#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 15, 2026; 19:18 GMT TreeBASE (cc) 1994-2008 Study reference: Marques M.W., Lima N.B., De morais junior M., Barbosa M.G., Michereff S.J., Phillips A.J., & Camara M.P. 2012. Diversity of botryosphaeriaceae associated with Mangifera indica in Brazil. Fungal Diversity, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13281] [ The following blocks are input data for analysis step 10025 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10025; DIMENSIONS NTAX=17; TAXLABELS Botryosphaeria_dothidea_CAP_288 Botryosphaeria_dothidea_CMW_8000 Pseudofusicoccum_adansoniae_CBS_122054 Pseudofusicoccum_adansoniae_WAC_13299 Pseudofusicoccum_ardesiacum_CBS_122062 Pseudofusicoccum_ardesiacum_WAC_13294 Pseudofusicoccum_kimberleyense_CBS122061 Pseudofusicoccum_kimberleyense_WAC13293 Pseudofusicoccum_stromaticum_CMM_3953 Pseudofusicoccum_stromaticum_CMM_3961 Pseudofusicoccum_stromaticum_CMM_3964 Pseudofusicoccum_stromaticum_CMM_3965 Pseudofusicoccum_stromaticum_CMM_3967 Pseudofusicoccum_stromaticum_CMM_3971 Pseudofusicoccum_stromaticum_CMM_3978 Pseudofusicoccum_stromaticum_CMW_13434 Pseudofusicoccum_stromaticum_CMW_13435 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14113] TITLE Pseudofusicoccum; LINK TAXA = TaxaForAnalysisStep10025; DIMENSIONS NCHAR=1175; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Botryosphaeria_dothidea_CAP_288 -------------------------------------------TCCGTAGGTGAACCTGCGGAAGGATCATTACCGAGTTGATTCGG---GCTCCGGCCCGATCCTCCCACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTCCTCCGCGGCC-----GGCCCCCCTCCCCGGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAGTCTGAAAAACATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTC--TGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCA-CCGTCCTTTGCGGGCGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCAGGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA???CATCGAGAAGTTCGAGAAGGTAAGC-ACGCATTTT-----CTGTGCCTGCACGTGTGCTGGGTTCCTGC--------------GCCGAATTTGCCTTATCACTCTGGTGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGATTTTTTGTGACCGGCGTGCGACCGA------------CGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Botryosphaeria_dothidea_CMW_8000 ------------------------------------------------------------GGAAGGATCATTACCGAGTTGATTCGG---GCTCCGGCCCGATCCTCCCACCCTTTGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTCCTCCGCGGCC-----GGCCCCCCTCCCCGGGGGGTGGCCAGCGCCCGCCAGAGGACCATCAAACTCCAGTCAGTAAACGATGCAGTCTGAAAAACATTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTC--TGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCA-CCGTCCTTTGCGGGCGCGCCTCAAAGACCTCGGCGGTGGCGTCTTGCCTCAAGCGTAGTAGAACATACATCTCGCTTCGGAGCGCAGGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTCTCAAGGTTGACCTCGGAT???G----------------------------------------------------AAGTTCGAGAAGGTAAGC-ACACATTTT-----CTGTGCCTGCACGTGTGCTGGGTTCCTGC--------------GCCGAATTTGCCTTATCACTCTGGTGAGGGGCAATTTCTTGGTGGGGCTGGCCCGCGCTAAGCCTCGTTTGGTCTTCGGCAAAATCTCCGCATCTGGATTTTTTGTGACCGGCGTGCGACCGA------------CGCGAACACCCCTCACCAACGCTTCCAGCCACTCACGTTCGTCTATGCGACCATATGCTAACCACCGCCACAACAGGAAGCCGCTGAGCTCGGTAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_adansoniae_CBS_122054 -------------------------------------------ATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCGGGCCAGCCCCGATCAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTT---TGCCCGACGCCACCCGTGTGCATCGGTCTCGCTGCACGCAATTTTGGCCGCGTTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTCGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAAATTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCGCCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_adansoniae_WAC_13299 ---------------------------------------------CCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCGGGCCAGCCCCGATCAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTT---TGCCCGACGCCACCCGTGTGCATCGGTCTCGCTGCACGCAATTTTGGCCGCGTTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTCGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAAATTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCGCCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_ardesiacum_CBS_122062 -------------------------------------------ATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGGGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAATACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGCTAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTTTTTGCCCGACGCCACCCATGTGCAGCGATCTCGCTGCACGCAATTCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCCGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCGCAACA---GGAAGCCGCTGAGCTCGGCAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_ardesiacum_WAC_13294 ----------------------------------------------CGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGGGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAATACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGCTAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTTTTTGCCCGACGCCACCCATGTGCAGCGATCTCGCTGCACGCAATTCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCCGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCGCCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_kimberleyense_CBS122061 -------------------------------------------ATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAATACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGCTAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTTTTTGCCCGACGCCACCCATGTGCAGCGATCTCGCTGCATGCAATTCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTCGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCCGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGTAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_kimberleyense_WAC13293 ------------------------------------------------AGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGAGAGGACGCTGCCCAATACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTATATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGCCCTCTGGCGGGCGCAGGCCAGCCCCGGCTAGGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGGTGAAGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTTTTTGCCCGACGCCACCCATGTGCAGCGATCTCGCTGCATGCAATTCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTCGGTCTGCGCTAGGCCGCGTCGGTCGCTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCCGCCCGAGCGTGCATGG?GCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCGCCACA---GGAAGCCGGTGAGCTCGGCAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_stromaticum_CMM_3953 -----TTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGGTT???------------ATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAGG Pseudofusicoccum_stromaticum_CMM_3961 ------TATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGGTT???TCGGTCACTTG-ATCTACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGTTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTACTGGTGA-------- Pseudofusicoccum_stromaticum_CMM_3964 -----TTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGG???--------------------AAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTACTG------------ Pseudofusicoccum_stromaticum_CMM_3965 -----TTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGGT???A-------------------AGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGTTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACA--------------------------------------------------------------------- Pseudofusicoccum_stromaticum_CMM_3967 TCCGCTTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAG???C--------------------AAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTACTGG----------- Pseudofusicoccum_stromaticum_CMM_3971 TCCGCTTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGG???TA-----------------CAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTACTGGTGAGTTCGAG- Pseudofusicoccum_stromaticum_CMM_3978 TCCGCTTATTGATATGCTTAAGTTCAGCGGGTATCCCTACCTGATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCCGCAGG???-------------------CAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGTTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTCCTCGACAAGCTGAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTCTGGAAGTTCGAAACCCCGAAGTACTATGTCACCGTCATTGACGCCCCCGGCCACCGTGACTTCATCAAGAACATGATCACTGGTACCTCCCAGGCCGACTGCGCCATTCTCATCATTGCCGCCGGTA--------------- Pseudofusicoccum_stromaticum_CMW_13434 -------------------------------------------ATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGTAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudofusicoccum_stromaticum_CMW_13435 -------------------------------------------ATCCGAGGTCAACCTA-GGAAAATGAATTCAAAGGTTCGTCCGGCGAGCGGTCGTCCCGTCCTCCAAAGCGAGGTGTTTTCTACTACGCT--TGAGGCAAGACGCCA-CCGCCGAGGTCTTTGAGGCGCGTCCGGGAGGACGCCGCCCAACACCAAGCAGAGCTTGAGGGGTGTAATGACGCTCGAACAGGCATGCCCTTCGGAATACCAAAGGGCGCAATGTGCGTTCAAAGATTCGATGATTCACTGAATTCTGCAATTCACATTACTTATCGCATTTCGCTGCGTTCTTCATCGATGCCAG--AACCAAGAGATCCGTTGTTGAAAGTTTTAGTTTATTGAATTTAAATCAGACAGCAAAGTTCACTGACTGGAGTTTTGTGGTCCTCTGGCGGGCGCAGGCCAGCCCCGGTCAAGGGGCCGGCCGCGGAGAACC--------GCGGCCCGCCAAAGCAACAGAGGTAGGTACACAAAGGGTTGGAGAGTGGG------CTCGATGAGGAGACCC---AAAACTCGGTAATGATCCTTCC???G---------------------------------------------------------AAGTTCGAGAAGGTGAGCCAGACTTTTT--TTGCCGACACCACCCATGTGCAGCGATCTCGCTGCACGCAATCCTGGCCGGATTTGCCT-ATCACTC-GATGAGGGGCATTTTCGTGGTGGGGTTGGTCGGCGCTAGGCCGCGTCGGTCGTTCGGCAAAATGCCCGCTTTGGGTTTTTTTGCGACCGGCGTCAGCCCGAGCGTGCATGGTGCACGACCGCCCCTCGCCAAAAA-TTTCCTGCGTCATCTGATTCCGCGCGACACGATGCTAACGCCCACCACA---GGAAGCCGCTGAGCTCGGTAAGGGTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 10025 ] BEGIN TREES; TITLE Pseudofusicoccum_Bayes; LINK TAXA = TaxaForAnalysisStep10025; TREE con_50_majrule = [&R] (Botryosphaeria_dothidea_CMW_8000:0.001643,Botryosphaeria_dothidea_CAP_288:0.002143,(((Pseudofusicoccum_adansoniae_CBS_122054:0.001188,Pseudofusicoccum_adansoniae_WAC_13299:0.001179)1.00:0.011481,(Pseudofusicoccum_stromaticum_CMM_3971:0.001149,Pseudofusicoccum_stromaticum_CMM_3967:0.001148,Pseudofusicoccum_stromaticum_CMM_3964:0.001142,Pseudofusicoccum_stromaticum_CMM_3953:0.001139,(Pseudofusicoccum_stromaticum_CMM_3978:0.001121,Pseudofusicoccum_stromaticum_CMM_3961:0.001135,Pseudofusicoccum_stromaticum_CMM_3965:0.001143)0.98:0.002269,(Pseudofusicoccum_stromaticum_CMW_13434:0.001167,Pseudofusicoccum_stromaticum_CMW_13435:0.00118)0.97:0.002289)0.94:0.016452)0.60:0.005285,((Pseudofusicoccum_ardesiacum_CBS_122062:0.002379,Pseudofusicoccum_ardesiacum_WAC_13294:0.001204)0.88:0.002839,(Pseudofusicoccum_kimberleyense_CBS122061:0.003511,Pseudofusicoccum_kimberleyense_WAC13293:0.003634)0.87:0.002988)0.60:0.005106)1.00:0.774618); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr56218] END; BEGIN TREES; TITLE Pseudofusicoccum_Bayes; LINK TAXA = TaxaForAnalysisStep10025; TREE con_50_majrule = [&R] (Botryosphaeria_dothidea_CMW_8000:0.001643,Botryosphaeria_dothidea_CAP_288:0.002143,(((Pseudofusicoccum_adansoniae_CBS_122054:0.001188,Pseudofusicoccum_adansoniae_WAC_13299:0.001179):0.011481,(Pseudofusicoccum_stromaticum_CMM_3971:0.001149,Pseudofusicoccum_stromaticum_CMM_3967:0.001148,Pseudofusicoccum_stromaticum_CMM_3964:0.001142,Pseudofusicoccum_stromaticum_CMM_3953:0.001139,(Pseudofusicoccum_stromaticum_CMM_3978:0.001121,Pseudofusicoccum_stromaticum_CMM_3961:0.001135,Pseudofusicoccum_stromaticum_CMM_3965:0.001143):0.002269,(Pseudofusicoccum_stromaticum_CMW_13434:0.001167,Pseudofusicoccum_stromaticum_CMW_13435:0.00118):0.002289):0.016452):0.005285,((Pseudofusicoccum_ardesiacum_CBS_122062:0.002379,Pseudofusicoccum_ardesiacum_WAC_13294:0.001204):0.002839,(Pseudofusicoccum_kimberleyense_CBS122061:0.003511,Pseudofusicoccum_kimberleyense_WAC13293:0.003634):0.002988):0.005106):0.774618); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr56219] END;