#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 15, 2021; 2:13 GMT TreeBASE (cc) 1994-2008 Study reference: Berger B.A., Lim A., Thompson V., Ricigliano V., & Howarth D.G. 2016. Elaboration of bilateral symmetry across Knautia macedonica capitula related to changes in ventral petal expression of CYCLOIDEA-like genes. EvoDevo, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18401] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=165; TAXLABELS Abelia_x_grandiflora_1 Abelia_x_grandiflora_3Aa Abelia_x_grandiflora_3Ab Bassecoia_bretschneideri_1 Bassecoia_bretschneideri_2A Bassecoia_bretschneideri_2Ba Bassecoia_bretschneideri_2Bb Bassecoia_bretschneideri_3B Centranthus_ruber_2A Centranthus_ruber_2Ba Centranthus_ruber_2Bb Centranthus_ruber_3A Centranthus_ruber_3B Cephalaria_hirsuta_1 Cephalaria_hirsuta_1B Cephalaria_hirsuta_2A Cephalaria_hirsuta_2Ba_1 Cephalaria_hirsuta_2Ba_2 Cephalaria_hirsuta_2Bb Cephalaria_humilis_1B Cephalaria_humilis_2A Cephalaria_humilis_2Ba_1 Cephalaria_humilis_2Ba_2 Cephalaria_humilis_2Bb Cryptothladia_chinensis_2Ba Cryptothladia_chinensis_2Bb Cryptothladia_chinensis_3A Cryptothladia_chinensis_3Ba Cryptothladia_chinensis_3Bb Cryptothladia_kokonorica_2A Cryptothladia_kokonorica_2Ba Cryptothladia_kokonorica_2Bb Cryptothladia_kokonorica_3Ba Cryptothladia_kokonorica_3Bb Diervilla_sessilifolia_1 Diervilla_sessilifolia_2A Diervilla_sessilifolia_2B Diervilla_sessilifolia_3A Dipelta_floribunda_1 Dipelta_floribunda_2A Dipelta_floribunda_2B Dipelta_floribunda_3A Dipelta_floribunda_3B Dipsacus_inermis_1 Dipsacus_inermis_2A Dipsacus_inermis_2Ba Dipsacus_pilosus_1 Dipsacus_pilosus_2Ba Dipsacus_pilosus_2Bb Dipsacus_pilosus_3B Fedia_cornucopiae_1 Fedia_cornucopiae_2A Fedia_cornucopiae_2Ba Fedia_cornucopiae_2Bb Fedia_cornucopiae_3A Fedia_cornucopiae_3B Heptacodium_miconioides_1 Heptacodium_miconioides_2B Heptacodium_miconioides_3A Heptacodium_miconioides_3B Knautia_calycina_1 Knautia_calycina_2A Knautia_calycina_2Ba_1 Knautia_calycina_2Ba_2 Knautia_calycina_2Ba_3 Knautia_calycina_2Bb_1 Knautia_calycina_2Bb_2 Knautia_calycina_3Ba Knautia_calycina_3Bb Knautia_macedonica_1 Knautia_macedonica_2A Knautia_macedonica_2Ba Knautia_macedonica_2Bb Knautia_macedonica_3A Knautia_macedonica_3Bb Kolkwitzia_amabilis_1 Kolkwitzia_amabilis_2A Kolkwitzia_amabilis_2B Kolkwitzia_amabilis_3A Kolkwitzia_amabilis_3B Leycesteria_formosa_1a Leycesteria_formosa_2A Leycesteria_sp_1b Linnaea_borealis_1 Linnaea_borealis_3A Lomelosia_crenata_1B Lomelosia_crenata_2A Lomelosia_crenata_2Ba_1 Lomelosia_crenata_2Ba_2 Lomelosia_crenata_2Bb Lonicera_heteroloba_1 Lonicera_heteroloba_2A Lonicera_heteroloba_2B Lonicera_heteroloba_3Aa Lonicera_heteroloba_3Ab Lonicera_reticulata_2A Lonicera_reticulata_3A Lonicera_reticulata_3B Morina_longifolia_2Ba Morina_longifolia_2Bb Morina_longifolia_3Ba Morina_longifolia_3Bb Patrinia_triloba_1 Patrinia_triloba_2A Patrinia_triloba_2B Patrinia_triloba_3B Pseudoscabiosa_limonifolia_2Ba Pseudoscabiosa_limonifolia_2Bb Pseudoscabiosa_limonifolia_3B Pterocephalus_strictus_1Ba Pterocephalus_strictus_1Bb Pterocephalus_strictus_2A Pterocephalus_strictus_2Ba_1 Pterocephalus_strictus_2Ba_2 Pterocephalus_strictus_2Ba_3 Pterocephalus_strictus_2Bb_1 Pterocephalus_strictus_2Bb_2 Pterocephalus_strictus_3A Pterocephalus_strictus_3B Pycnocomon_rutifolium_1B Pycnocomon_rutifolium_2A Pycnocomon_rutifolium_2Ba Pycnocomon_rutifolium_2Bb_1 Pycnocomon_rutifolium_2Bb_2 Pycnocomon_rutifolium_3A Scabiosa_angustiloba_1Ba Scabiosa_angustiloba_1Bb Scabiosa_angustiloba_2A Scabiosa_angustiloba_2Ba Scabiosa_angustiloba_2Bb Scabiosa_angustiloba_3A Scabiosa_columbaria_1 Sixalix_atropurpurea_1Ba Sixalix_atropurpurea_1Bb Sixalix_atropurpurea_1Bc Sixalix_atropurpurea_1Bd Sixalix_atropurpurea_2A Sixalix_atropurpurea_2Ba_1 Sixalix_atropurpurea_2Ba_2 Sixalix_atropurpurea_2Ba_3 Sixalix_atropurpurea_2Ba_4 Sixalix_atropurpurea_2Bb Sixalix_atropurpurea_3A Sixalix_atropurpurea_3B Sixalix_farinosa_2Ba Sixalix_farinosa_2Bb Symphoricarpos_occidentalis_1 Symphoricarpos_occidentalis_3A Symphoricarpos_occidentalis_3B Symphoricarpos_orbiculatus_1 Symphoricarpos_orbiculatus_2A Triosteum_himalayanum_1 Triosteum_himalayanum_2A Triosteum_himalayanum_2B Triosteum_himalayanum_3A Triplostegia_glandulifera_1 Triplostegia_glandulifera_2B Triplostegia_glandulifera_3B Valerianella_dentata_1 Valerianella_dentata_2B Valerianella_dentata_3B Weigela_hortensis_1 Weigela_hortensis_2A Weigela_hortensis_2B Weigela_hortensis_3A ; END; BEGIN TREES; TITLE Caprifoliaceae_CYC_RAxML; LINK TAXA = Taxa; TREE Caprifoliaceae_CYC = [&R] ((((Diervilla_sessilifolia_1:0.021963,Weigela_hortensis_1:0.008227):0.068846,(Heptacodium_miconioides_1:0.10324,(((Leycesteria_formosa_1a:0.007344,Leycesteria_sp_1b:0.008641):0.058908,(Lonicera_heteroloba_1:0.03251,(Symphoricarpos_occidentalis_1:0.020162,Symphoricarpos_orbiculatus_1:0.013133):0.02273):0.004853):0.002795,Triosteum_himalayanum_1:0.020874):0.05127):0.053263):0.081813,(((Kolkwitzia_amabilis_1:0.036828,(((((Dipsacus_pilosus_1:0.015383,Dipsacus_inermis_1:0.012197):0.031581,Cephalaria_hirsuta_1:0.049163):0.074937,((((Scabiosa_columbaria_1:0.017391,Pterocephalus_strictus_1Bb:1.0E-8):0.016905,Sixalix_atropurpurea_1Bd:0.037458):0.00122,((((Scabiosa_angustiloba_1Ba:1.0E-8,Cephalaria_hirsuta_1B:1.0E-8):0.0,(Sixalix_atropurpurea_1Ba:0.002797,Pycnocomon_rutifolium_1B:0.002817):0.002797):0.066864,((Sixalix_atropurpurea_1Bb:0.003043,Pterocephalus_strictus_1Ba:1.0E-8):0.01855,(Cephalaria_humilis_1B:0.029052,Lomelosia_crenata_1B:0.004119):0.010425):0.02887):0.011994,(Scabiosa_angustiloba_1Bb:1.0E-8,Sixalix_atropurpurea_1Bc:1.0E-8):0.029008):0.00465):0.071212,(Knautia_calycina_1:0.005195,Knautia_macedonica_1:0.007345):0.061528):0.020059):0.109531,(Bassecoia_bretschneideri_1:1.0E-8,Triplostegia_glandulifera_1:0.002988):0.059489):0.019622,(Patrinia_triloba_1:0.012221,(Valerianella_dentata_1:0.078956,Fedia_cornucopiae_1:0.074887):0.210314):0.073455):0.030804):0.010465,(Abelia_x_grandiflora_1:0.021009,Linnaea_borealis_1:0.016433):0.004711):0.008944,Dipelta_floribunda_1:0.005534):0.065946):0.251528,((((Diervilla_sessilifolia_2A:0.010962,Weigela_hortensis_2A:0.011728):0.069252,(((Leycesteria_formosa_2A:0.013405,((Lonicera_reticulata_2A:0.021898,Lonicera_heteroloba_2A:0.032702):0.005973,Symphoricarpos_orbiculatus_2A:0.031328):0.008873):0.003754,Triosteum_himalayanum_2A:0.021036):0.091578,((Cryptothladia_kokonorica_2A:0.172228,(Centranthus_ruber_2A:0.072857,Fedia_cornucopiae_2A:0.102462):0.19797):0.063304,((Patrinia_triloba_2A:0.088425,(Kolkwitzia_amabilis_2A:0.020437,Dipelta_floribunda_2A:0.007634):0.054679):0.01735,((((Sixalix_atropurpurea_2A:0.02599,Scabiosa_angustiloba_2A:0.026879):0.011342,Pterocephalus_strictus_2A:0.019875):0.008635,(Lomelosia_crenata_2A:0.02359,Pycnocomon_rutifolium_2A:0.004015):0.032999):0.046069,(Bassecoia_bretschneideri_2A:0.11192,((Knautia_macedonica_2A:0.071701,Knautia_calycina_2A:1.0E-8):0.0,((Cephalaria_hirsuta_2A:1.0E-8,Cephalaria_humilis_2A:1.0E-8):0.005189,Dipsacus_inermis_2A:0.042465):0.017004):0.017524):0.01487):0.098952):0.033585):0.105296):0.046268):0.117717,(((Diervilla_sessilifolia_2B:0.029401,Weigela_hortensis_2B:0.019904):0.046582,(Heptacodium_miconioides_2B:0.190329,(Lonicera_heteroloba_2B:0.036968,Triosteum_himalayanum_2B:0.025922):0.076687):0.058999):0.055223,((((Kolkwitzia_amabilis_2B:0.016728,Dipelta_floribunda_2B:1.0E-8):0.064515,(Triplostegia_glandulifera_2B:0.109243,(((((((((Scabiosa_angustiloba_2Ba:0.004257,(Pterocephalus_strictus_2Ba_2:1.0E-8,Pycnocomon_rutifolium_2Ba:1.0E-8):1.0E-8):0.009942,Pterocephalus_strictus_2Ba_1:0.008671):0.022403,(Sixalix_farinosa_2Ba:0.010053,(Cephalaria_humilis_2Ba_1:0.009135,Knautia_calycina_2Ba_2:1.0E-8):1.0E-8):0.014414):0.015935,((((Sixalix_atropurpurea_2Ba_2:1.0E-8,Lomelosia_crenata_2Ba_2:1.0E-8):0.0,Cephalaria_humilis_2Ba_2:1.0E-8):0.0,Cephalaria_hirsuta_2Ba_1:1.0E-8):0.0051,Knautia_calycina_2Ba_3:0.004618):0.025486):0.006665,(((Sixalix_atropurpurea_2Ba_1:1.0E-8,Lomelosia_crenata_2Ba_1:1.0E-8):0.0,(Knautia_calycina_2Ba_1:1.0E-8,Knautia_macedonica_2Ba:0.013274):0.009907):0.080029,(Sixalix_atropurpurea_2Ba_3:0.008893,(Sixalix_atropurpurea_2Ba_4:1.0E-8,(Pterocephalus_strictus_2Ba_3:1.0E-8,Cephalaria_hirsuta_2Ba_2:1.0E-8):0.0):0.0):0.107289):0.035502):0.037035,Bassecoia_bretschneideri_2Ba:0.094195):0.021802,((Dipsacus_pilosus_2Ba:0.010625,Dipsacus_inermis_2Ba:0.028978):0.033006,Pseudoscabiosa_limonifolia_2Ba:0.043239):0.034649):0.081413,((Cephalaria_hirsuta_2Bb:0.063818,Knautia_calycina_2Bb_1:0.014787):0.006554,(Knautia_macedonica_2Bb:0.101522,((Dipsacus_pilosus_2Bb:0.078341,Bassecoia_bretschneideri_2Bb:0.050309):0.020173,Pseudoscabiosa_limonifolia_2Bb:0.101122):0.007716):0.010988):0.027904):0.036345,((Scabiosa_angustiloba_2Bb:0.003962,((Sixalix_farinosa_2Bb:0.004802,Cephalaria_humilis_2Bb:1.0E-8):0.012309,(Pterocephalus_strictus_2Bb_2:1.0E-8,Pycnocomon_rutifolium_2Bb_2:0.007288):0.027813):0.017055):0.008806,((Sixalix_atropurpurea_2Bb:0.003668,(Pterocephalus_strictus_2Bb_1:1.0E-8,Pycnocomon_rutifolium_2Bb_1:0.003814):0.0):0.023759,(Lomelosia_crenata_2Bb:0.006351,Knautia_calycina_2Bb_2:0.020252):0.009983):0.007204):0.057558):0.097668):0.060431):0.00721,(Patrinia_triloba_2B:0.048349,((Centranthus_ruber_2Ba:0.076615,(Valerianella_dentata_2B:0.069286,(Fedia_cornucopiae_2Ba:0.011774,Fedia_cornucopiae_2Bb:0.086597):0.058437):0.012167):0.008638,Centranthus_ruber_2Bb:0.068803):0.052145):0.026456):0.020982,(((Cryptothladia_chinensis_2Ba:0.01006,Cryptothladia_kokonorica_2Ba:0.010873):0.008825,Morina_longifolia_2Ba:0.003903):0.058465,((Cryptothladia_chinensis_2Bb:0.003616,Cryptothladia_kokonorica_2Bb:0.007328):0.008455,Morina_longifolia_2Bb:0.009967):0.061846):0.035976):0.108542):0.208593):0.126423,(((((Diervilla_sessilifolia_3A:0.007953,Weigela_hortensis_3A:0.01983):0.069495,(Triosteum_himalayanum_3A:0.009027,((Lonicera_reticulata_3A:0.020176,Symphoricarpos_occidentalis_3A:0.017359):1.0E-8,(Lonicera_heteroloba_3Aa:0.012319,Lonicera_heteroloba_3Ab:0.00788):0.023769):0.005397):0.048182):0.013587,Heptacodium_miconioides_3A:0.045755):0.032862,((((Kolkwitzia_amabilis_3A:0.005911,(Abelia_x_grandiflora_3Aa:0.012364,Abelia_x_grandiflora_3Ab:0.012396):0.003084):0.006297,Linnaea_borealis_3A:0.047543):0.003428,Dipelta_floribunda_3A:0.011997):0.021811,(((Fedia_cornucopiae_3A:0.157879,Centranthus_ruber_3A:0.088678):0.066791,(Knautia_macedonica_3A:0.044189,(((Scabiosa_angustiloba_3A:1.0E-8,Pterocephalus_strictus_3A:0.003923):0.0,Sixalix_atropurpurea_3A:0.015091):0.009045,Pycnocomon_rutifolium_3A:0.009742):0.021636):0.156142):0.027033,Cryptothladia_chinensis_3A:0.075067):0.012169):0.047437):0.133245,((((((((Cryptothladia_kokonorica_3Ba:1.0E-8,Cryptothladia_chinensis_3Ba:1.0E-8):0.01009,Morina_longifolia_3Bb:0.009846):0.048933,((Cryptothladia_kokonorica_3Bb:1.0E-8,Cryptothladia_chinensis_3Bb:1.0E-8):0.035707,Morina_longifolia_3Ba:0.006552):0.020204):0.098788,(Kolkwitzia_amabilis_3B:0.013434,Dipelta_floribunda_3B:0.033089):0.033478):0.018662,Triplostegia_glandulifera_3B:0.102522):0.010481,((Patrinia_triloba_3B:0.063648,(Centranthus_ruber_3B:0.057945,(Valerianella_dentata_3B:0.079212,Fedia_cornucopiae_3B:0.103982):0.162127):0.216287):0.01508,((Dipsacus_pilosus_3B:0.064301,Pseudoscabiosa_limonifolia_3B:0.078044):0.029782,((((Pterocephalus_strictus_3B:0.008351,Knautia_calycina_3Ba:1.0E-8):0.028255,Sixalix_atropurpurea_3B:0.136921):0.066607,(Knautia_calycina_3Bb:1.0E-8,Knautia_macedonica_3Bb:0.009584):0.127852):0.027591,Bassecoia_bretschneideri_3B:0.070714):0.007101):0.10172):5.14E-4):0.072743,(Lonicera_reticulata_3B:0.020947,Symphoricarpos_occidentalis_3B:0.009867):0.048431):0.028782,Heptacodium_miconioides_3B:0.021517):0.231454):0.13452):0.062882); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr91299] END;