#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 9:43 GMT TreeBASE (cc) 1994-2008 Study reference: Delgado-salinas A., Turley T., Richman A., & Lavin M. 1999. Phylogenetic analysis of cultivated and wild species of Phaseolus (Fabaceae). Systematic Botany, 24: 438-460. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S883] BEGIN TAXA; TITLE combined; DIMENSIONS NTAX=132; TAXLABELS Dolichopsis_paraguarensis Macroptilium_atropurpureum Macroptilium_erythroloma Mysanthus_uleanus Oxyrhynchus_trinervius Oxyrhynchus_volubilis Phaseolus_acutifolius_14 Phaseolus_acutifolius_150 Phaseolus_acutifolius_151 Phaseolus_acutifolius_235 Phaseolus_acutifolius_236 Phaseolus_acutifolius_237 Phaseolus_acutifolius_238 Phaseolus_acutifolius_239 Phaseolus_albescens_201 Phaseolus_albescens_302 Phaseolus_albescens_54 Phaseolus_amblyosepalus_221 Phaseolus_amblyosepalus_88 Phaseolus_angustissimus_133 Phaseolus_augustii_168 Phaseolus_augustii_17 Phaseolus_bolivianus Phaseolus_chiapasanus_300 Phaseolus_chiapasanus_7 Phaseolus_coccineus_153 Phaseolus_coccineus_174 Phaseolus_coccineus_186 Phaseolus_coccineus_231 Phaseolus_coccineus_301 Phaseolus_coccineus_56 Phaseolus_coccineus_57 Phaseolus_coccineus_58 Phaseolus_coccineus_76 Phaseolus_costaricensis Phaseolus_filiformis_121 Phaseolus_filiformis_20 Phaseolus_glabellus_21 Phaseolus_glabellus_241 Phaseolus_grayanus_130 Phaseolus_grayanus_161 Phaseolus_hintonii Phaseolus_jaliscanus Phaseolus_juquilensis_156 Phaseolus_juquilensis_99 Phaseolus_leptostachyus_179 Phaseolus_leptostachyus_24 Phaseolus_leptostachyus_25 Phaseolus_leptostachyus_307 Phaseolus_lignosus Phaseolus_lunatus_124 Phaseolus_lunatus_189 Phaseolus_lunatus_204 Phaseolus_lunatus_230 Phaseolus_lunatus_27 Phaseolus_lunatus_308 Phaseolus_macrolepis Phaseolus_maculatus Phaseolus_maculatus_191 Phaseolus_maculatus_234 Phaseolus_macvaughii Phaseolus_marechalii_170 Phaseolus_marechalii_305 Phaseolus_micranthus Phaseolus_microcarpus_131 Phaseolus_microcarpus_32 Phaseolus_mollis Phaseolus_neglectus_242 Phaseolus_neglectus_33 Phaseolus_nelsonii Phaseolus_oaxacanus_163 Phaseolus_oaxacanus_35 Phaseolus_oligospermus_157 Phaseolus_oligospermus_203 Phaseolus_oligospermus_36 Phaseolus_pachyrhizoides Phaseolus_parvulus Phaseolus_pauciflorus Phaseolus_pedicellatus_39 Phaseolus_pedicellatus_40 Phaseolus_pedicellatus_42 Phaseolus_perplexus_194 Phaseolus_perplexus_208 Phaseolus_plagiocylix Phaseolus_pluriflorus_3 Phaseolus_pluriflorus_4 Phaseolus_polyanthus_119 Phaseolus_polyanthus_295 Phaseolus_polyanthus_53 Phaseolus_polystachios_125 Phaseolus_polystachios_145 Phaseolus_ritensis_205 Phaseolus_ritensis_44 Phaseolus_ritensis_45 Phaseolus_salicifolius Phaseolus_sinuatus Phaseolus_smilacifolius Phaseolus_sonorensis Phaseolus_tenellus Phaseolus_tuerckheimii_128 Phaseolus_tuerckheimii_50 Phaseolus_viridis Phaseolus_vulgaris_118 Phaseolus_vulgaris_120 Phaseolus_vulgaris_175 Phaseolus_vulgaris_176 Phaseolus_vulgaris_177 Phaseolus_vulgaris_233 Phaseolus_vulgaris_303 Phaseolus_vulgaris_304 Phaseolus_vulgaris_59 Phaseolus_vulgaris_60 Phaseolus_vulgaris_Z48779 Phaseolus_xanthotrichus_10 Phaseolus_xanthotrichus_9 Phaseolus_xolocotzii_165 Phaseolus_xolocotzii_207 Phaseolus_zimapanensis_11 Phaseolus_zimapanensis_123 Phaseolus_zimapanensis_37 Phaseolus_zimapanensis_43 Ramirezella_micrantha Ramirezella_strobilophora Strophostyles_helvola Strophostyles_umbellata Vigna_adenantha Vigna_caracalla Vigna_gentryi Vigna_linearis Vigna_peduncularis Vigna_populnea Vigna_speciosa ; END; BEGIN TREES; TITLE Tb6244; LINK TAXA = combined; TREE 'Fig. 1, 2, 3' = [&R] (((((((((Oxyrhynchus_volubilis,Oxyrhynchus_trinervius),Vigna_populnea),((Vigna_gentryi,Vigna_adenantha),(Ramirezella_micrantha,Ramirezella_strobilophora))),Vigna_caracalla),((Vigna_speciosa,Vigna_peduncularis),Vigna_linearis)),((Strophostyles_umbellata,Strophostyles_helvola),Dolichopsis_paraguarensis)),Mysanthus_uleanus),(Macroptilium_atropurpureum,Macroptilium_erythroloma)),(((((((Phaseolus_acutifolius_14,((Phaseolus_acutifolius_151,(Phaseolus_acutifolius_235,Phaseolus_acutifolius_236,Phaseolus_acutifolius_237,Phaseolus_acutifolius_238)),Phaseolus_acutifolius_239)),Phaseolus_acutifolius_150),((((Phaseolus_costaricensis,((Phaseolus_polyanthus_119,Phaseolus_polyanthus_295),Phaseolus_polyanthus_53)),(Phaseolus_coccineus_56,(((Phaseolus_coccineus_57,Phaseolus_coccineus_58),Phaseolus_coccineus_301),Phaseolus_coccineus_76,Phaseolus_coccineus_174,Phaseolus_coccineus_186),(Phaseolus_coccineus_231,Phaseolus_coccineus_153))),((Phaseolus_albescens_54,Phaseolus_albescens_201),Phaseolus_albescens_302)),(Phaseolus_vulgaris_59,(Phaseolus_vulgaris_60,Phaseolus_vulgaris_177),Phaseolus_vulgaris_176,Phaseolus_vulgaris_233,Phaseolus_vulgaris_118,(Phaseolus_vulgaris_120,Phaseolus_vulgaris_Z48779),Phaseolus_vulgaris_304,Phaseolus_vulgaris_303,Phaseolus_vulgaris_175)))Phaseolus_vulgaris_group,(((((((Phaseolus_mollis,Phaseolus_lunatus_27),Phaseolus_lunatus_189),(Phaseolus_lunatus_204,(Phaseolus_lunatus_230,Phaseolus_lunatus_308)),Phaseolus_lunatus_124),((Phaseolus_viridis,Phaseolus_lignosus),((Phaseolus_pachyrhizoides,Phaseolus_augustii_17,Phaseolus_augustii_168),Phaseolus_bolivianus)))Phaseolus_lunatus_group,((((Phaseolus_salicifolius,(Phaseolus_juquilensis_156,Phaseolus_juquilensis_99)),(((Phaseolus_maculatus,Phaseolus_maculatus_191),(Phaseolus_xolocotzii_165,Phaseolus_xolocotzii_207)),(Phaseolus_marechalii_170,Phaseolus_marechalii_305)),((Phaseolus_smilacifolius,Phaseolus_polystachios_125),Phaseolus_sinuatus),Phaseolus_polystachios_145),Phaseolus_jaliscanus),((Phaseolus_sonorensis,((Phaseolus_ritensis_44,Phaseolus_ritensis_205),Phaseolus_ritensis_45)),Phaseolus_maculatus_234))Phaseolus_polystachios_group),(Phaseolus_macvaughii,(((Phaseolus_leptostachyus_179,(Phaseolus_leptostachyus_24,Phaseolus_leptostachyus_25)),Phaseolus_micranthus),Phaseolus_leptostachyus_307))Phaseolus_leptostachyus_group),(((((Phaseolus_parvulus,Phaseolus_tenellus),Phaseolus_pauciflorus),Phaseolus_plagiocylix),((Phaseolus_nelsonii,(Phaseolus_amblyosepalus_88,Phaseolus_amblyosepalus_221)),(Phaseolus_pluriflorus_4,Phaseolus_pluriflorus_3))),(Phaseolus_perplexus_194,Phaseolus_perplexus_208))Phaseolus_pauciflorus_group)),((Phaseolus_filiformis_20,Phaseolus_filiformis_121),Phaseolus_angustissimus_133)Phaseolus_filiformis_group),(((((Phaseolus_chiapasanus_7,Phaseolus_chiapasanus_300),(((Phaseolus_xanthotrichus_9,Phaseolus_xanthotrichus_10),Phaseolus_hintonii),((Phaseolus_zimapanensis_37,Phaseolus_zimapanensis_123,Phaseolus_zimapanensis_43),Phaseolus_zimapanensis_11))),(((Phaseolus_tuerckheimii_128,Phaseolus_tuerckheimii_50),Phaseolus_oligospermus_36,Phaseolus_oligospermus_203),Phaseolus_oligospermus_157)),Phaseolus_macrolepis)Phaseolus_tuerckheimii_group,((((Phaseolus_neglectus_242,Phaseolus_neglectus_33),Phaseolus_grayanus_161),(Phaseolus_pedicellatus_39,(Phaseolus_pedicellatus_40,Phaseolus_pedicellatus_42)),Phaseolus_grayanus_130,(Phaseolus_glabellus_241,Phaseolus_glabellus_21)),(Phaseolus_oaxacanus_163,Phaseolus_oaxacanus_35))Phaseolus_pedicellatus_group)),(Phaseolus_microcarpus_32,Phaseolus_microcarpus_131)Phaseolus_microcarpus_clade)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5698] END;