#NEXUS

[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 01, 2025; 12:12 GMT

TreeBASE (cc) 1994-2008

Study reference:
Maier W., Begerow D., Weifl M., & Oberwinkler F. 2003. Phylogeny of the rust fungi:
an approach using nuclear large subunit ribosomal DNA sequences. Canadian Journal
of Botany, 81: 12-23.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S868]

BEGIN TAXA;
        TITLE  TaxonLabelSet10867;
        DIMENSIONS NTAX=55;
        TAXLABELS
            Chrysomyxa_ledi
            Chrysomyxa_rhododendri
            Coleosporium_asterum
            Coleosporium_cacaliae
            Coleosporium_campanulae
            Coleosporium_tussilaginis
            Cronartium_flaccidum
            Cronartium_ribicola
            Cumminsiella_mirabilissima
            'Endophyllum euphorbiae-sylvaticae'
            Eocronartium_muscicola
            Gymnosporangium_clavariiforme
            Gymnosporangium_cornutum
            Gymnosporangium_sabinae
            Herpobasidium_filicinum
            Hyalopsora_polypodii
            Kuehneola_uredinis
            Melampsora_euphorbiae
            Melampsora_helioscopiae
            Melampsora_hypericorum
            Melampsorella_caryophyllacearum
            Melampsoridium_betulinum
            Milesia_scolopendri
            Naohidemyces_vaccinii
            Ochropsora_ariae_I
            Ochropsora_ariae_III
            Phragmidium_fragariae
            Phragmidium_montivagum
            'Phragmidium rubi-idaei'
            Phragmidium_sanguisorbae
            Phragmidium_violaceum
            Puccinia_coronata
            Puccinia_gigantea
            Puccinia_malvacearum
            'Puccinia urticae-acutiformis'
            Pucciniastrum_agrimoniae
            Pucciniastrum_circaeae
            Pucciniastrum_epilobii
            Pucciniastrum_pyrolae
            Septobasidium_carestianum
            Thekopsora_areolata
            Thekopsora_guttata
            Thekopsora_symphyti
            Trachyspora_intrusa
            Tranzschelia_discolor
            Tranzschelia_fusca
            'Tranzschelia pruni-spinosae'
            Triphragmium_ulmariae
            Uredinopsis_filicina
            Uredo_alpestris
            Uromyces_ficariae
            Uromyces_gageae
            Uromyces_junci
            Uromyces_pisi
            'Uromyces viciae-fabae'
            ;
END;

BEGIN TREES;
      TITLE Tb6221;
      LINK TAXA = TaxonLabelSet10867;
      TREE Fig._1 = [&R] ((Septobasidium_carestianum,(Eocronartium_muscicola,Herpobasidium_filicinum))outgroup_to_Uredinales,((Melampsora_euphorbiae,(Melampsora_hypericorum,Melampsora_helioscopiae))Melampsora._Melampsoraceae,(((((Puccinia_gigantea,('Uromyces viciae-fabae',('Endophyllum euphorbiae-sylvaticae',Uromyces_pisi)),Uromyces_junci,Uromyces_ficariae),'Puccinia urticae-acutiformis'),(Cumminsiella_mirabilissima,(Puccinia_coronata,Uromyces_gageae))),Puccinia_malvacearum)'Puccinia/Uromyces cluster. Pucciniaceae',((Gymnosporangium_sabinae,Gymnosporangium_cornutum),Gymnosporangium_clavariiforme)Gymnosporangium._Pucciniaceae,(Uredo_alpestris,(((((Phragmidium_montivagum,Phragmidium_fragariae),((Phragmidium_violaceum,'Phragmidium rubi-idaei'),Phragmidium_sanguisorbae))Phragmidium,Kuehneola_uredinis),Triphragmium_ulmariae),Trachyspora_intrusa)Phragmidiaceae),((Ochropsora_ariae_I,Ochropsora_ariae_III)Ochropsora,(Tranzschelia_discolor,('Tranzschelia pruni-spinosae',Tranzschelia_fusca))Tranzschelia)'Ochropsora/Tranzschelia cluster. Raveneliaceae-Uropyxideae'),(((Pucciniastrum_epilobii,Pucciniastrum_circaeae)Pucciniastrum,(Thekopsora_symphyti,Thekopsora_guttata)Thekopsora),Melampsorella_caryophyllacearum),Melampsoridium_betulinum,Hyalopsora_polypodii,((((Pucciniastrum_pyrolae,Thekopsora_areolata),(Cronartium_flaccidum,Cronartium_ribicola)Cronartium),Pucciniastrum_agrimoniae),((Coleosporium_asterum,(Coleosporium_tussilaginis,Coleosporium_cacaliae,Coleosporium_campanulae))Coleosporium,(Chrysomyxa_rhododendri,Chrysomyxa_ledi)Chrysomyxa)Coleosporiaceae),(Milesia_scolopendri,Uredinopsis_filicina),Naohidemyces_vaccinii)Uredinales);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4022]


END;