Zuloagea bulbosa 4-D',((('Zuloagea bulbosa 2-O','Zuloagea bulbosa 1-R-c'),'Zuloagea bulbosa 3-R-b'),'Zuloagea bulbosa 1-R-d')),('Zuloagea bulbosa 3-O-a',('Zuloagea bulbosa 2-R-b','Zuloagea bulbosa 2-R-c'))),'Zuloagea bulbosa 4-F-b'),'Zuloagea bulbosa 1-R-b'),('Ixophorus unisetus 1-T-a',('Ixophorus unisetus 1-T-c','Ixophorus unisetus 1-T-d')))),((('Paspalidium aversum G-b',Paspalidium_aversum_F,'Paspalidium distans 1-F-a','Paspalidium distans 2-F-a'),'Paspalidium jubiflorum E-a'),('Stenotaphrum secundatum I-a','Stenotaphrum secundatum I-b')))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr965]


END;