#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 03, 2024; 7:12 GMT TreeBASE (cc) 1994-2008 Study reference: Raja H.A., Oberlies N., El-elimat T., Zelski S.E., Shearer C., & Miller A.N. 2013. Freshwater Ascomycetes: Lindgomyces angustiascus, (Lindgomycetaceae, Pleosporales, Dothideomycetes), a new species occurring on submerged wood from the USA. Mycoscience, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13461] [ The following blocks are input data for analysis step 10228 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10228; DIMENSIONS NTAX=18; TAXLABELS Lindgomyces_angustiascus_A640a Lindgomyces_angustiascus_A640b Lindgomyces_angustiascus_G202a Lindgomyces_apiculatus_KT1108_ITS1ITS4 Lindgomyces_apiculatus_KT1144_ITS1ITS4 Lindgomyces_breviappendiculatus_KT1215_ITS1ITS4 Lindgomyces_breviappendiculatus_KT1399_ITS1ITS4 'Lindgomyces cinctosporae F56-1 ITS' Lindgomyces_ingoldianus_ATCC200398_ITS1ITS4 Lindgomyces_ingoldianus_KH100_ITS1ITS4 Lindgomyces_ingoldianus_KH241_ITS1ITS4 Lindgomyces_lemonweirensis_A632_1A_ITS 'Lindgomyces lemonweirensis A632-1B' Lindgomyces_rotundatus_KH114_ITS1ITS4 Lindgomyces_rotundatus_KT1096_ITS1ITS4 Lindgomyces_rotundatus_KT1107_ITS1ITS4 Lindgomyces_rotundatus_KT966_ITS1ITS4 Massariosphaeria_typhicola_KT797_ITS1ITS4 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14622] TITLE Lindgomycetaceae_ITS; LINK TAXA = TaxaForAnalysisStep10228; DIMENSIONS NCHAR=1197; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Lindgomyces_angustiascus_A640a CAATACTCTGGCCAAGATGAGCGTTGCGCTTTGGGCTCTTTTTCAAGTATTACAACTTTGAAAAATGAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCTCAGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCACAAAAAAAAAAAAGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGATTATCTCTAGCGAGATCCAGCCTATTCTCTACCACACGCGAGGTCTCAAATCTGGCCCCTGATCTAAGCGTGCTATTCTCTACTGTAGATAAAGTGACAGCCACTGCGAGGACCCCTTTGCTCAAGGGAAACCCGCCGTGGCGTAGTGGCAAATGGCTCCCACCGTCCTTCAGGCGTATATCGCCTGCGGAGTTGGTTTAGGTCTTCGGATCAGGAGGGATGCCATCACTGAAAAGTCTGCCCGTCGCTTTTTCTTTACCCGAGCGCGTTAATGGACCAAGGGTACGGTACCTCGAGGCAATTTGAAATGAGTTGCCTCTGTCGTGTGTTTATATATCTATTTGCCTTGTAGCCCGCGGGTTTTCTGAACCTTTGCGTATGGGCGGGCGTCTACTCTCACTTGGTCAGCACTTGCTGAACGATTTTTCTCCCTTGGGGAATCGATCCTATGCCAACTCCTGGACCCCCTGTTTATGTGTACCCTTCGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACTCTTTTTGTAGTTGCAGTGTCTGTAGAATTATCAATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGATGTTGGGTGTTTGTCCCGCGTCCCGCGTGGACTCGCCTTAAAACCATTGGCAGCAGACATCGTGGCTAATTGCGCAGCAGATACGCGCCTGACGTTGGATGTCGGCTCTCCACGAGTGTAGCCTTTTATTTTCAGTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGGCGGAGGAA Lindgomyces_angustiascus_A640b CAATACTCTGGCCAAG-TGAGCGTTGCGCTTTGGGCTCTTTTTCAAGTATTACAACTTTGAAAAATGAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCTCAGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCACAAAAAAAAAAAAGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGATTATCTCTAGCGAGATCCAGCCTATTCTCTACCACACGCGAGGTCTCAAATCTGGCCCCTGATCTAAGCGTGCTATTCTCTACTGTAGATAAAGTGACAGCCACTGCGAGGACCCCTTTGCTCAAGGGAAACCCGCCGTGGCGTAGTGGCAAATGGCTCCCACCGTCCTTCAGGCGTATATCGCCTGCGGAGTTGGTTTAGGTCTTCGGATCAGGAGGGATGCCATCACTGAAAAGTCTGCCCGTCGCTTTTTCTTTACCCGAGCGCGTTAATGGACCAAGGGTACGGTACCTCGAGGCAATTTGAAATGAGTTGCCTCTGTCGTGTGTTTATATATCTATTTGCCTTGTAGCCCGCGGGTTTTCTGAACCTTTGCGTATGGGCGGGCGTCTACTCTCACTTGGTCAGCACTTGCTGAACGATTTTTCTCCCTTGGGGAATCGATCCTATGCCAACTCCTGGACCCCCTGTTTATGTGTACCCTTCGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACTCTTTTTGTAGTTGCAGTGTCTGTAGAATTATCAATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGATGTTGGGTGTTTGTCCCGCGTCCCGCGTGGACTCGCCTTAAAACCATTGGCAGCAGACATCGTGGCTAATTGCGCAGCAGATACGCGCCTGACGTTGGATGTCGGCTCTCCACGAGTGTAGCCTTTTATTTTCAGTTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGGCGGAGGAA Lindgomyces_angustiascus_G202a ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAC-TGGATTATCTCTAGCGAGGTCCAGCCTATTCTCTACCACACGCGAGGTCTCAAATCTGGCCCCTGATCTAAGCGTGCTATTCTCTACTGTAGATAAAGTGACAGCCACTGCGAGGACCCCTTTGCTCAAGGGAAACCCGCGGTGGCGTAGTGGCAAATGGCTCCCACCGTCCTTCAGGCGTATATCGCCTGCGGAGTTGGTTTAGGTCTTCGGATCAGGAGGGATGCCATCACTGAAAAGTCTGCCCGTCGCTTTTTCTTTACCCGAGCGCGTTAATGGACCAAGGGTACGGTACCTCGAGGCAATTTGAAATGAGTTGCCTCTGTCGTGTGTTTATATATCTATTTGCCTTGTAGCCCGCGGGTTTTCTGAACCTTTGCGTATGGGCGGGCGTCTACTCTCACTTGGTCAGCACTTGCTGAACGATTTTTCTCCCTTGGGGAATCGATCCTATGCCAACTCCTGGACCCCCTGTTTATGTGTACCCTTCGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACTCTTTTTGTAGTTGCAGTGTCAGTAGAATTATCAATCTTA-TAAAACTTTCAACAACGGAT-TCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGATGTTGGGTG-TTGTCCCGCGTCCTGCGTGGACTCGCCTTAAAACCATTGGCAGCAGACATCGTGGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_apiculatus_KT1108_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTT-TGAGTATTTCCAACTTGA---AAAAGAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAACGAGTGCCTTACAAAGGGACGCTTTGCTTTCGAGAGGTCAGCTGCGTACTTGGACCA--GCCAGCGAGGTCCAGCCAA-----TAGCACACGCGAGGTTTCAAACCCG---CCCGACCCCAGCGTGCTC---TCTAGTGTAG----AGTGACAGCCGCCGCGAGAGACCCTTTGCTC-GAGGGGACCCGCGGTGGAATAGTGGCAAATGGCTCC--CCTTCCTTCAGGCGTATCTTGCCGGTGGAGTTGGTTTGGATCTTCGGATCAGATGAGA-------ACTGAAAA------CCGTTGCTT----CTTACCCG-----------------AGGGTGCGGTACCTCGAGGCGATC------------TCTCTGTCGTGGG------------TTTGCCCTACAGCCCGCGGG-TTTTTTGACCTTTGCGTATGGGCGGGTGT----------CAGGTTAGCACTTGCTGAACGTTATCCCC-CC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTCATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTCTTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCCACGTGCGCGGACTCGCCTTAAAATCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_apiculatus_KT1144_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTT-TGAGTATTTCCAACTTGA---AAAAGAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAACGAGTGCCTTACAAAGGGACGCTTTGCTTTCGAGAGGTCAGCTGCGTACTTGGACCA--GCCAGCGAGGTCCAGCCAA-----TAGCACACGCGAGGTTTCAAACCCG---CCCGACCCCAGCGTGCTC---TCTAGTGTAG----AGTGACAGCCGCCGCGAGAGACCCTTTGCTC-GAGGGGACCCGCGGTGGAATAGTGGCAAATGGCTCC--CCTTCCTTCAGGCGTATCTTGCCGGTGGAGTTGGTTTGGATCTTCGGATCAGATGAGA-------ACTGAAAA------CCGTTGCTT----CTTACCCG-----------------AGGGTGCGGTACCTCGAGGCGATC------------TCTCTGTCGTGGG------------TTTGCCCTACAGCCCGCGGG-TTTTTTGACCTTTGCGTATGGGCGGGTGT----------CAGGTTAGCACTTGCTGAACGTTATCCCC-CC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTCATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTCTTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCCACGTGCGCGGACTCGCCTTAAAATCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_breviappendiculatus_KT1215_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTGCGTTT---GCTCTTT-TGAG-TATTCCAACTTGAA--ATCAAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCACGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACTA--TCCAGCAATGTCCAGCCTA-----TAGCACACGCGAGGTCTCAAACCCG---TGTGATCTAAGCGTGCTCTTTTCTACTGTAG-----GTGACAGCCACAGCGATGAACCCTTTGCTC-AGGGTGATCCGCGGTGGAATAGCGGCAAATGGCTCC--CCGTCCTGCAGGCGTATCTCGCCGGTGGAGTTGGTTTGGATCTTCGGATCAGGTGGGA-------ACTGAAAA------CCGTTGCTT----TCTACCCG-----------------AGGGTGCGGTACCTCGAGGCGATC------------CCTCTGTCGTGTG------------TTTGCCCTGTAGCCCGCAGGTTTTT---GCCTTTGCGTATGGGCGGGCGT----------TTGGTCAGCGCTTGCTGAACGTCTTTTTTCCC--GGAGAGTCGATCCTATGCCAACTCCCGGACCCCTTGTTTATGTGTATC--TCGTTTCCTCGGCAGGCTTGCTTGCCAATGGGGACACCAACAAACTCTTTTTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCCACGTGTGTGGACTCACCTTAAAATCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_breviappendiculatus_KT1399_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTGCGTTT---GCTCTTT-TGAG-TATTCCAACTTGAA--ATCAAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCACGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACTA--TCCAGCAATGTCCAGCCTA-----TAGCACACGCGAGGTCTCAAACCCG---TGTGATCTAAGCGTGCTCTTTTCTACTGTAG-----GTGACAGCCACAGCGATGAACCCTTTGCTC-AGGGTGATCCGCGGTGGAATAGCGGCAAATGGCTCC--CCGTCCTGCAGGCGTATCTCGCCGGTGGAGTTGGTTTGGATCTTCGGATCAGGTGGGA-------ACTGAAAA------CCGTTGCTT----TCTACCCG-----------------AGGGTGCGGTACCTCGAGGCGATC------------CCTCTGTCGTGTG------------TTTGCCCTGTAGCCCGCAGGTTTTT---GCCTTTGCGTATGGGCGGGCGT----------TTGGTCAGCGCTTGCTGAACGTCTTTTTTCCC--GGAGAGTCGATCCTATGCCAACTCCCGGACCCCTTGTTTATGTGTATC--TCGTTTCCTCGGCAGGCTTGCTTGCCAATGGGGACACCAACAAACTCTTTTTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCCACGTGTGTGGACTCACCTTAAAATCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- 'Lindgomyces cinctosporae F56-1 ITS' -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTCT-TGAG-TTTTCCAACTTGAAA-AATGAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCTGGTATAGCGGTCAAATTCCATGAAGACGGAGCATAAATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACGGGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCATACTTGGACCC--GCTAGCAAGGTCCAGCCTA-----TAGCACACGCGAGGTCTCAAACCCG---CCTGATCTAAGCGTGCTCTCATCT-TTGTAG----AGTGACAGCTACTGCGAGAACCCCTTTGCTC-AGGGTGATTCGCGGTGGAATAGTGGCAAATGGCTCC--CCGTCCCTCAGGCGTATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCAGGTGGGACGCTATTAATGAAAAGATTGCCCGTTGCTT---------------------------------------------------------------------------------------------------------------TTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCTATCTGAGCG-CGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lindgomyces_ingoldianus_ATCC200398_ITS1ITS4 -GATCCTCTGGCCAAG-TGAGCGTGGCGCTT---GCTCTTTTTCA-----------------------AAAGGCGGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCCGGTACAGCGGTCAAATTCCACGAAGACGGAGCATGGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAAGAAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTCGGACCA--CCCAGCGAGGTCCAGCCTG-----TAGCACACGCGAGGTCTAAAACCCG---CCTGGCCTAGGCGTGCTCTCTTCTGCTGTAG----AGTGACGGCCTCCGCGGGGACCCCCTCGTTC-AGGGCGATCCGCGGTGGAACCCTGGCAAATGGCTCC--CTGTCCTTCAGGCGTATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCAGGAGGGG-------ACTGAAAA------CCGTCGCTC----CCTACCAG-----------------AGGGTGTGGTACCTCGAGGCGATC------------CTCTTGCCGTGTG------------TCTGCCCCATGGCCCGCGGGTTTTT--GGCCTTCGCGTATGGGCGGGCGC----------TTGGTTAGCATCTGCTGGGTGATTTCCCCTCC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTCTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCCAACAAACGCTTTATGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTGTGTCTCGCTACTTGCGCAGACTCGCCTTAAAATCATTGGCAGCAGACATCGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_ingoldianus_KH100_ITS1ITS4 -GATCCTCTGGCCAAG-TGAGCGTGGCGCTT---GCTCTTTTTCA-----------------------AAAGGCGGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCCGGTACAGCGGTCAAATTCCACGAAGACGGAGCATGGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAAGAAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTCGGACCA--TCCAGCGAGGTCCAGCCTG-----TAGCACACGCGAGGTCTAAAACCCG---CCTGGCCTAGGCGTGCTCTCTTCTGCTGTAG----AGTGACGGCCTCCGCGGGGACCCCCTCGTTC-AGGGCGATCCGCGGTGGAACCCTGGCAAATGGCTCC--CTGTCCTTCAGGCGTATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCAGGAGGGG-------ACTGAAAA------CCGTCGCTC----CCTACCAG-----------------AGGGTGTGGTACCTCGAGGCGATC------------CTCTTGCCGTGTG------------TCTGCCCCATGGCCCGCGGGTTTTT--GGCCTTCGCGTATGGGCGGGCGC----------TTGGTTAGCATCTGCTGGGTGATTTCCCCTCC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTCTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCCAACAAACGCTTTATGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTGTGTCTCGCTACTTGCGCAGACTCGCCTTAAAATCATTGGCAGCAGACATCGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_ingoldianus_KH241_ITS1ITS4 -GATCCTCTGGCCAAG-TGAGCGTGGTGCTT---GCTCTTTTCAAA----------------------AAAGGCGGTTGGAGAGCTACTGGGGTGTAAGAAATCCCCGGGAGTCTCGACAGCCGGTACAGCGGTCAAATCCCACGAAGACGGAGCATGGATAGCTAACCCTTGCGTCGTTGCAC---AAAAAAAAATAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTCGGACCA--CCCAGCGAGGTCCAGCCTG-----CAGCACACGCGAGGTCTAAAACCCG---CCTGGCCTAGGCGTGCTCTCTTCTGCTGTAG----AGTGACGGTCTCCGCGCGGACCCCCTCGTTT-AGGGCGATTCGCGGTGGAACTCTGGCAAATGGCTCC--CTGTCCTTCAGGCGTATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCAGGAGGGG-------ACTGAAAA------CCGTCGCTT----CCTACCAA-----------------AGGGTGTGGTACCTCAAGGCGAT-------------CCTCTGCCGTGTG------------TCTGCCCCATGGCCCGCGGGTTTTT--GGCCTTCGCGTATGGGCGGGCAC----------TTGGTCAGCATCTGCTGGGCGAATTCCCCTCC--GGGGAATCAATCCTATGCCAACTCCCGAACCCTCTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACGCTTTATGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTGTGTCTCGCTACTTGCGCAGACTCGCCTTAAAATCATTGGCAGTAGACATCGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_lemonweirensis_A632_1A_ITS -AATACTCTGGCCAAG-TGAGCGTTGCGCTT---GCTCTTTTTCAAGTATTACAACTTTGAAAAATGAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCTCAGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAAAGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGATTA--TCTAGCGAGGTCCAGCCTA-----TAGCACACGCGAGGTCTCAAATCTG---CCTGATCTAAGCGTGCTATTCTCTACTGTAG----AGTGGCAGCCACTGCGAGGACCCCTTTGCTC-AGGGAAACCCGCGGTGGAGTAGTGGCAAATGGCTCC--CCGTCCTTCAGGCGTATCTCGCCTGCGGAGTTGGTTTAGGTCTTCGGATCAGGAGGGA-------ACTGAAAA------CCGTCGCTT----TCTACCCG-----------------AGGGTACGGTACCTCGAGGCGAT-------------CCTCTGTCGTGTG------------TTTGCCTTGTAGCCCGCGGG-TTTCTGAACCTTCGCGTATGGGCGGGCGT----------TCGGTCAGCACTTGCTGAACGATTTTTCTCCC--GGGGAATCGATCCTATGCCAACTCCTGGACCCCCTGTTTATGTGTACC--TCGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACTCTTTTCGTAGTTGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Lindgomyces lemonweirensis A632-1B' -AATACTCTGGCCAAG-TGAGCGTTGCGCTT---GCTCTTTTTCAAGTATTACAACTTTGAAAAATGAAAAGGCAGTTGGAGAGCTACTGGGGTGTAAGAAATCCTCAGGAGTCTCGACAGCTGGTACAGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC----AAAAAAAAGAGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGATTA--TCTAGCGAGGTCCAGCCTA-----TAGCACACGCGAGGTCTCAAATCTG---C{CG}TGATCTAAGCGTGCTATTCTCTACTGTAG----AGTGGCAGCCACTGCGAGGACCCCTTTGCTC-AGGGAAACCCGCGGTGGAGTAGTGGCAAATGGCTCC--CCGTCCTTCAGGCGTATCTCGCCTGCGGAGTTGGTTTAGGTCTTCGGATCAGGAGGGA-------ACTGAAAA------CCGTCGCTT----TCTACCCG-----------------AGGGTACGGTACCTCGAGGCGAT-------------CCTCTGTCGTGTG------------TTTGCCTTGTAGCCCGCGGG-TTTCTGAACCTTCGCGTATGGGCGGGCGT----------TCGGTCAGCACTTGCTGAACGATTTTTCTCCC--GGGGAATCGATCCTATGCCAACTCCTGGACCCCCTGTTTATGTGTACC--TCGTTTCCTCGGCAGGCTTGCCTGCCAATGGGGACTCTAACAAACTCTTTTCGTAGTTGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGATGTTGGGTGTTTGTCCCGCGTCCTGCGTGGACTCGCCTTAAAACCATTGGCAGCAGACATCGTGGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_rotundatus_KH114_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTTCCGAGATATTCCAACTCGAAAGAAAAGAAAGGCAGTTGGAGAGCTACTAGGGTGTAAGAAATCCCTAGGAGTCTCGACAGCTGGTACGGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACAGGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACCA--ACCAGTTTGGTCCAGCCAA-----TAGCACACACGAGGTCTCAAACCCG---CCTGACCTCAGTTAGCTC---TGTACGGTAA----AGTGATAGCCGCTGCGAGAGACCCTTTGCTC-AAGGGGGCCCGCGGTGGAATAGTGGCAAGTGGCTCC--CCTTCCTTCAGGCATATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCGGATGGGA-------ACTGAAAA------CCGTTGCTT----CCTATCCG-----------------AGGGTGCGGTACCTC---------------------TCTCTGTCGTGTG------------TTTGTCTCTTAGCCCGC----TTTCTTGGCCTTTGCATATGGGCAGGCGT----------TTGGTCGGTACTTGCTGAACGTTTTCCCCTTC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTATTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCTACGTGCGCGGACTCGCCTTAAAGTCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_rotundatus_KT1096_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTTCCGAGATATTCCAACTCGAAAGAAAAGAAAGGCAGTTGGAGAGCTACTAGGGTGTAAGAAATCCCTAGGAGTCTCGACAGCTGGTACGGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACAGGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACCA--ACCAGTTTGGTCCAGCCAA-----TAGCACACACGAGGTCTCAAACCCG---CCTGACCTCAGTTAGCTC---TGTACGGTAA----AGTGATAGCCGCTGCGAGAGACCCTTTGCTC-AAGGGGGCCCGCGGTGGAATAGTGGCAAGTGGCTCC--CCTTCCTTCAGGCATATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCGGATGGGA-------ACTGAAAA------CCGTTGCTT----CCTATCCG-----------------AGGGTGCGGTACCTC---------------------TCTCTGTCGTGTG------------TTTGTCTCTTAGCCCGC----TTTCTTGGCCTTTGCATATGGGCAGGCGT----------TTGGTCGGTACTTGCTGAACGTTTTCCCCTTC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTATTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCTACGTGCGCGGACTCGCCTTAAAGTCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_rotundatus_KT1107_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTTCCGAGATATTCCAACTCGAAAGAAAAGAAAGGCAGTTGGAGAGCTACTAGGGTGTAAGAAATCCCTAGGAGTCTCGACAGCTGGTACGGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACAGGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACCA--ACCAGTTTGGTCCAGCCAA-----TAGCACACACGAGGTCTCAAACCCG---CCTGACCTCAGTTAGCTC---TGTACGGTAA----AGTGATAGCCGCTGCGAGAGACCCTTTGCTC-AAGGGGGCCCGCGGTGGAATAGTGGCAAGTGGCTCC--CCTTCCTTCAGGCATATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCGGATGGGA-------ACTGAAAA------CCGTTGCTT----CCTATCCG-----------------AGGGTGCGGTACCTC---------------------TCTCTGTCGTGTG------------TTTGTCTCTTAGCCCGC----TTTCTTGGCCTTTGCATATGGGCAGGCGT----------TTGGTCGGTACTTGCTGAACGTTTTCCCCTTC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTATTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCTACGTGCGCGGACTCGCCTTAAAGTCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Lindgomyces_rotundatus_KT966_ITS1ITS4 -GATACTCTGGCCAAG-TGAGCGTTTCGCTT---GCTCTTTCCGAGATATTCCAACTCGAAAGAAAAGAAAGGCAGTTGGAGAGCTACTAGGGTGTAAGAAATCCCTAGGAGTCTCGACAGCTGGTACGGCGGTCAAATTCCATGAAGACGGAGCATAGATAGCTAACCCCTGCGTCGTTGCAC---AAAAAAAACAGGTGCCTTACAAAGGGACGCTTTGCTCTCGAGAGGTCAGCTGCGTACTTGGACCA--ACCAGTTTGGTCCAGCCAA-----TAGCACACACGAGGTCTCAAACCCG---CCTGACCTCAGTTAGCTC---TGTACGGTAA----AGTGATAGCCGCTGCGAGAGACCCTTTGCTC-AAGGGGGCCCGCGGTGGAATAGTGGCAAGTGGCTCC--CCTTCCTTCAGGCATATCTCGCCGGCGGAGTTGGTTTGGATCTTCGGATCGGATGGGA-------ACTGAAAA------CCGTTGCTT----CCTATCCG-----------------AGGGTGCGGTACCTC---------------------TCTCTGTCGTGTG------------TTTGTCTCTTAGCCCGC----TTTCTTGGCCTTTGCATATGGGCAGGCGT----------TTGGTCGGTACTTGCTGAACGTTTTCCCCTTC--GGGGAATCGATCCTATGCCAACTCCCGGACCCTTTGTTTATGTGTACC--TTGTTTCCTCGGCAGGCTTGCCTGCCAACGGGGACTCCAACAAACTCTTATTGTAGTGGCAGTGTCTGT--AATTA--AATCTTATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTTTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGTTTGTCCCGCTACGTGCGCGGACTCGCCTTAAAGTCATTGGCAGCAGACATTGTAGCTAATTGCGCAGCAG-------------------------------------------------------------------------------------------------------------------- Massariosphaeria_typhicola_KT797_ITS1ITS4 -GTCACTCTGGCCGAG-TGCGCGTTTCGCTT---CTTCTCTGTGATTCATTTCGAATCCT---GAGAAACAGGCCGTCGTCGAGCCATCGGGGTGTAAGAAATCCCCGGAGGTCTCGGCGGCTGGTACAGCGGTCAAATTCCATGAAGACGGAACATAGATAGCTAACCCCTTTGTCGCTTGCC---GAAAAAAAGAAATGCCTTACAGAGGGACGCTTTGTTCCAGAGAGGTCAACTGCGTACTTGGACTT--TCAGGGGTAGTCCAGCCTT-----TTGCACACGCGAGGTCTCAAATCCC---ACTAGCCTATGTACGCGAACAGTCAACGTA-----AACGAACGCGGGGGACAAAGGCGCTAAGCTC-CGGCGTCCCTGCGGGGTTGTA--AGCCATCGACTCA--CCACAC----GGCGTAATTCTCCAGCGGAGTTGGTTTGGATCTTCGGATCAGGTGAGG-------GTCGATAA------TCATCCCGC----CCCGCGTG-----------------AGTACTCGGTAATTCGATGTGTTC------------CGATTGCCGTGTG------------CCCGGTCGGTGACCTGCTTG-TCTTCGCGCCGCCGCGTTTGAGTGGAGGA----------CCGGGCAACCCCCCGTGGACAGTCT---------GCGTAAGAGATCCTATACCAACTCCCGGACCCCTTGTCTATGTGTACT--TCGTTTCCTCGGCGGGCTCGCCCGCCAACGGGGACA--AACAAACCCTTTTTGCAGTGGAAGTTTCTGT--AACAA--AACCTCATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCATAGGGCATGCCTGTTCGAGCGTCGTCTCAAACCTTCAAGCCTAGCTTGGTGTTGGGTGACTGTCCCGCCTCACGCGCGGACTCGCCTCAAAGTCATTGGCAGCAGACTCGGTAGCTAATTGCGCAGCAC-------------------------------------------------------------------------------------------------------------------- ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Lindgomycetaceae_ITS) = N: 1-1197; CODONPOSSET CodonPositions (CHARACTERS = Lindgomycetaceae_ITS) = N: 1-1197; END; [ The following blocks are output data for analysis step 10228 ] BEGIN TREES; TITLE Lindgomyces_ITS; LINK TAXA = TaxaForAnalysisStep10228; TREE tree_1 = [&R] (Massariosphaeria_typhicola_KT797_ITS1ITS4:0.27318,(((Lindgomyces_apiculatus_KT1144_ITS1ITS4:0.0,Lindgomyces_apiculatus_KT1108_ITS1ITS4:0.0)1.00:0.02877,(Lindgomyces_rotundatus_KT1107_ITS1ITS4:0.0,(Lindgomyces_rotundatus_KT1096_ITS1ITS4:0.0,(Lindgomyces_rotundatus_KT966_ITS1ITS4:0.0,Lindgomyces_rotundatus_KH114_ITS1ITS4:0.0)0.00:0.0)0.00:0.0)1.00:0.04878)0.85:0.01817,('Lindgomyces cinctosporae F56-1 ITS':0.04934,((Lindgomyces_breviappendiculatus_KT1399_ITS1ITS4:0.0,Lindgomyces_breviappendiculatus_KT1215_ITS1ITS4:0.0)1.00:0.0345,((((Lindgomyces_angustiascus_A640a:0.0,Lindgomyces_angustiascus_A640b:8.5E-4)0.92:0.00286,Lindgomyces_angustiascus_G202a:0.00118)0.95:0.00637,('Lindgomyces lemonweirensis A632-1B':0.0,Lindgomyces_lemonweirensis_A632_1A_ITS:0.0)0.84:0.00356)1.00:0.04983,(Lindgomyces_ingoldianus_KH241_ITS1ITS4:0.02582,(Lindgomyces_ingoldianus_KH100_ITS1ITS4:0.00112,Lindgomyces_ingoldianus_ATCC200398_ITS1ITS4:0.0)0.16:0.00631)1.00:0.07241)0.78:0.01315)0.63:0.00649)0.62:0.0053):0.19975):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr57817] END;