#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 11, 2025; 14:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Diao Y., Chen Q., Jiang X., Houbraken J., Cai L., & Wu W. 2018. Penicillium section
Lanata-Divaricata from acidic soil. Cladistics, 2018: 1-36.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S22177]

BEGIN TAXA;
        TITLE  Taxa;
        DIMENSIONS NTAX=103;
        TAXLABELS
            'Penicillium abidjanum CBS_246_67_RNA_po'
            'Penicillium annulatum CV0037_RNA_polyme'
            'Penicillium annulatum CV0187_RNA_polyme'
            'Penicillium annulatum CV0548_RNA_polymer'
            'Penicillium annulatum CV1707_RNA_polyme'
            'Penicillium araracuarense CBS_113149_RN'
            'Penicillium brasilianum CBS_253_55_RNA'
            'Penicillium brefeldianum CBS_235_81_RNA'
            'Penicillium caperatum CBS_443_75_RNA_po'
            'Penicillium cluniae CBS_326_89'
            'Penicillium coeruleum CBS_141_45_RNA_po'
            'Penicillium cremeogriseum CBS_223_66_RN'
            'Penicillium curticaule CV2842_RNA_polym'
            'Penicillium curticaule CV2857_RNA_polym'
            'Penicillium curticaule CV2858_RNA_polym'
            'Penicillium daleae CBS_211_28_RNA_polym'
            'Penicillium ehrlichii CBS_324_48_RNA_po'
            'Penicillium elleniae CBS_118135_RNA_pol'
            Penicillium_glabrum_CBS125543
            'Penicillium glaucoroseum NRRL908_RNA_po'
            'Penicillium griseopurpureum CBS_406_65'
            'Penicillium janthinellum CBS_340_48_RNA'
            'Penicillium javanicum CBS_341_48_RNA_po'
            'Penicillium levitum CBS_345_48_RNA_poly'
            'Penicillium limosum CBS_339_97_RNA_poly'
            'Penicillium lineolatum CBS_188_77_RNA_p'
            'Penicillium ludwigii CBS_417_68_RNA_pol'
            'Penicillium malacosphaerulum CV2836_RNA'
            'Penicillium malacosphaerulum CV2848_RNA'
            'Penicillium malacosphaerulum CV2855_RNA'
            'Penicillium mariae crucis_CBS_271_83_RN'
            'Penicillium meloforme CBS_445_74_RNA_po'
            'Penicillium ochrochloron CBS_357_48_RNA'
            'Penicillium oligosporum CBS_349_51_RNA'
            'Penicillium onobense CBS_174_81_RNA_pol'
            'Penicillium ortum CV0071_RNA_polymerase'
            'Penicillium ortum CV0095_RNA_polymerase'
            'Penicillium ortum CV0102_RNA_polymerase'
            'Penicillium ortum CV0391_RNA_polymerase'
            'Penicillium oxalicum CBS_173_81_RNA_p'
            'Penicillium oxalicum CBS_219_30_RNA_pol'
            'Penicillium oxalicum CV0822_RNA_polymer'
            'Penicillium paraherquei CBS_338_59_RNA'
            'Penicillium penarojense CBS_113178_RNA'
            'Penicillium piscarium CBS_362_48_RNA_po'
            'Penicillium pulvillorum CBS_275_83_RNA'
            'Penicillium pulvillorum CBS_280_39_RNA'
            'Penicillium raperi CBS_281_58_RNA_polym'
            'Penicillium reticulisporum CBS_122_68_R'
            'Penicillium reticulisporum CBS_513_74_RNA_poly'
            'Penicillium rolfsii CBS_368_48_RNA_poly'
            'Penicillium simplicissimum CBS_372_48_R'
            'Penicillium skrjabinii CBS439_75_RPB2'
            'Penicillium skrjabinii CV0085_RNA_polym'
            Penicillium_sp._NN044145_RPB2
            Penicillium_sp._NN044148_RPB2
            Penicillium_sp._NN044172
            Penicillium_sp._NN044180
            Penicillium_sp._NN044219_RPB2
            Penicillium_sp._NN051336
            Penicillium_sp._NN053344_RPB2
            Penicillium_sp._NN058252_RPB2
            Penicillium_sp._NN071640_RPB2
            Penicillium_sp._NN071679_RPB2
            Penicillium_sp._NN071784_RPB2_2
            Penicillium_sp._NN071814
            Penicillium_sp._NN072081_RPB2
            Penicillium_sp._NN072175_RPB2
            Penicillium_sp._NN072318_RPB2
            Penicillium_sp._NN072329_1_RPB2
            Penicillium_sp._NN072331_1_RPB2
            Penicillium_sp._NN072331_RPB2_2
            Penicillium_sp._NN072339_RPB2
            Penicillium_sp._NN072345_RPB2_F
            Penicillium_sp._NN072354_RPB2
            Penicillium_sp._NN072364_RPB2
            Penicillium_sp._NN072384_RPB2
            Penicillium_sp._NN072385_RPB2_R
            Penicillium_sp._NN072390_RPB2_2
            Penicillium_sp._NN072393_RPB2
            Penicillium_sp._NN072399_RPB2
            Penicillium_sp._NN072417_RPB2
            Penicillium_sp._NN072443_RPB2_2
            Penicillium_sp._NN072452_1_RPB2
            Penicillium_sp._NN072452_RPB2
            Penicillium_sp._NN072456_RPB2
            Penicillium_sp._NN072461_RPB2
            Penicillium_sp._NN072479_RPB2
            Penicillium_sp._NN072483
            Penicillium_sp._NN072498_RPB2
            Penicillium_sp._NN072506
            Penicillium_sp._NN072507_RPB2
            Penicillium_sp._NN072509_RPB2
            Penicillium_sp._NN072515_RPB2
            Penicillium_sp._NN072545_1_RPB2
            Penicillium_sp._NN072545_RPB2
            'Penicillium subrubescens CBS_129543_DNA'
            'Penicillium subrubescens DTO_188_D6_DNA'
            'Penicillium svalbardense CBS_122416_RNA'
            'Penicillium vanderhammenii CBS_126216_R'
            'Penicillium vasconiae CBS_339_79_RNA_po'
            'Penicillium wotroi CBS_118171_RNA_polym'
            'Penicillium zonatum CBS_992_72_RNA_poly'
            ;
END;

BEGIN TREES;
      TITLE 'Penicillium section Lanata-Divaricata RPB2 103b';
      LINK TAXA = Taxa;
      TREE con_50_majrule = [&R] (Penicillium_glabrum_CBS125543:0.662405,('Penicillium ehrlichii CBS_324_48_RNA_po':0.1474136,'Penicillium meloforme CBS_445_74_RNA_po':0.1317501,('Penicillium oxalicum CBS_219_30_RNA_pol':0.01580148,('Penicillium oxalicum CBS_173_81_RNA_p':0.003642277,'Penicillium oxalicum CV0822_RNA_polymer':0.003600471):0.05767462):1.036313,(('Penicillium coeruleum CBS_141_45_RNA_po':0.00371042,'Penicillium levitum CBS_345_48_RNA_poly':0.00372187):0.1886259,('Penicillium caperatum CBS_443_75_RNA_po':0.03143903,'Penicillium elleniae CBS_118135_RNA_pol':0.1011629,('Penicillium javanicum CBS_341_48_RNA_po':0.003675799,'Penicillium oligosporum CBS_349_51_RNA':0.003668967):0.05566561,(('Penicillium reticulisporum CBS_122_68_R':0.00365056,'Penicillium reticulisporum CBS_513_74_RNA_poly':0.003634528):0.03232012,('Penicillium malacosphaerulum CV2836_RNA':0.003662527,'Penicillium malacosphaerulum CV2848_RNA':0.003732242,'Penicillium malacosphaerulum CV2855_RNA':0.00372515):0.03813962):0.009149515):0.07087213):0.04453076,('Penicillium lineolatum CBS_188_77_RNA_p':0.07148537,((Penicillium_sp._NN051336:0.07098239,'Penicillium raperi CBS_281_58_RNA_polym':0.0435735):0.08325785,('Penicillium brefeldianum CBS_235_81_RNA':0.04806478,'Penicillium limosum CBS_339_97_RNA_poly':0.01315356):0.1404195,('Penicillium curticaule CV2842_RNA_polym':0.003674879,'Penicillium curticaule CV2857_RNA_polym':0.003632769,'Penicillium curticaule CV2858_RNA_polym':0.003642305):0.1306605,(('Penicillium ortum CV0102_RNA_polymerase':0.00379406,'Penicillium ortum CV0391_RNA_polymerase':0.003718089,('Penicillium ortum CV0071_RNA_polymerase':0.003674919,'Penicillium ortum CV0095_RNA_polymerase':0.003703664):0.01297198):0.08692332,('Penicillium cremeogriseum CBS_223_66_RN':0.07148693,'Penicillium ludwigii CBS_417_68_RNA_pol':0.0345482,(Penicillium_sp._NN072417_RPB2:0.03436717,'Penicillium janthinellum CBS_340_48_RNA':0.008372775):0.04478685,('Penicillium cluniae CBS_326_89':0.03752338,'Penicillium glaucoroseum NRRL908_RNA_po':0.02479706):0.01403625):0.05934723):0.04823982):0.06500866):0.1279974,(('Penicillium vasconiae CBS_339_79_RNA_po':0.1625232,(Penicillium_sp._NN072329_1_RPB2:0.1444094,((Penicillium_sp._NN071784_RPB2_2:0.02766923,(Penicillium_sp._NN071640_RPB2:0.01019854,Penicillium_sp._NN071814:0.004731381):0.03542577):0.1502531,(('Penicillium annulatum CV0187_RNA_polyme':0.02056696,('Penicillium annulatum CV0037_RNA_polyme':0.02711063,('Penicillium annulatum CV0548_RNA_polymer':0.008848814,'Penicillium annulatum CV1707_RNA_polyme':0.00363016):0.01849577):0.02620465):0.05574596,(Penicillium_sp._NN071679_RPB2:0.1547345,(Penicillium_sp._NN044219_RPB2:0.01407664,Penicillium_sp._NN072390_RPB2_2:0.003598331,Penicillium_sp._NN072399_RPB2:0.008856577):0.1398099,(('Penicillium pulvillorum CBS_275_83_RNA':0.01462603,'Penicillium pulvillorum CBS_280_39_RNA':0.01414805):0.1202799,(('Penicillium piscarium CBS_362_48_RNA_po':0.09213182,'Penicillium rolfsii CBS_368_48_RNA_poly':0.2087419):0.03229554,(Penicillium_sp._NN058252_RPB2:0.09632528,(('Penicillium ochrochloron CBS_357_48_RNA':0.04555767,'Penicillium svalbardense CBS_122416_RNA':0.05266632):0.08202326,((Penicillium_sp._NN072393_RPB2:0.004191788,Penicillium_sp._NN072483:0.003767741):0.08746922,('Penicillium subrubescens CBS_129543_DNA':0.02033978,'Penicillium subrubescens DTO_188_D6_DNA':0.01882591):0.06688934):0.02283864):0.02890396):0.02280948):0.02266467):0.0139787):0.0304849):0.08414842):0.03252278):0.05204101):0.02953441,(('Penicillium zonatum CBS_992_72_RNA_poly':0.1054515,('Penicillium abidjanum CBS_246_67_RNA_po':0.1559688,(('Penicillium penarojense CBS_113178_RNA':0.09282671,'Penicillium vanderhammenii CBS_126216_R':0.0912524):0.04676887,((Penicillium_sp._NN053344_RPB2:0.003713724,Penicillium_sp._NN072081_RPB2:0.003712364):0.009197449,(Penicillium_sp._NN072318_RPB2:0.003607814,Penicillium_sp._NN072385_RPB2_R:0.00378767):0.1623113):0.1370262):0.08819322,((Penicillium_sp._NN072175_RPB2:0.008880573,'Penicillium daleae CBS_211_28_RNA_polym':0.009179787):0.09723438,(Penicillium_sp._NN072479_RPB2:0.01703229,((Penicillium_sp._NN044148_RPB2:0.003745321,Penicillium_sp._NN072384_RPB2:0.003811864):0.009004117,('Penicillium griseopurpureum CBS_406_65':0.02173948,(Penicillium_sp._NN044145_RPB2:0.003777942,Penicillium_sp._NN072456_RPB2:0.01986855):0.04484142):0.00881705):0.008832033):0.1122439):0.0349859):0.0775097):0.07726309,(('Penicillium skrjabinii CBS439_75_RPB2':0.04621423,('Penicillium onobense CBS_174_81_RNA_pol':0.02689297,'Penicillium skrjabinii CV0085_RNA_polym':0.0305167,('Penicillium brasilianum CBS_253_55_RNA':0.07141657,'Penicillium paraherquei CBS_338_59_RNA':0.07125696):0.02790924):0.009402996):0.05043991,(Penicillium_sp._NN072345_RPB2_F:0.1101883,('Penicillium simplicissimum CBS_372_48_R':0.07553915,(((Penicillium_sp._NN072509_RPB2:0.003641225,Penicillium_sp._NN072515_RPB2:0.003661735):0.02351086,(Penicillium_sp._NN072364_RPB2:0.003616942,Penicillium_sp._NN072498_RPB2:0.003647739,Penicillium_sp._NN072507_RPB2:0.003618167):0.01130586):0.05307512,(((Penicillium_sp._NN072545_1_RPB2:0.003642052,Penicillium_sp._NN072545_RPB2:0.003623934):0.04734509,((Penicillium_sp._NN072452_1_RPB2:0.003603842,Penicillium_sp._NN072452_RPB2:0.003634385):0.0982649,('Penicillium araracuarense CBS_113149_RN':0.05907827,'Penicillium wotroi CBS_118171_RNA_polym':0.2150459):0.05697131):0.03007319):0.026421,(('Penicillium mariae crucis_CBS_271_83_RN':0.1075618,(Penicillium_sp._NN072331_1_RPB2:0.003625628,Penicillium_sp._NN072331_RPB2_2:0.003560785):0.05386489):0.01113924,(Penicillium_sp._NN072339_RPB2:0.04354936,(Penicillium_sp._NN044172:0.003839542,Penicillium_sp._NN044180:0.003818945):0.06935623,(Penicillium_sp._NN072461_RPB2:0.003798707,Penicillium_sp._NN072506:0.003695854,(Penicillium_sp._NN072354_RPB2:0.009974589,Penicillium_sp._NN072443_RPB2_2:0.009310357):0.009778588):0.03339938):0.01261437):0.02215212):0.02375244):0.02142968):0.02352128):0.04875236):0.1842076):0.04471227):0.09826097):0.662405);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr122977]


END;